Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0113800 |
| Transcript ID | LotjaGi5g1v0113800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/arginine rich splicing factor, putative; TAIR: AT1G55310.2 SC35-like splicing factor 33; Swiss-Prot: sp|Q9SEU4|SRC33_ARATH Serine/arginine-rich SC35-like splicing factor SCL33; TrEMBL-Plants: tr|I3SR49|I3SR49_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0113800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22730336..22732210) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGGGGAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACGGCGGCCGAAGAAGGCGCAGTCCTAGCCCTAA GGGCCGCTACCGTGGAAGGGAAAGGGATTTGCCTACTAGTCTTCTGGTTCGGAACCTGCACAGAGATACCAGGTTAGACA TGTTTCTATGGTTGGTATTTTGCATCTGATGAAATCATGGGTGTTGAAAGAGAATGATGGTGTAGGAAGAGCAGTGCTAG TGTTATTGCTTATGATTTGATTTGAAATTTTAACTGGAATGCTTGGTTTTGCAGGACAGAAGATCTGCATGGTCCCTTTA GCCACTTTGGTCCTATCAAAGATGTTTATCTGCCTCGCGATTATTATACTGGGTGAGTTTGTTTGAGTGTTTTCATTTGC TGAATCATGGTTTATTTGGTTTTGAAATATTTTTAGGCTTCTGTTCTCATGTTTATTTAGGGTCTCTGTTCATATAGTCT TAGGGGAAAAAGTGTTTAATGTTGTTTTGAAGATCTATTCGTTATTCATGAGAGCTTTGCACTGTATACTTTTTATGTTA GGAAATAGTTATGATTAGCATGTTTTTCCAGTGTAACTTGTCATAATCTGCTCTTTTTCCTATTCTGATGTGTTTTGAAA GTTAGAACAAGCGTTCTAAATGGAAGCGCTCTTTCTTTTATAATATCAGAAAAATGGATCAACTCCACTCTTATCCATTT TGAAAATTTCCATTCCTGACCTGGGATTTTGCAAAGATTTAGTGGTTTTTTGTGTGCATTTAGTTTTGTCACTGCTTTAA CTGTAAGATTTAATACTCCAATCATTTTATGGGATTTGGTTGTTTTATTGAAAGAGTTGAAGACAAGAATGAAGTAGTGA GAGTTCTGTGTTGAAGACAAGAAAGAAGTAATAAGAGTGTCATGTTGAAGAAGACACCAATCAGGTAGTAAGAGTTCTAT TCAGGTTGATGTTAGTGTACTTGGAGGATTCGGAAGGTTGAGTTTGAATTCATTGTGAAGAAGTTCAAGTCTTGAAGATT TTCATCTCAATACTTTGGCTTCTACAAGGTTAGCATTAATGTGGTGTTTATTATTGAATTCTATGGAGTTTGAGAGGTAT GACTTGTGAGAGTTTGGAGTCTGGATTCCATTTGTGGATATCTGCAACCAACCCAGCTTCAGCATGCAGGTGTGTTTATT TATCACGCCACACATATGGTGTGTCTGATGATTTTGGATCTGATGGTACAGGAATCCAAGAGGTTTTGGGTTTGTTCAAT ATGTGGATCCCGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCAAATTCTTCTTGGTCGTGAGTTAACTGTGGTG TTTGCCGAAGAAAACAGAAAGAAGCCTGCAGAAATGAGGGCAAGAGAGCGTCATAGGTAAGGATATAGATTGTTGATTGT TTGCTTATGATTGAATCAAATATTATCATGTCATTTTGAAATTGCTATTGTTTGAACTTTGAAGTGCTAGGGAGCGGTCA TATGATTATAGGCGATCTCCGCGTGGGTATTCTCGTTCCCCGCGTTATGCACGGACCTATTCACGTAGTCCAGACTATAC ACCTTCTCCGAGAAGGCGGCGATATTCAAGGTATGTTGTTAAAGTTAGCTTTTTAACTGATTCTTCATTTGTGATGTATA CTACTTGCAGTGTTGGCATTCTTAGAATGGCCTCCTTCATTATGATTCAGGTCAATCTCACCAAGAGATAGAAGGTATGG TAGGCGATCATACTCTGGTTCACCTTATGGATCTAGAAGCCGCAGCCGAAGTAGGAGTTACAGCAGAAGGAGCTATAGTA GAAGCATGAGTAGGAGTCCAGGCTACTCTCGGTGA
CDS sequence (LotjaGi5g1v0113800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGGAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACGGCGGCCGAAGAAGGCGCAGTCCTAGCCCTAA GGGCCGCTACCGTGGAAGGGAAAGGGATTTGCCTACTAGTCTTCTGGTTCGGAACCTGCACAGAGATACCAGGACAGAAG ATCTGCATGGTCCCTTTAGCCACTTTGGTCCTATCAAAGATGTTTATCTGCCTCGCGATTATTATACTGGGAATCCAAGA GGTTTTGGGTTTGTTCAATATGTGGATCCCGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCAAATTCTTCTTGG TCGTGAGTTAACTGTGGTGTTTGCCGAAGAAAACAGAAAGAAGCCTGCAGAAATGAGGGCAAGAGAGCGTCATAGGGAGC GGTCATATGATTATAGGCGATCTCCGCGTGGGTATTCTCGTTCCCCGCGTTATGCACGGACCTATTCACGTAGTCCAGAC TATACACCTTCTCCGAGAAGGCGGCGATATTCAAGGTCAATCTCACCAAGAGATAGAAGGTATGGTAGGCGATCATACTC TGGTTCACCTTATGGATCTAGAAGCCGCAGCCGAAGTAGGAGTTACAGCAGAAGGAGCTATAGTAGAAGCATGAGTAGGA GTCCAGGCTACTCTCGGTGA
Protein sequence (LotjaGi5g1v0113800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGRSYSYSPSPPRRYGGRRRRSPSPKGRYRGRERDLPTSLLVRNLHRDTRTEDLHGPFSHFGPIKDVYLPRDYYTGNPR GFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERHRERSYDYRRSPRGYSRSPRYARTYSRSPD YTPSPRRRRYSRSISPRDRRYGRRSYSGSPYGSRSRSRSRSYSRRSYSRSMSRSPGYSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 14 | 196 | 183 | 7.5E-88 | – | |
| PANTHER | 14 | 196 | 183 | 7.5E-88 | – | |
| Gene3D | 30 | 145 | 116 | 1.8E-26 | ||
| ProSiteProfiles | 39 | 117 | 79 | 17.046 | ||
| SUPERFAMILY | 39 | 146 | 108 | 3.36E-28 | ||
| SMART | 40 | 113 | 74 | 7.1E-21 | ||
| Pfam | 41 | 110 | 70 | 1.8E-19 | ||
| MobiDBLite | 120 | 144 | 25 | - | – | |
| MobiDBLite | 120 | 219 | 100 | - | – | |
| MobiDBLite | 204 | 219 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0113800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…