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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0120400 |
Transcript ID | LotjaGi5g1v0120400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | MLP-like protein; TAIR: AT1G70890.1 MLP-like protein 43; Swiss-Prot: sp|Q9SSK5|MLP43_ARATH MLP-like protein 43; TrEMBL-Plants: tr|I3T371|I3T371_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0120400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25107764..25109532) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTCTAATGTCTTACGATTTTAAACTCTCATATAATTGTTTTTTTTATTTGTTCATGTTAAAATTTTATATTTATC GGAGGCTTAATCAGAGATCATACTAGTAGCTGGGTTTGTGGTTTCATGAGCCACGCAGCGTCGGGCAATGCTTTTACTGC AGAAGCATCTGCTCTTCGTGATGGTCTGTTAATGGCGTGGAGCCACGGTGCTAGAAATCTTGTCTGTGAGTCTGACTGCA AGGAGCTCATCGACCTGTTGCAGAGGCGTGATAGACACAGTTTTCATGTCCAAGCTGCGTTACTACAAGACATTTGCAAC CTACTGGACAAAGGGTGGCGGGTGGAGCTCATATGGATTCCCCGGGAAGTTAACTCCGTTGCGGATTGGATGGCAAAGCA AGGCCTAAGGGACAGGAATATCAATCTTCAATAGCTTCATGTCCCTTCCCAAGAGCTGCAAGTTATGTTGCTCCAAGACT CTCTAGGAGCTCCTTAGTTGTTTTTGTTTTATTTTGCAATTTTCCGATGTATAAAAAAAAAAATGATTGCATGAGTTTAA AAATTCTTTAACTGTTGAGAATCCATACATATTTATAGTTTTTTCTCGCTTTCTTTTAATTTTCTTAGTCTTCTAATTTC ACCCGTCTCTAAATCCAACATTTCTCTTTTCTATATAAGGCGGTATACCCATCCTCATTTCTCATCCCTTTCTAGTTCCA CGGTTCCTTCCTTCTATCTATTTCTTTTGCTTTGATTTCTTTCTTCATCAACAGTCATGGTACTTGCTGGTAAGCTTATT ACTGAAGTTGGGGTCAAAACCCCAGCTGACAAGTTCTACAACCTCTTCACAACTCAGCTTCACGATGTTCAAAAGCACGC TGAAAAAGTGCATGAAACCAAGGTTCATGAAGGCGACTGGCATGGTATTGGCTCAGTTAAACATTGGACTTACGTCGTAG GTATGTATTCATCATTTTCTAATTAAATCAATTTGCAAAAGAAAATATATAAATACTCGATTAGTTATTTTTATTGTAGA ATCGATTGCTAATCAATTTTTTCTCTATTTCTAATCTAATATGCGCAGTTCTATGAGATGAACTATGTTAAATTTTGATC TACCCAATGAATTACATGTTATTAACTAACAGACTCGTTTCTGTTTGTGATCTTAATATATATGTGAAACAACAGATGGC AAGGTGATCACATGCCTGGAGCGTGTTGAAGCCATTGATGAACAGAACAAAACAAACAAATACACCCTTTTCGGTGGTGA CATCGATCCGCACTACAAGAACTTTACGCTGATTTTACAAGTGATTGATAACAAAGATAGCCATGCTGTTGCTAGGTGGA CTATTGAATATGAGAAGCTCCATGAAGACATTGAACCTCCAAATGGCTACATGGAGTACTTTAACAAGCTCACTAGAGAT GTTGATAACCAGATTCACAAGGCATAGAACAAGAAATCATGAAGGAAAAAACAAATATAAGAAATAAATGGGCTTGGTTT GAGTACAATGAAGTGTTTATCTATGTAATCGGTGTGAAGTTTAATATGTAGCTCACTGGAGATCCTTGTTTGCTTCTGTT GATCGTTTGTTTGTATTGAATAAGGATGCATCTTGGTGTTCTCTTCGTTAATCGTCATAATGCAATAAATAAATGATTAT TTATGTGTGCTAGCTCTTTATAGTTTTTGAATTGATTTAGGTTGATTAGCCAAATGTTTCATTCTGCAGTGGATATTATC AAAGTTGCC
CDS sequence (LotjaGi5g1v0120400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTACTTGCTGGTAAGCTTATTACTGAAGTTGGGGTCAAAACCCCAGCTGACAAGTTCTACAACCTCTTCACAACTCA GCTTCACGATGTTCAAAAGCACGCTGAAAAAGTGCATGAAACCAAGGTTCATGAAGGCGACTGGCATGGTATTGGCTCAG TTAAACATTGGACTTACGTCGTAGATGGCAAGGTGATCACATGCCTGGAGCGTGTTGAAGCCATTGATGAACAGAACAAA ACAAACAAATACACCCTTTTCGGTGGTGACATCGATCCGCACTACAAGAACTTTACGCTGATTTTACAAGTGATTGATAA CAAAGATAGCCATGCTGTTGCTAGGTGGACTATTGAATATGAGAAGCTCCATGAAGACATTGAACCTCCAAATGGCTACA TGGAGTACTTTAACAAGCTCACTAGAGATGTTGATAACCAGATTCACAAGGCATAG
Protein sequence (LotjaGi5g1v0120400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLAGKLITEVGVKTPADKFYNLFTTQLHDVQKHAEKVHETKVHEGDWHGIGSVKHWTYVVDGKVITCLERVEAIDEQNK TNKYTLFGGDIDPHYKNFTLILQVIDNKDSHAVARWTIEYEKLHEDIEPPNGYMEYFNKLTRDVDNQIHKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 150 | 150 | 3.9E-69 | – | |
PANTHER | 1 | 150 | 150 | 3.9E-69 | – | |
Gene3D | 1 | 149 | 149 | 2.5E-42 | ||
SMART | 2 | 151 | 150 | 6.7E-42 | ||
Pfam | 3 | 150 | 148 | 2.3E-46 | ||
CDD | 5 | 145 | 141 | 2.10964E-29 | – | |
SUPERFAMILY | 6 | 148 | 143 | 9.9E-33 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Defense response | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. |
Expression pattern of LotjaGi5g1v0120400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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