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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0133900 |
| Transcript ID | LotjaGi5g1v0133900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G31270.1 sequence-specific DNA binding transcription factor; Swiss-Prot: sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a; TrEMBL-Plants: tr|A0A151R6B1|A0A151R6B1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0133900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:31504040..31509096) extracted from Lotus japonicus Gifu genome v1.2.
CACATATACATTACAACCTCCTATTCCTAAATCCTAAATTTCTGAGAGGCCAAAAGCTAAGAAAAAAATTACAGTGATTA TTCCGGGACTAAAAACATGTTTAACCCCAAAGTTTTAAATCTAAAATATGGAAGAACATGTGTGTATTCATGAAAGAATT GCAAGAGAGGCGAAGAATGACGAAGGGAGAAAACGGCGATTCCGTTTCAGCAAGGGGCGGTCGTCGCACTCGATCGCAAG TGGCTCCTGACTGGACCGTAACGGAGTCGCTGATTCTAGTAAATGAAATCGCGGCGGTTGAGGCCGACTGTTCGGCGGCG CTGTCCTCGTACCAGCAGTGGGAGATCATCGCCGGAAACTGCGCCGCCTTGGACATCGGTCGGAACTTGGGGCAGTGTCG GAGGAAGTGGTACGCGCTGCTCGATGAGTACCACAACCGCGGAGGACCCTTGAACTTGGATCCTGAATTGTTTGAGGCCA TCCAGCGAGTTGTCAAGGCACGTCAAGAACGCCATCAGGTTGATCCCGAAAGCGATCCTGAACCGGTGAATGAGGATCTC GATGCTACCCTCGAAATTGGTACGGTTCCTTTCCCTACATCGAATGATTTGTTAAATTTGTGCTTAGAAATGTATATGGT ATGTTGAATTAGCATCATTATTGTGGCGATTGATGGAGTAGTTGTGTTTCCATTAACTACATTATCCGTCCCCGAATGAT AGCTCAAGTGCTAAGAGTTAGATGACATATGAGTTGGATGAAGGGGGTTAGGGATCAATTCCTGGATGATGCAATTTATC TTTCCGATATACCAAAAAATTAACTACATTATCCAAGTTATGTTTCTATCTGTGTAATACTACCTTGGCTGATATCTAAA ACTTGTAGTCATACTAGGTTCACTAGTTGAAATTGACTATCACTTCATGCTCATAAGTCTGGGTAAGTTGTTTGTGTGAC GACAAAATCGGACTGAGGCAATTTTATAACCCAATTCTTGATTAGTATAGGCTAGCTTAAATATACTCACTAGCTCGATA GGGGACGTACTCCTCATGGAAATCACCACTAGGGGATCATTTAAGATACTCCATTTTTCTAAGATACAATGATTATCTTT GAGACATCTTCTAGATATTCAACAAGAAATGAATTAATAGCCTTATTTGTATCATACATTGCTAAACAAGAAACTGTAGT TAGTAGATCAATTATTTTGGTGTTTTCAGACTTTCCCCTTCAACAACAAATGACAAAACTTTTTTCCCTAAGTGGAGTTG AACATATACATCAAATGACACTGGAATTTTCTGTTAAAAAATTATGTCTAATGATAGAACGTTCAAATCTGAATATTTAT TAAGGCTTTGACCTATAGCTTTTTGTAATCTTCTTTTACTCTTTTAATCTACCCCATGTTGGGGCTTCTACAAGTCCTCC CCACACATGCCAGATTTTACCATATTTTCCACCATTGAACTAGGGAGAAACCCCCAACTTATCTTCGACAGTTGTGACAG TTGGGGGATCGGCTCGTCAATGGCGTTTGAGATGGACAAGTGTGAAGCTCTAAGTGGGCCACTACTTACCGTTGGTGAAG CCCTAAAAGCAGAGGATAGAGGAGATGACACACTCAGGCTCTGTTCATTGGTTTCTAAGGTAGCTTAGGATGTCACCTTC AGCTCTTGCTGATTGTAGAGTGGGCGAACATTGATACCGGCCGAACCCTAAAACCTGATAGTGAAAAGAGGGATCGAAAC TTGAGGCAACGACATACGGTGGGTCAACAATGAACCCGAAATTAAGAACAAAAACAGATTACTTTAGGCCTCGTTCGGGA TGGTTGTGAGTTTTTAGTTTTCAAACTATAAAAAACTAAAACTGGGTTTTAGTTTTTAATTTTTCAATTTTAAAAACAGT TGTTAATTTGGGGTGGGAATCAAATGATAATAAAATAATAAAACATAAAAAGTTGTTGTTTGTTCAGGCAAAGTAATAAA GTTACGTAAAAAAAATTAATTTGATAGCCACCCTCCCCACTATCTCCAAGGAAAGCAGTTATGCAAGACATGTGATTGGA ACTTTTAAAACTGAAAACATTAATCAAGAAACCTTTTTTCTTGGTTTTTAAAACTGAGTGATAAGTGTTTTGAAATTGGA TTAAAACTAAAATTAAAACCAATTTTGCCAAACAGGTTTTGTTTCAAAATAAACATTTCAAAATCAAAAACCAAAAACAG CAACCACCCCAAAGAGAACAGGGCCTTAAAAAACCATGATAACATGTATTGACTAGATTGCATGTTGGTGACAGAATAAT AATATTACTATAATAGAGTTCCTAACTTTTGGGGAATTCGACAATGGAATAGTCATGAGATATGTCAAAGAGGATGGCAC TGCTCCACACTGTTACCACAATGAAATTATAGGGTTTTAGTCATAAGGTATAGAAAGAGGAAAAATGAATAAGGAGGATA AAACTATATTGATATAATATATTGGGTATGATCTTGCGAAAGACAAAGTTCTTACTCTTATGTATACTACTGGTAGACTC TAATCCTAGTCAAGTATAGGAAAACTAATTAAAAATCCTTATCCTAATGAAACAAATCAATATAAATAAGGAAATAAAGA AACCAATCCTAAAGAATAATCTGAATTATCCTAAATTACTCCACCAAGATACTATAATATATCTTTGTGTTGTGTCAACT CATCTATGGTAACACTCATCTTTGTAATGATCGTATGTAAATATAGTTTGAATATGTACTTCTATTAAATAGAAGGTGAA TGGATATGCCGATGATATAACACAAGGCTAAAGTATGGATGTCCTATAGTGGATATGGACAAATAACAATTAGTTGATTC TTTATCTTTTTGTATAACACAAGACCAATGCAAATGAAGGAACAGATTGTGACTGGAACCTACATGTTGTTCTTTGGGCA TAAATAACAACAACGAGTGGGTTCCAAATGTCCTCTTGTTAATCATGTCTAAGACAAACCTCTAAATTGAAAGCCTTGTT AATGCTTGAACTATAATTTTTCTTTGTCTACTCTCTCTAACTATTGGACACCTTGCAATTGATCCACTGATCCACTCTCC TTACTCGGGCTTCAATGGGTCTTTTTCACGTGCCAACATCATTGAAGATGATTTTTTTTAACCATCTTTTATGTAATATG CACTACCCTGACTTGTTGAATGATTAGACCGGTAACTTGTTCTGAATTGAGGGACCATGGTACATATAGTGATTTGGCCC TCCATTGATTTTGTAAAACAGTATTAAAACATAAATGCACAGTTAGTAATATTCCAATTTGTCAGTCTTTGTGCCAAATT TGCTTAATCTGTTCTTTGATTGTGAAAATTAAATGGTAGCAGGGTTGTTAATGGCGGATAGCGTAGCGTAGCGGCAAGCC CAAAAAATGCTATTTCAAGAGTGCTATAGCGGCAAATAGCGGTGAACCCCTGGGCGCTACGCTATAGCGCTATTGCGCGG TATTAACAACCCTGAATGGTAGTATGTGGAATGTTTTGATCAACATGATACAATTCCATTTGGTGCTTCTTTTTTCTTTT CCACTTCTTTAGTTATTGTAGAATGAAAATAAGTTGTCAGTATCTCATTCGGAACATTAGCATGTAAATTGTATGTCATT GTCTCTTATAAATATTCAACTAATGAATTTTTGTGAATATAACAATCAGGATCCAGAAGAAAAAGGCAACAAAGTAAATC TGAGAGACACCGCATACAGAAACCTATGAAATGTCAGCCAGTTGAGTCTTCAGAAAACCTCTCAGAAAAACAGGATCAAA GAGACACTCTTGAGCAAAGGTCTGAGGAAAGCCATGAAGATGAGCCTGAGAATCATCATTCAGAAGAAGAGTATTTGAAA GACTTCCTAGAAGACAAATCTAAGATGAAACATACTGCAAAAAGGCCTCCAAAGTCCATAGAGATGCCACTAAAGAGTCT TGCTGAAGCAGAGCTTCATGAGAACCACGATGTAGAAAGGCCAAAGCTGTCGTCCAGGACAGCAGAGATAACAATTAGCA GGGAAGAAGTTGAGAAAACATTGACTCTGAAATTGCAAGAGTTGGGAATAGAGATTCATGAAATTGGTGCTGAATCAGCA GAAGCTGGCTCACATAATGTAGAGGACGACCATACTGAATTTAGAAGGCGCCAAGGGGACAAGTTCATAGCAAGCCTGGG AAATTTCAACAGCACCCTTGAGCAATTATTTGATCTGCTTCAAGATTGTAAATAACATTACACTTTTCTTTTTGTATTTA TTTCCTGTTCTGGTTAGTGAATGAATGCCCCCATTGGAGAATGATGTTTATACTCGAGTTCACTCACTAATGTGTTGTTT GGTTTATGTGAGAGTCCTCAGATAAGATGAGTAGAGAGGAAGTTGAGAGAAAAAAAAAAAGGAGATTTTGTAGGCTGTTT GATATGATAGAAATAGAAGATAAAGAATTAGGTGGATTCTCTATCCCCCTTCATTTAGTTGAATACATAAAGTAAATAGA GAATCAAGAAACAAGAATACATAAAGTAAATAGAGAATCAGAAGAGAGATTCATTACCCAAGTAAAATGTTTGTCCAAAT AAGAAGAAAAAAGTAATTTAGGGGTATCAAAGTTGTAACAGACACGGTATGACGCAGGAAATGCAGATCAGGAATGACCC ATAGGGAAACTGCCCTGGAAAGTGTCCGCTCCACAAAAGTCCTCTTTCCCTCAAAAACCACCTTATTTCTTCTATCCCAG ATGGCATAACCCACTGAGTTGATAAACTCCTGCAAGAAATCCGGGAAATTGAGTTGGGGAACCCTGTCGAAGGAGATGTG AACCATATGGCCTGTGCATCACAAAAGTGAAAATTGGATGTTCAATTGTTTCCGCTCTTGCATCGCTAACTGGGCAGCAA TTGGGATATACTAGAATACCAGTTGGGTTCGAACCCTGAGGAAGACTAATTTACTAACATTACTAACAATTAACATTTGC CTATAAAAAAAAACTAG
CDS sequence (LotjaGi5g1v0133900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGTATTCATGAAAGAATTGCAAGAGAGGCGAAGAATGACGAAGGGAGAAAACGGCGATTCCGTTTCAGCAAGGGG CGGTCGTCGCACTCGATCGCAAGTGGCTCCTGACTGGACCGTAACGGAGTCGCTGATTCTAGTAAATGAAATCGCGGCGG TTGAGGCCGACTGTTCGGCGGCGCTGTCCTCGTACCAGCAGTGGGAGATCATCGCCGGAAACTGCGCCGCCTTGGACATC GGTCGGAACTTGGGGCAGTGTCGGAGGAAGTGGTACGCGCTGCTCGATGAGTACCACAACCGCGGAGGACCCTTGAACTT GGATCCTGAATTGTTTGAGGCCATCCAGCGAGTTGTCAAGGCACGTCAAGAACGCCATCAGGTTGATCCCGAAAGCGATC CTGAACCGGTGAATGAGGATCTCGATGCTACCCTCGAAATTGGATCCAGAAGAAAAAGGCAACAAAGTAAATCTGAGAGA CACCGCATACAGAAACCTATGAAATGTCAGCCAGTTGAGTCTTCAGAAAACCTCTCAGAAAAACAGGATCAAAGAGACAC TCTTGAGCAAAGGTCTGAGGAAAGCCATGAAGATGAGCCTGAGAATCATCATTCAGAAGAAGAGTATTTGAAAGACTTCC TAGAAGACAAATCTAAGATGAAACATACTGCAAAAAGGCCTCCAAAGTCCATAGAGATGCCACTAAAGAGTCTTGCTGAA GCAGAGCTTCATGAGAACCACGATGTAGAAAGGCCAAAGCTGTCGTCCAGGACAGCAGAGATAACAATTAGCAGGGAAGA AGTTGAGAAAACATTGACTCTGAAATTGCAAGAGTTGGGAATAGAGATTCATGAAATTGGTGCTGAATCAGCAGAAGCTG GCTCACATAATGTAGAGGACGACCATACTGAATTTAGAAGGCGCCAAGGGGACAAGTTCATAGCAAGCCTGGGAAATTTC AACAGCACCCTTGAGCAATTATTTGATCTGCTTCAAGATTGTAAATAA
Protein sequence (LotjaGi5g1v0133900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCVFMKELQERRRMTKGENGDSVSARGGRRTRSQVAPDWTVTESLILVNEIAAVEADCSAALSSYQQWEIIAGNCAALDI GRNLGQCRRKWYALLDEYHNRGGPLNLDPELFEAIQRVVKARQERHQVDPESDPEPVNEDLDATLEIGSRRKRQQSKSER HRIQKPMKCQPVESSENLSEKQDQRDTLEQRSEESHEDEPENHHSEEEYLKDFLEDKSKMKHTAKRPPKSIEMPLKSLAE AELHENHDVERPKLSSRTAEITISREEVEKTLTLKLQELGIEIHEIGAESAEAGSHNVEDDHTEFRRRQGDKFIASLGNF NSTLEQLFDLLQDCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 334 | 324 | 4.4E-60 | – | |
| PANTHER | 11 | 334 | 324 | 4.4E-60 | – | |
| MobiDBLite | 12 | 34 | 23 | - | – | |
| ProSiteProfiles | 39 | 95 | 57 | 6.493 | ||
| MobiDBLite | 123 | 207 | 85 | - | – | |
| Coils | 178 | 198 | 21 | - | – | |
| MobiDBLite | 178 | 207 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0133900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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