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LotjaGi5g1v0151800.1

Overview

Field Value
Gene ID LotjaGi5g1v0151800
Transcript ID LotjaGi5g1v0151800.1
Lotus japonicus genome version Gifu v1.2
Description MADS-box transcription factor family protein; TAIR: AT5G60440.1 AGAMOUS-like 62; Swiss-Prot: sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62; TrEMBL-Plants: tr|A0A072W118|A0A072W118_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi5g1v0151800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:39618170..39619078) extracted from Lotus japonicus Gifu genome v1.2.

TCATTTCATTCATCCTGTAACCATGTCAACTCCTGAAACCTCTGGAAAGAAATACAGGGGAAGACAAAAGATCGAGATGA AAAAAATTGACAATATGAGCAACCTTCAAGTTACCTTCTCGAAGCGCCGTAACGGGCTCTTCAAGAAAGCTAACGAGTTA TGCACCCTTTGTGGTGTAGAGCTCGCTCTCATAGTCTTTTCACCTGGTGAGAAAGCCTTCTCTTTCGGGCACCCTAGCGT GGATGTCATCACCCAACGCTACCTCTCTCAAGCCCCACATCAAACTTCCATCACCATGAGGTACATTGAGGCTCAGCGAA GCGCCAATGTGCGTGACCTCAATGTGCATCTCACCCGAATCAACAACCAGCTGGACGCCGATAGGAAGAACAGTGAGGAG CTTAACCGCATGCGCAAGGAGGCTCAAGCCCAATTCTGGTGGGCTTGTAAGGCGGAGGAGATGAATAGGCCTCAACTTGA GATATTCAGGGAGGCACTAGTCGAGCTTAAGAAGCAAGTCCTTCTCTGCGGTGTTACTACTGCTGCTACCAACCCACCAA TTCATCAATTTGTTGATGGTTTTGGTGGTATCAACAATGACATGATCCATTTCAACAACCCACCGCCTCCACCCCCTCAA GCGTTCCCACAACAAATTTTTCAAGGCCCCATGACGCAGGCTCATCACTCGTTTGGATTTGATAACATGGGAGGGTATGG AGGACCCCTGAATTTTTCTGAGATCTTTCCTTGATGATGATGGTGATGATGCCTATGTTTTTTAATTTACTGTTGTTTTC AATTTCCTAAAGCTGAGGAGATTAACTAGTTTCGTGTATGTGATATGGTTAAGACTGCTCAGGATTTGAATTTTCATTAT TGTTGTAGTTGGGAACTATTATAATGTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0151800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACTCCTGAAACCTCTGGAAAGAAATACAGGGGAAGACAAAAGATCGAGATGAAAAAAATTGACAATATGAGCAA CCTTCAAGTTACCTTCTCGAAGCGCCGTAACGGGCTCTTCAAGAAAGCTAACGAGTTATGCACCCTTTGTGGTGTAGAGC TCGCTCTCATAGTCTTTTCACCTGGTGAGAAAGCCTTCTCTTTCGGGCACCCTAGCGTGGATGTCATCACCCAACGCTAC CTCTCTCAAGCCCCACATCAAACTTCCATCACCATGAGGTACATTGAGGCTCAGCGAAGCGCCAATGTGCGTGACCTCAA TGTGCATCTCACCCGAATCAACAACCAGCTGGACGCCGATAGGAAGAACAGTGAGGAGCTTAACCGCATGCGCAAGGAGG CTCAAGCCCAATTCTGGTGGGCTTGTAAGGCGGAGGAGATGAATAGGCCTCAACTTGAGATATTCAGGGAGGCACTAGTC GAGCTTAAGAAGCAAGTCCTTCTCTGCGGTGTTACTACTGCTGCTACCAACCCACCAATTCATCAATTTGTTGATGGTTT TGGTGGTATCAACAATGACATGATCCATTTCAACAACCCACCGCCTCCACCCCCTCAAGCGTTCCCACAACAAATTTTTC AAGGCCCCATGACGCAGGCTCATCACTCGTTTGGATTTGATAACATGGGAGGGTATGGAGGACCCCTGAATTTTTCTGAG ATCTTTCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0151800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTPETSGKKYRGRQKIEMKKIDNMSNLQVTFSKRRNGLFKKANELCTLCGVELALIVFSPGEKAFSFGHPSVDVITQRY LSQAPHQTSITMRYIEAQRSANVRDLNVHLTRINNQLDADRKNSEELNRMRKEAQAQFWWACKAEEMNRPQLEIFREALV ELKKQVLLCGVTTAATNPPIHQFVDGFGGINNDMIHFNNPPPPPPQAFPQQIFQGPMTQAHHSFGFDNMGGYGGPLNFSE IFP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11945:SF164
11 168 158 1.7E-53 –
PANTHER
PTHR11945
11 168 158 1.7E-53 –
ProSiteProfiles
PS50066
12 72 61 24.838
IPR002100
SMART
SM00432
12 71 60 1.8E-33
IPR002100
SUPERFAMILY
SSF55455
13 92 80 3.14E-27
IPR036879
CDD
cd00265
13 81 69 1.71687E-35
IPR033896
PRINTS
PR00404
14 34 21 8.6E-20
IPR002100
Pfam
PF00319
21 68 48 1.3E-23
IPR002100
Gene3D
G3DSA:3.40.1810.10
24 104 81 6.1E-27
IPR036879
PRINTS
PR00404
34 49 16 8.6E-20
IPR002100
PRINTS
PR00404
49 70 22 8.6E-20
IPR002100
Coils
Coil
110 137 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0151800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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