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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0152300 |
| Transcript ID | LotjaGi5g1v0152300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 28 kDa ribonucleoprotein, chloroplastic; TAIR: AT2G20310.1 RPM1 interacting protein 13; Swiss-Prot: sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab; TrEMBL-Plants: tr|K7LZD9|K7LZD9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0152300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:39788131..39792553) extracted from Lotus japonicus Gifu genome v1.2.
CGTCATTTGGGAATTGAATCCCACCAACGCTTCACGTCACGCAACGCAATGCTGCATCTTCCCTTTCACATTCTCCGCAA AGCTCAGGCAGTTTCTTCTCTTTCACCTCTTCCTCTTCAAACCACTTTCTTCAATTCCCAAATCTAGCATCAAACCCTAG CTTCAATTTCAGATGAATCCCTTACAATTCCCCTTTCTCTTTCTCGCTTGCAATTAACCCTAATTTCACCATGTTTTCTT CATTTACAATCCATTTTTCACACTCCAGTGGTTTTCTGGGTGAATTGACCTAACCCTAATCTATGTTTCTTCCCAATTTT CAATTTTCTTGAAGGGTTTCGAATTTCAAGCCATTGTTATTGTTATTGTTGTTGTTTAGTGTAGAAGCCATGCCTGAGGT GTTGAATATAAGTTCTGATGAAGAAGAGGGTTTGGAGGAGGCAGCAAAAGAAGCGGATTTTGATTGGATCAAAGAGTTGC TGTTTGCATCTGATGGAGAATCTGATGACGATGTTATCATCGTTGGCGAGAAAAAACCTGAATTGAAGTCAAAGTCTTCT ACTACTTTGGCTGTGAAAGATGATGATGATGATGATGAGGATGAGGATGGTGATGATGATGATTGCGTTGTTCTGGAGGG TGATCCGGACAATGGTGTCACTTCTGTGGATGAGGACTCAACTGGGTCGGATGATTTGCTTGTAGTTGGGGAGAAGGGTC AGGTATACTCTTGATTTTGTTGCCGCATTTCGCTTGTAGCGTTTATGAGGAAATTTATTTATGTTTAAACCTTTTGGGTT GATATTTGGAAAGGGAAAGTTTAAATGTTTATTTATTTTGTGTTGTAGACACAAATGTTGCCTTGTTTGCGGTATGTGGT TGTGGGAATTACAGTTACATGCAACTTTATTAGCCTTCGTTGTAGGCTTGATATGTTAGTTTTATGATAGGAAACTCGTT AGCACAACTAAGCGGAAACAATTTACTTTCCATGGTTGTTTTAGCTTTCAGTGGATATCTTATGGTAATGTTGTTTTCTG TCCAAAAAATAACATTTCCAAAAACTTTTTAATTTCATCTTTTGTATTTGATGTCTAGGGTTTGGATTTTTTTTTATCTC GTAGTTGTGTTGGATTTTTATGCATTTCATAGGGCTTCATCTGGCATTAATCATTTCTGACCTACTTTGCAATTGACCTT CACATTCCATTGCAACTTGATTACAGTTTCTTTAATTTAAGATTTTACCATTTTAATTTACTTGTTTCCCAGCTTTGGTT CGCCAAGTAATGTGAGTAGTTTTCTTATCCAAACGTTTCACCTAGATCTATTGGTATCTGGTAAGATTTTTTCCCCCACA TAAAGCATATTTCTTTTGAGTGTGGGTTGTCTCGGTTCATGGAATGGCGGCGAAACCTGATGAGGTTGTTTGTGCATTCT TACATCTAGGATGACATATTGAAAGTTGTCTGTAAACTATCCCTCATGTGGTTTGACGGGTAATGGTTCTTTTTTTTCTT GAGTACTTTAGTGTCAATTTACTATTTCACCATAAGTTGGGTTAGATCTTCCTTATTTGTGCAGCATGCATCATTGCCAA GGTTAGCCTCATGGCATAAGATTGCCACATGAGGAAAGTTAAGATGGCAGAAGATAAAGTTGGAGATGTAGAAGACTTCA ATCCTAGGCCATGTGTGTTGGCTATTACATCTGAGAAAACAGTTTATAAATGAATTCATATTCCAAGATTGAAATTAGAA TTGCTCATCCTGATTGAGACCCTGAGGAATGGATAGAGGTTGCTAACTCTATCCAGATTATATTGAAAGCATAGTTTGAG AGGATTCCTCTATCACAATACCCCATTTTTCAACTTGATGGTTATGATAATTTAGCTATATCTTAACTTTAACGAAGTTC CATAATTCTTAAGAAGCGTGATTGGTAATACATATTACATGTTCAAGCTGGAATATACTCTTTGGTTGGGGCATTTCTTT ATAGTGCAGCTTGCTATCTGCTTTCTCATGTTATTATTTGGTTATCTGTTTTGAGTTTTCTTTTGTTTACAAGCGTAGGC GTGTTTACTCAATTCACTATTCAATTGTTTCTTTGCTTATGGGAGAAGATGCAGCAGTTGCAGTTCAGACAGGGAGGCTT ATTTTCTTCTTTTTTGGCTTGCAGGTTGCATGCAGAGACTATCCTCATGCCCGGCATCTTTGTGCTAAATATCCTTTCTC TTCCACCCCTCATGAGAGACACTGTGATCAGGTAAAGAACTAGAGAAAAATCACATCTTCGGTCTATGTCAAAATTTAGA ACTATTGCAATAGCTTATTTAATTATCATTGTTTATTATGTCTTGTTTGTTATTCAATATTATCCTCCTCACACTCATTT GTTTTTGATGATATGCAGTGTCACTGTTATGTCTGTGACTCTCTAGCACCATGTCCGAATTGGGGCTCTGGAAAGTTGAG TTCAGATCATTGTCATGCAAATGATACAACTGAGGTGTGGAAACTTCAGCGGAAAAATTTCAAGCTGGGCCTGAGTTCCC CATTACCAGCTTCAACTAACTATGGTACTGCCGTCCATGTGGTATATCCCCAACGTAATCTGCGTCGTGAAAATATTCAC TTGCCCTCAAATTCTATGCGACGGTATCAAGGATCCAGATCAAAGGTAACACATACTTGCTTTTCTCTGAACTCCATATC TCAAAATCAGTCCTCTTGGCTCACAATAATGTCTACCCCCTTCCCCTTGTGAAATTCTTGTATGCAGAATCAAGTCTCTA GATCAATCAACATCCCTGTGTGCCCTACAACCACCAACTTAACAGTCACAAATGGTGTAACAATTATAAATGGTGTAATC ACAAATGGTGCAAACCATGGTAGATCTAAGCAATTAGGATCTACTTTGGTGAGAAGGAGAGTCCAACCTATCCCTGTTCC AAATCCAAATCAGTTGCTGGGTGTATGTAGTCATGCTATCCAAAAGGGGCGGGGAAGTGGTGGAAGCAGTTTAGGATCTC AGTTCCTTCGTCCTCATGTGATTTCCAAGCGGGTAGGCAGTTCTAGGGACTTGACAATGAATGATGCTTCTCGTGGTTCA TCTGGCTTCAACACTCAGGTTATTGCGGCACAGCAGCATTACAAATACCCCACTGCCTCAGGGTTCTCAAATCACAGAAA TCGCAATGGAGCAGGCTCAATAAATTCATCAATTTATTCACACCCAAGCTCTGGACCGGCCAGTTTGAGTCGTGCCAACC TGCATACCATGACTGCTGAAACACAGGCATATGGCCAGCCATTGCCCCAATCAAATGATAGCCAGGGTCAATCTTGGATT CCGGTTAATGATGCTCCTTCAAGTTATGTGCCATGTTTGGATAAAAATCAACATGGAAATATGAAACAAAGTCAAGCTAC TACCCAACCAAAATCTTGGATTCCGGTTAATGATGCTCCTTCAAGTTATGTGCCATGTTTGGATAAAAATCAACATGGAA ATATGAAACAAAGTCAAGCTACTACCCAACCAAAACCATGTGAAGAAAGTCGAAGTGGAACTGCCGGGAATTTTTCTGCT GTTGACTTAGGTTGGACAGAGAATACCAGTCAAAGCATTGAACCTGTAATTGATTTTTCTTCTCAACAAAGCTCAGGAAG CGTTGAACCTCCAACTGAATCTTCTCATTTATCCAGTTCAATTGCTGATATTGAAAGCTGGCTTTTTGATAAAGACCTTT TTCCAATGGTAACAGAAGGTGTTTTCCCATCTGAACTGAATATACCATCTCCTGATCTTGACCCAGTTGATACAGGGATG CTCTCATCTCAGTTGTGGTGAATGAGAAGTGACAAGCCAACTAGCATGATGCCTAAAGGCTCATTTTTTTGTCATTGACT CAACGTTGAGTACTTTGACATCATTCATTGAGTTATGACTCAATTTTGATGACTTACTCAGCTGAGTGATTGGCATGTTT CATTGTGTCTCGTATTGAGAGCTGAACATGTTAGATGTTCCTTAGTTCTCATACTTGATGATAAGTTAGATGTATAGTTG CTAGTATAGCTTAATTTAGTTTTTCTTTATTTCGTTGGATGTAGTGAAGGAATGTCTTTGCTTATTATGCTTAGCACCAA CTCATGAGATGTGAATCAGTTAGAAGCGAGTAAAACTAACTGGTAATTTTCAAGTGTTGCGTACTTTATGTTCACATATA CATGATTTTTTAAGTGTTGGGTTCTTTATCATATATACGCTTTCATTTTCGTTTGTGTAATGATGTTTCTTTTTATCAAT ATTTTATGAATAACCTCAACTTTTGAGGTAAGAATAGTGCTTATTTAAATGGAGAATTCTTACTGACTTGACTTTTATAG TAATGTGACATGTTTGAGTGTAG
CDS sequence (LotjaGi5g1v0152300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGAGGTGTTGAATATAAGTTCTGATGAAGAAGAGGGTTTGGAGGAGGCAGCAAAAGAAGCGGATTTTGATTGGAT CAAAGAGTTGCTGTTTGCATCTGATGGAGAATCTGATGACGATGTTATCATCGTTGGCGAGAAAAAACCTGAATTGAAGT CAAAGTCTTCTACTACTTTGGCTGTGAAAGATGATGATGATGATGATGAGGATGAGGATGGTGATGATGATGATTGCGTT GTTCTGGAGGGTGATCCGGACAATGGTGTCACTTCTGTGGATGAGGACTCAACTGGGTCGGATGATTTGCTTGTAGTTGG GGAGAAGGGTCAGGTTGCATGCAGAGACTATCCTCATGCCCGGCATCTTTGTGCTAAATATCCTTTCTCTTCCACCCCTC ATGAGAGACACTGTGATCAGTGTCACTGTTATGTCTGTGACTCTCTAGCACCATGTCCGAATTGGGGCTCTGGAAAGTTG AGTTCAGATCATTGTCATGCAAATGATACAACTGAGGTGTGGAAACTTCAGCGGAAAAATTTCAAGCTGGGCCTGAGTTC CCCATTACCAGCTTCAACTAACTATGGTACTGCCGTCCATGTGGTATATCCCCAACGTAATCTGCGTCGTGAAAATATTC ACTTGCCCTCAAATTCTATGCGACGGTATCAAGGATCCAGATCAAAGAATCAAGTCTCTAGATCAATCAACATCCCTGTG TGCCCTACAACCACCAACTTAACAGTCACAAATGGTGTAACAATTATAAATGGTGTAATCACAAATGGTGCAAACCATGG TAGATCTAAGCAATTAGGATCTACTTTGGTGAGAAGGAGAGTCCAACCTATCCCTGTTCCAAATCCAAATCAGTTGCTGG GTGTATGTAGTCATGCTATCCAAAAGGGGCGGGGAAGTGGTGGAAGCAGTTTAGGATCTCAGTTCCTTCGTCCTCATGTG ATTTCCAAGCGGGTAGGCAGTTCTAGGGACTTGACAATGAATGATGCTTCTCGTGGTTCATCTGGCTTCAACACTCAGGT TATTGCGGCACAGCAGCATTACAAATACCCCACTGCCTCAGGGTTCTCAAATCACAGAAATCGCAATGGAGCAGGCTCAA TAAATTCATCAATTTATTCACACCCAAGCTCTGGACCGGCCAGTTTGAGTCGTGCCAACCTGCATACCATGACTGCTGAA ACACAGGCATATGGCCAGCCATTGCCCCAATCAAATGATAGCCAGGGTCAATCTTGGATTCCGGTTAATGATGCTCCTTC AAGTTATGTGCCATGTTTGGATAAAAATCAACATGGAAATATGAAACAAAGTCAAGCTACTACCCAACCAAAATCTTGGA TTCCGGTTAATGATGCTCCTTCAAGTTATGTGCCATGTTTGGATAAAAATCAACATGGAAATATGAAACAAAGTCAAGCT ACTACCCAACCAAAACCATGTGAAGAAAGTCGAAGTGGAACTGCCGGGAATTTTTCTGCTGTTGACTTAGGTTGGACAGA GAATACCAGTCAAAGCATTGAACCTGTAATTGATTTTTCTTCTCAACAAAGCTCAGGAAGCGTTGAACCTCCAACTGAAT CTTCTCATTTATCCAGTTCAATTGCTGATATTGAAAGCTGGCTTTTTGATAAAGACCTTTTTCCAATGGTAACAGAAGGT GTTTTCCCATCTGAACTGAATATACCATCTCCTGATCTTGACCCAGTTGATACAGGGATGCTCTCATCTCAGTTGTGGTG A
Protein sequence (LotjaGi5g1v0152300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPEVLNISSDEEEGLEEAAKEADFDWIKELLFASDGESDDDVIIVGEKKPELKSKSSTTLAVKDDDDDDEDEDGDDDDCV VLEGDPDNGVTSVDEDSTGSDDLLVVGEKGQVACRDYPHARHLCAKYPFSSTPHERHCDQCHCYVCDSLAPCPNWGSGKL SSDHCHANDTTEVWKLQRKNFKLGLSSPLPASTNYGTAVHVVYPQRNLRRENIHLPSNSMRRYQGSRSKNQVSRSINIPV CPTTTNLTVTNGVTIINGVITNGANHGRSKQLGSTLVRRRVQPIPVPNPNQLLGVCSHAIQKGRGSGGSSLGSQFLRPHV ISKRVGSSRDLTMNDASRGSSGFNTQVIAAQQHYKYPTASGFSNHRNRNGAGSINSSIYSHPSSGPASLSRANLHTMTAE TQAYGQPLPQSNDSQGQSWIPVNDAPSSYVPCLDKNQHGNMKQSQATTQPKSWIPVNDAPSSYVPCLDKNQHGNMKQSQA TTQPKPCEESRSGTAGNFSAVDLGWTENTSQSIEPVIDFSSQQSSGSVEPPTESSHLSSSIADIESWLFDKDLFPMVTEG VFPSELNIPSPDLDPVDTGMLSSQLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 581 | 578 | 4.8E-89 | – | |
| PANTHER | 4 | 581 | 578 | 4.8E-89 | – | |
| MobiDBLite | 47 | 101 | 55 | - | – | |
| MobiDBLite | 47 | 62 | 16 | - | – | |
| MobiDBLite | 63 | 83 | 21 | - | – | |
| MobiDBLite | 358 | 390 | 33 | - | – | |
| MobiDBLite | 405 | 425 | 21 | - | – | |
| MobiDBLite | 405 | 424 | 20 | - | – | |
| MobiDBLite | 436 | 455 | 20 | - | – | |
| MobiDBLite | 469 | 495 | 27 | - | – | |
| MobiDBLite | 566 | 586 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0152300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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