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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0154000 |
Transcript ID | LotjaGi5g1v0154000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Nuclear speckle splicing regulatory protein 1; TAIR: AT2G27285.1 nuclear speckle splicing regulatory-like protein (DUF2040); Swiss-Prot: sp|Q568R1|NSRP1_DANRE Nuclear speckle splicing regulatory protein 1; TrEMBL-Plants: tr|I3SXM2|I3SXM2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0154000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40066711..40068221) extracted from Lotus japonicus Gifu genome v1.2.
GAAACTTTTTCTTCAATCCCTAATGCACAAAGATAGAAGATGGCAATTTGATTCCTCCTTCTTCTACTTCAAGGTTGTGC AGGGGCGGTCGATTAAGCAGAGAAGCCTCTCTTCCTTCTTTCTCACCCGCGCGAGACTGTGAGCTCCATTGCCTTGAAGA AGCCAGGTAAAATGAGCAAGTATGGATTGAACCTTCGGCCTGCGAAGCAGAAGCAGAAGCCACCAAGGCCTCCCCTTGCC ACCCCTTTTGGCTTTAACGATGATGATGAGGATGACGTCGAGAGAGAAATCGCTCTCCAGGCTGCAAAGAAAAAATCTCT CAAGGAAGTTGAGGAACAGCAAAGGAAAGCCTTGGAAGAAGATCCATCCGTATTTGATTATGATGGAGTCTATGACAAAA TGAAAGAGAAAGTTGCAAAACCACTGATACAAGATCGTGAAGAGAGAAAGCCAAAGTATATCCAAAATCTGATTAAAAAA GCAAAAGAGCGAGAGCAGTATCGCGAGATTGTGTACGAGAAAAAGATTGCCATGGAGAGAGACAAAGATGATCATCTCTA TGCTGACAAAGACAAATATGTTACTGAAGCATATAGAAGGAAGCTTGCTGAACGAGAGAGACAGATGGAGCTAGAAAGAA TCCGTGAACTTCAAGAGGAGAGAGATGATGTTACAAAGAAGAAAGACTTTTTGCTTGATTTTTATTCAAACCTTGATAAA AATGTTGCTTATGGAGCAAAAGATGCTCAAGGGAGGAAACGTGACAACCAGGCTGAACATAGAGTTCCAGAGACACATGA GGGAGTGAACCCTGATGCATCAGACAGGCATCATCAGCATGGTGATGCATTTGATGAAAAACAACATTCATTGGGTAACT CAAGTCCACCAGTGGAGTCTTCCAAGGAAAAAATTGGTGATCAGGGTGAACTTTCTAATCCTTCCAATAGAAGTATTAGT CCCTCGGACATGAAGCCAAATCCTGAGGCTCTTGTAGAAGAAGAAAATAAGCCAGTTGAACAGCCATCAGCTTCTCAACC AAAGCTCGATCATCACAAAAGAGGCCAAGATGCTGTGGCTGCAGCAAAGGAACGTTTTCTGGCACGTAAGAAGGCAAAGG AACAGTGAACAATTTCCTGATACATATTTGGTCTTTAGTCTGCGTGCTTGATTTAATATCCATGATGTGATGTTTCCTTA AATGATACAGAGCTATCTGCTAACAGAGTCATAGAATGAATTGATAGGCAGTAGTATTCGATATTTTGCCAATTTTATGA TATCTAAAAAGAAAAACAAAATTCATGCTAGTTTTTGTATGCTTGTGACATGTCTCATTTCCTTTTCAAATTGATCTGGT TACCAAAATTAAGTGATAGTTGGCACATTTTTTCAGCTTTCATATATTAAATATTAAATGTATGTGCAAGTTATGATCCT GTAAAATCTGGTATTTGGTGTCTGATTCAAGATGAATGTGGAAACTGGGTGGAAGGTTTTGTGAATTCAGC
CDS sequence (LotjaGi5g1v0154000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAGTATGGATTGAACCTTCGGCCTGCGAAGCAGAAGCAGAAGCCACCAAGGCCTCCCCTTGCCACCCCTTTTGG CTTTAACGATGATGATGAGGATGACGTCGAGAGAGAAATCGCTCTCCAGGCTGCAAAGAAAAAATCTCTCAAGGAAGTTG AGGAACAGCAAAGGAAAGCCTTGGAAGAAGATCCATCCGTATTTGATTATGATGGAGTCTATGACAAAATGAAAGAGAAA GTTGCAAAACCACTGATACAAGATCGTGAAGAGAGAAAGCCAAAGTATATCCAAAATCTGATTAAAAAAGCAAAAGAGCG AGAGCAGTATCGCGAGATTGTGTACGAGAAAAAGATTGCCATGGAGAGAGACAAAGATGATCATCTCTATGCTGACAAAG ACAAATATGTTACTGAAGCATATAGAAGGAAGCTTGCTGAACGAGAGAGACAGATGGAGCTAGAAAGAATCCGTGAACTT CAAGAGGAGAGAGATGATGTTACAAAGAAGAAAGACTTTTTGCTTGATTTTTATTCAAACCTTGATAAAAATGTTGCTTA TGGAGCAAAAGATGCTCAAGGGAGGAAACGTGACAACCAGGCTGAACATAGAGTTCCAGAGACACATGAGGGAGTGAACC CTGATGCATCAGACAGGCATCATCAGCATGGTGATGCATTTGATGAAAAACAACATTCATTGGGTAACTCAAGTCCACCA GTGGAGTCTTCCAAGGAAAAAATTGGTGATCAGGGTGAACTTTCTAATCCTTCCAATAGAAGTATTAGTCCCTCGGACAT GAAGCCAAATCCTGAGGCTCTTGTAGAAGAAGAAAATAAGCCAGTTGAACAGCCATCAGCTTCTCAACCAAAGCTCGATC ATCACAAAAGAGGCCAAGATGCTGTGGCTGCAGCAAAGGAACGTTTTCTGGCACGTAAGAAGGCAAAGGAACAGTGA
Protein sequence (LotjaGi5g1v0154000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKYGLNLRPAKQKQKPPRPPLATPFGFNDDDEDDVEREIALQAAKKKSLKEVEEQQRKALEEDPSVFDYDGVYDKMKEK VAKPLIQDREERKPKYIQNLIKKAKEREQYREIVYEKKIAMERDKDDHLYADKDKYVTEAYRRKLAERERQMELERIREL QEERDDVTKKKDFLLDFYSNLDKNVAYGAKDAQGRKRDNQAEHRVPETHEGVNPDASDRHHQHGDAFDEKQHSLGNSSPP VESSKEKIGDQGELSNPSNRSISPSDMKPNPEALVEEENKPVEQPSASQPKLDHHKRGQDAVAAAKERFLARKKAKEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 318 | 318 | 9.5E-109 | – | |
MobiDBLite | 1 | 33 | 33 | - | – | |
PANTHER | 1 | 318 | 318 | 9.5E-109 | – | |
Coils | 43 | 64 | 22 | - | – | |
Pfam | 54 | 170 | 117 | 1.8E-33 | ||
Coils | 143 | 170 | 28 | - | – | |
MobiDBLite | 188 | 318 | 131 | - | – | |
MobiDBLite | 189 | 230 | 42 | - | – | |
MobiDBLite | 231 | 266 | 36 | - | – | |
MobiDBLite | 289 | 318 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0154000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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