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LotjaGi5g1v0155600.1

Overview

Field Value
Gene ID LotjaGi5g1v0155600
Transcript ID LotjaGi5g1v0155600.1
Lotus japonicus genome version Gifu v1.2
Description FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0155600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:40277968..40282773) extracted from Lotus japonicus Gifu genome v1.2.

AACAAAAACTCTTTTTTGATTTTTCTGCTTTGTTCTTCATCTCATCCTCTCATCTTCATCATCTTTTGTTTTTTTTTTCC TCTTTGTCTTCTTTTTCTCTTTTCTTCAACTTCATCTCATTTCCATAAACCCATCATCTTCTTCATCTTCATCTATGATT TTCTTCATCAAACCCATCAACCAAAACCCAACAAACATCCAATCCATTCAATCATGTATCAAAACCATAACACATGTCAT CTTCCTTATTGACTGTTCGAGAGTGAACTCACTAAAGCACATCATTGAAACAGAGCTTCCATTGATCCTCAAAGTCTGAA TTAGCAACAATGGTTGACAGGATTAGCAAGTTACCAGATGAAGTTCTGTGTCACATCCTTTCATTTCTCCTGAAGAAGCT GTTACAACAATGGTTCTCTCAAAGAGATGGAAACCACTCTGGCCTTCAGTCTCTACCCTAGACTTGGTCGACGATCGATA TCTCGATGCCAAGGAATCCAAACCATATTCTTCCTTCATCAAATTCGTGTACGCTGCCATTCTCTCACGAGGTTTGAACC AACCCATCAAAAACTTCACCCTCAATTGCGATGACTGTCCAGATTCCGATGTCAAGGTATGGTTGAACGCCGCGATACAA CGTCAACTTGAGAATCTCTATATCGATCTTTCCCCTTCCAGATTGCCTTGCACTATTCTCACCTGCACAACCCTTGCTGT TTTCAAGTTGCGTTTTGTCAAATTTGATGCAATTTCTTATGTTTACCTTCCCTCACTCAAAACACTGCATTTGGAGAATA TTTGGTTTGATAAGCCTCAATTTTTGATGGAGCTTCTTTATGGGTGTCCAGCTCTTGAAGATTTGAAAGCAAATGAGATA ATTTTTCATGATTATTCATTTGAGGGGAAGGTTAGAAGTTTATCCAAGTTGGTCAGAGCAGATGTTTTTTTCGATGAGAA TTTCTTTATTCCTGTGAAAGCTTTTCGTAATGTAGAGTTTCTGCGCATAGATGAGGTTTGTATATTGTAAAGAAGAACTT GTTTAGTTTGTTATTTTTTTTATAGAAGATATTTCTAATACTTCTGAAAATTTCTCTTTAAACTCTTGCAGTGCGATGGG GACATTCCTGTATTTCCCAATTTAACTTGTATGGAGCTCTTCTTGGGAGGATCTATCCAATTTAGTGTGGCACTTGATAT GCTCAATCATTGCCCTAAGCTTCAGGTGGTTGTCTTTAATTTTACTAATGATGATGATGATGATGAAGATGGAGATGTTT GGCCATACCCACAATATGTTCCCGAATGTTTTTCTTCACATCTTACGAAGTGCTTTCTTAAAGATTTTAAAGGACTGGAT CGTCACATGAGATTTGCAAGGTATGTTATGGAAAACTCAACATCGTTACGTACTATGAGTATGACAATTGACAGTTATTG TAAAAATCAAAAGAAAGAGGTTCAAATGATAAAAGAATTGGCCTCATACTCAAGGAGCTCTCCGGTCTGTAAACTTTTAT TTAAGTAATTGATATGCTTCTTAGTCATTGGAAATTATTCGTAAAATGACTGCATTTGTTCTTAGTTTTACATTTAATGT ATCTGCTGGTGCTTTTGATGCAAAACACAGCATCATTATGTGCCATTCCTAATATGGTTTTGGTGCTTTTGATTGACACG AACTTTGTGTGTCATTGTACTATTTCTGCTGATATTGTTTTGGAAATTGCTAATCTCCTGCACTAACTTTTGTGAATGTA ACAGAAACTTGGATAAGAATATATTTCTCAAAGTTGTTGTGTGGATGTGTATTGTGAGTCTTTCCCTTTTAACGTTTGTA GAGGAGAAGAATTTGTGGAGTTTTCATTTAATATTTATTACCAGTACTACTTTGATGTAATTAAAAGCATCTGAGTAAAT GAATATTTTAGCTTGAAAATTACTGATTGCTTCAAGCTTGAATTGATTCTGTATTTTGTATAAAATTAGAAGGGAAAATT TATTTTGACATCATTCATAGTTTAATAATTGATGTTCTTATATGATGAGGCATGGGGTTGAGTTTGTTGAAGTTGAAGAT TGTCAGATTTTGTAACCTTCTAACATTTGCTTTTTTTTAAATGGATGTGCACTGACAGAGATCTATATCCAAATTTAAAT CTAAAAGATGCTTTGATTTTTCAAGATCACATAGGGAACTTGTCTTTTTGAAGATAATGTGATCTTTCCCTTCAATATCT AGGCAAGATGACATGTCATTGGATTTGATTACTAAACTTATAACCTGGACAGAAATATATTTTTTGATTAGTAAACTTAT AAATAATTTCTTCTGTCATTGAACCTACATCTACCTCCATTGGTTGATAAGATAAAACAAGTTTAGTTGGGGAAGTTTCT AAAATTCAAGGACATGGATGATATGTACAATGGTAGATGATTCTTGAGTCATTTGTAGTTTCATTCCTTCCATCTCTCTT CTAACTCATTTCAGATAAGGATAGAAGAACAATTGAATGATACAAGTAAGAATCTAATATATTTCCGTTTTCAAGTCTTC CAAGTGCTGCTAGTTCGTTAAACATGTACAAACATGTACTTAAAGAATCCCAAAACACTAAGTCAAAAACGGAAACATAT ATATATATATATATATATATATATATATATATATATTAAGTCTGCTACTGATTTTTTTACATGATATATGGCATTTAAGT TTGTTTTGGCTATAAAATAAACGAGTCACCTACCATAAGTCCATAAAAGAGTCACTTTTCCACATCTAGCTTTAAGTCCT CGACCCTTTTGCATTTCGGGTCTGTCAAAATTTGAAGTTTCACCCTTCTGCTGTTTGTTGGATATACTTTGGTGTATGGA TCCATCCTGAAGGTAAGGACTATTTTGAATGTAGATTTTGATCAAGTTGCTAGACTCATTTGATGCGTGCTGTCTACATA TGCTGCATGCTTCTACAGCCTTTATGAATATAACAATAAGTCAATATCATGGGAGAAAAGAGCCAAGTGCTCACTCTCTT CTATCACCTTCCCAGACGTTTAAGTACAGGCTTAGCTTAAAGAATAAAGACAAAAGGAGAGCTTTTGTGTTTTCTTATTT TCTTAGATTATATCTGCTTAGACTTGAAGGTGCAGAGTTAGTTTGGGTCTTTATATATAGGAGGGGCTTGACTTGAGAAG GTAGCTCTTCCAATAAGATAACAATCCTCCAATAGACAACTAGGAATGTGCATCTGATGAGAAAATATTCTGTTCATCTT ATTGGCTCGTTTAGTTCTGCTAAACCAAACTAATAGGCATTCACTGAACAGAAAGACATGGAAAATTGGTTGTCTTGTGT GTACTAAATGAACTTTTTCGCCTTATCATGGCTGCAATTAGCAGTCGATGTCATCTACTTCATTGCACTTAGCCACTTAC CAATCATATTAACTATTAATTCATTGCAGTCATCAATCATATTAACTATTAACTGTTGTCTAATCTAATTGGGAATGGTA ATTTTGTGTTTCTATCTTTTATTTGTAGATCCAGGAAAATTCTATTTTTAGAGCCTTAAAGGCTATGAGTTCTCTGAAGA AAATTATGTTTGGCTTTCAAATTTCATAGCATGAACAATTGGCGTTTAGGTTTATTTGCTTTTTAAGGTTGTAGGACTGC ATAGAATTGGAATTAGTTTTATGTATTGTGAAAGACAAGTGTTTCATGTTGGACTCTTTGCTCAGCTTGGCTGCTTCTAT TTTTGTCACTTCCCTGCTTCTATTATTAAAAGTTCATTTTTGTTATTAGATAAAGTGTGTAGTCTTCCTCTTGTAACAAA AAATAAAGATAAAATGTGTTGTTTTATGCTTTGATGCTCTGAGCTTAAATTAGTGAAACATGGATGGAAACTTCTTTAAA GCTTCCTTTTTGGCTTGTTTGAAGGGAAGATGAGTTTATGGGCCCAATGTGAATTTCATAAAGCAGCAAACTGTCTGTAG TAAGTAGCAGATTTCTATATTATAGCTTACCCTATAATAACATGCACAATCCAAGCTTTGTGAAACAAAACCAAATGGAA GTTGGAACTCCGCTATTTTTATGCTGTTGCGTGAGGAATTTGTCTATCCAATTTAAGAGATGGAAATTTAAGTTAGATTT TGAGATCACAAAGAGAACATAAGTCTTGATTATAGCACACCCACGTTTGGTCATGTAGTTGAGCAAGATATAGAAAGCAT CCAAAGAAGACGAGGATGGAGAGTGTTAGAAATATGGAAGAGTAGACAAAAGTCTGTGTCACCGTCTGGTTTTGCTCCCA AGGTTAATAAATAAAGTATCTTGTGATCAATCAAAGCGGAACACACCCCAAGTATGGAGTTCATTACTCTGCTAGCCATG GCCTTTGGAAAATATGCAACAACACGTTCAGGACATAAATCAAGCGTTTTATGTTAGCTCCAGCAACATTCTATGAGGCT CACTAAGGTTTTCAACGGAGATTGACACTGCACACTCCATTACAAGGGTTATCAGGCACCCAATCACACACCTCGTTATT CTGTGAAAAGTTCATGCAATGGTTTTCAGTTGATGGTGGTTTTGGATAATTCAAACTAAGCAATTCAGAAAATCATCTTA TAACTCGAAAATTCATCCCTCTTTCACCATCGTCATCTCCCATCTCTCAATTTAGAAAATTTTGAAGAGCCACTAGGGTG AACCTAATCTCTGGTTATTCCGGGAGAGGTCTACTGGCTCAAGGCCTTTCATCTCTCCAATCCATTCAGAACCTCTCATG AAGAGG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0155600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTCTCTCAAAGAGATGGAAACCACTCTGGCCTTCAGTCTCTACCCTAGACTTGGTCGACGATCGATATCTCGATGC CAAGGAATCCAAACCATATTCTTCCTTCATCAAATTCGTGTACGCTGCCATTCTCTCACGAGGTTTGAACCAACCCATCA AAAACTTCACCCTCAATTGCGATGACTGTCCAGATTCCGATGTCAAGGTATGGTTGAACGCCGCGATACAACGTCAACTT GAGAATCTCTATATCGATCTTTCCCCTTCCAGATTGCCTTGCACTATTCTCACCTGCACAACCCTTGCTGTTTTCAAGTT GCGTTTTGTCAAATTTGATGCAATTTCTTATGTTTACCTTCCCTCACTCAAAACACTGCATTTGGAGAATATTTGGTTTG ATAAGCCTCAATTTTTGATGGAGCTTCTTTATGGGTGTCCAGCTCTTGAAGATTTGAAAGCAAATGAGATAATTTTTCAT GATTATTCATTTGAGGGGAAGGTTAGAAGTTTATCCAAGTTGGTCAGAGCAGATGTTTTTTTCGATGAGAATTTCTTTAT TCCTGTGAAAGCTTTTCGTAATGTAGAGTTTCTGCGCATAGATGAGTGCGATGGGGACATTCCTGTATTTCCCAATTTAA CTTGTATGGAGCTCTTCTTGGGAGGATCTATCCAATTTAGTGTGGCACTTGATATGCTCAATCATTGCCCTAAGCTTCAG GTGGTTGTCTTTAATTTTACTAATGATGATGATGATGATGAAGATGGAGATGTTTGGCCATACCCACAATATGTTCCCGA ATGTTTTTCTTCACATCTTACGAAGTGCTTTCTTAAAGATTTTAAAGGACTGGATCGTCACATGAGATTTGCAAGGTATG TTATGGAAAACTCAACATCGTTACGTACTATGAGTATGACAATTGACAGTTATTGTAAAAATCAAAAGAAAGAGGTTCAA ATGATAAAAGAATTGGCCTCATACTCAAGGAGCTCTCCGGTCTGTAAACTTTTATTTAAGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0155600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLSKRWKPLWPSVSTLDLVDDRYLDAKESKPYSSFIKFVYAAILSRGLNQPIKNFTLNCDDCPDSDVKVWLNAAIQRQL ENLYIDLSPSRLPCTILTCTTLAVFKLRFVKFDAISYVYLPSLKTLHLENIWFDKPQFLMELLYGCPALEDLKANEIIFH DYSFEGKVRSLSKLVRADVFFDENFFIPVKAFRNVEFLRIDECDGDIPVFPNLTCMELFLGGSIQFSVALDMLNHCPKLQ VVVFNFTNDDDDDEDGDVWPYPQYVPECFSSHLTKCFLKDFKGLDRHMRFARYVMENSTSLRTMSMTIDSYCKNQKKEVQ MIKELASYSRSSPVCKLLFK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.80.10.10
1 329 329 5.5E-12
IPR032675
PANTHER
PTHR32212:SF263
2 337 336 5.7E-65 –
PANTHER
PTHR32212
2 337 336 5.7E-65 –
SUPERFAMILY
SSF52047
82 247 166 1.33E-9 –
Pfam
PF07723
122 147 26 5.7E-5
IPR013101
Pfam
PF08387
263 305 43 2.9E-11
IPR006566
SMART
SM00579
267 340 74 7.3E-9
IPR006566

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0155600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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