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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0156100 |
| Transcript ID | LotjaGi5g1v0156100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56380.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM93|FBD38_ARATH FBD-associated F-box protein At5g56380; TrEMBL-Plants: tr|I3S460|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0156100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40485588..40489388) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAAAACCCTCAATAGTCACATACGTTCTCTGCCTCTCTGTTTTCTCTCACGCACGCAGCATGCTCTCGGCCTCTC TCTATTCTCAGTCGGCTGTCACGGCGTCTCTGCCTCTCTCAGTCTCTCTGCAGTCTGCACGCACGAAGTAATGTTTTCTT ACTTCTCAGTTTCAATTTCTTTGTATTGGGTTTTCTGAATTCTCATTCTGGAAAAGGGTTTGGGACTTTGGGTTCTTGTT GTTTGTTCTACCAATATTCTTGTTCTAGGGTTTGATAGAAGTAGAACATACAAGGAATGTTGATGAGGAAATTGAAATTG ATATCTCACTATCTCACTATCTCTGTTGACAAAATTAAAATTGAATTGATTATTGATGTCTTCTGTTTTTCATAAACTAA ACAAGCAGCTAACAGTGTCCTCCATACAATTGTATTTCACTTCTGTTCAGCAAGTTGTGTTTCCTCAGGCTATGGACATC TAATGATAGCTGGAATGAAATAAAATAAGATGAGATGGAACGTGAGAGAGACATTGGGGGGGGGGGGGGTTTGCTGCTGT TGCGTGATGCTACTGATAGTCATTGGGGGTTTTTGCTGCTTTCTCCTTGGCGTAAGGGACTTGCTACATCCCCTTCGTTT AGGCCTTGAGTTAAGAGCATAAGTTTGCTCCTGGTGTTATTTCTATTGAGAGCTTTGGCTGATCTTGTTTTCTTTGTGCC TACTCTGTTACCAGTTCTTGTTTTTCGTTTATTCTTGATCATGTCGGGTCTTTATCTTGCCTGTGTTACTCTATATGTTT GTAGTTTATTGGTTATTTGGCCCTCTTTTCCCTACAAGAGAAGGTTGTTCTCATGCTATCTATCATTATATATATTATTC TCTTTTCGAGAAAAATATAGCTATCATTCCATTATTGATTATTTGTATATAGCTATCGTCCTGCATTTTCTTTACTATAC TGTTGTTTTCAATTTGTTTCTTTTGTTATATTTCGTTGTAAGCCTAGTTCTTTCCATGAGAAACTTTCTCTCATGGTTTT ATCTATAGTATTTCTCTTTTTCGAAAAAAAAAATATTTTCAATATATTTTCGTCTATAATTTCTTTTATGTTTAGCCACA CTGATATAATAGGTCTGGATCCGCCCCTGGAGGCATGAGTCACTTTCAATGATTATGTTATGAATGAGCAGTTGATGACA CAAGGATAAAGCCTCATGGATTGCTATAACTTCAGCTTTCAAACGCAAATCCGTGCCCTATATTCTTTGAAAAGAATCCT TTTATCTCATTCTTCGCATTTCGTAAGATTCCTCCAATTCCTCATGACCTTGGGCTACCTTTTGCTGCCCCATCGACATT GACCTTCATAATTCCATCTGCCGGAAGGGACCAAGTCGAATTTCTCTTCTTCTTTAGTCGTGGCTGTAGTCTTATGTGTG TGAAATCTCTAGCAAAATGTTCCAGACTATATACATTTCTATTGTTCAGTGCTTTGATCCACCACCCAATTCTTAGCAAG TGCATCTCCCAGACATTTGCTAAATTAATATCCTTATTGCTGAAACAGCTTCCATTAAGTTCGAGCCATAACGACCATAG TAATGAATAGGGGATGAGGCTCCATAAGGTTCTGTCAGAAAGAAGTACATGGTATGTGCGAACTGCAGCTAGTAATTCTT GAGTTTTGTACGAATTTGTCCTTATCAGAAATTGTATCACTTGTTTGCATTCATGATACTTCTCTGTAATGTTATGAAAA TTGGGCTGGTTTTGGAGTTGGCAGTCATGTCAGTGTTACATTTTTGAAACATTGAAGAATGAAGATAGAGTGTCATAAAA AACAAATTGGGCTGGTTGGTTCACATACTTTTTTTTTAACTGTATTTTAACTTTAAAAAAAAACTTCTTAAGCTTTAAAT ATTATAATCTAAATTTTTATGTAAAGTATATATATATATATATATATATATTAAGCCACCTACCAATCAAGACTGTCAAT AATATATGCTGGAACCCTATTCTTTTGTTACAGGAGGAACCCTATCTGCTTTATTCGACTCTTTGAGGGAGAAACTCGCT GAAGTGCATACTGTTACGGAGCTTCCATTGCTCCTCCCAGATTAGCAATGTGGATAGGATTAGCATTTGCCAGATGAAAT TTTTTGTGACATCCTCTCGTTTCTTCCAACTGAAGAGGCTGTTTCAACAATGGTTCTCTCAAAGAGGTGGAAACCACTCT GGCTTTCAGTCCCTATCCTAGACTTTCACCAAGATCGATATCTCCAAGGGAAGGAATCGAAATCGTACTCTGACTTCAGC AATTTCGTATCCGCTACTATCCTTTCACGAGGTTTGCATCAACCCATCAAAAACTTTACCCTCAGAACAGGTGACGATTG TCCATCTTCCGATGTCAAGGAATGGTTAAAAGCAGCAAAAAAATGCCAAGTTGAGAAACTCGAAATTTGGTATCCCGATT CACCAGTGCCTCACTATATTTTCAGATGCACAACCCTAGTTGTTCTCAAGCTATATGAGACATATTTTGAAGCTTTTTCT TCTGTGCACCTGCCCTTGCTCAAAACACTGTATATGCACTATGTTCAGTTTATAAACCCTCAATTTTTGATGAACCTTCT TTATGGGTGTCCTGTTCTTGAAGATTTGGAAATACTTCACGTATATTTTGATGACTCAGATTTGGGATCGAATGACACGT CTTTTAATGACTCTCCCTTTGAGGGGCAGGTTAAAAGTTTATCCAATTTGGTCAGAGCTAAGGTTTTTTTTCACCTTGCT TTCCATATTCCTGTGAAAGCTTTTTCCAATGCACAGTTTCTGCACTTAAACAAGGTCTGTTACTTTGTATATGAAAAAGG TGAATGTGTTGACTTTGTTATTTTTTTCCTTTACACTACAGAAAATGTCTGATAATTTATCTTTAAAACTCTTGCAGTGT GATGCAGGCATTCCTGTATTTCCCAATTTAACTTATCTGGAGATCTCCTTCAAACGACACTCTCTTAAATGGAATTTGGT GCTTGATATGCTCAATCATTGTCCTAAGCTTCAAACGGTTGTCTTTGACATACGTCTTGATGATGATGAGGTTTGGCCAG ACCCAGGTTTTATTCCTAAATGCTTTTCTACGCATCTTAGGAAGTGCTTTATTAAAGGTTATGCAGGAGTGGATTGTCAG ATGAGATTTGCAAGATATGTTTTGCAAAACGCAACCTTGTTACGTTCCCTGATCATTTGCAGTCGGTATTCCCAAAATCA TCAGAGAAAGCTTGAAATGATAACAGAATTGGCCTCATATCCAAGGAGCTCTGCAGTTTGTGAACTTCTATTTAAGTGAT TTATATGCTTGTTAGTAGTTGGAAATTATTCCTAAAGTGGATGACTGCATTTGTTCATAGTTTAATGTATCTGCTGGTTT TGGTGCTTTTGTTAGACACAAACTTTGTGTGTTTCTCCTGTTATTGTTTTGAAAATTGCTGATCTTATGCACTCCAACTC TACTTTTGTAAATCTGACAAACTGAAATGAGAGTAGATTTTCTAATTTGTTGTGTGGATGTGTATGCGTGTGAGTCTTAG ACCTTTGAAACTTCCTAGAGGAGAAGAATCTGTGGAGTTCTTATTTAATATTCATTACAAGTCCTACTTTGTAGTAATTA AAAGCACTTGAGAAAATGAATTATTTTAGCTTGAAAATTACTGATTGCTTCAAGCTTGAATTGATTCAGTATTTTGTATA AAGTTAGAAGGGAATTTTTATTTTAACATTATTCATAAATT
CDS sequence (LotjaGi5g1v0156100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTCTCAAAGAGGTGGAAACCACTCTGGCTTTCAGTCCCTATCCTAGACTTTCACCAAGATCGATATCTCCAAGG GAAGGAATCGAAATCGTACTCTGACTTCAGCAATTTCGTATCCGCTACTATCCTTTCACGAGGTTTGCATCAACCCATCA AAAACTTTACCCTCAGAACAGGTGACGATTGTCCATCTTCCGATGTCAAGGAATGGTTAAAAGCAGCAAAAAAATGCCAA GTTGAGAAACTCGAAATTTGGTATCCCGATTCACCAGTGCCTCACTATATTTTCAGATGCACAACCCTAGTTGTTCTCAA GCTATATGAGACATATTTTGAAGCTTTTTCTTCTGTGCACCTGCCCTTGCTCAAAACACTGTATATGCACTATGTTCAGT TTATAAACCCTCAATTTTTGATGAACCTTCTTTATGGGTGTCCTGTTCTTGAAGATTTGGAAATACTTCACGTATATTTT GATGACTCAGATTTGGGATCGAATGACACGTCTTTTAATGACTCTCCCTTTGAGGGGCAGGTTAAAAGTTTATCCAATTT GGTCAGAGCTAAGGTTTTTTTTCACCTTGCTTTCCATATTCCTGTGAAAGCTTTTTCCAATGCACAGTTTCTGCACTTAA ACAAGTGTGATGCAGGCATTCCTGTATTTCCCAATTTAACTTATCTGGAGATCTCCTTCAAACGACACTCTCTTAAATGG AATTTGGTGCTTGATATGCTCAATCATTGTCCTAAGCTTCAAACGGTTGTCTTTGACATACGTCTTGATGATGATGAGGT TTGGCCAGACCCAGGTTTTATTCCTAAATGCTTTTCTACGCATCTTAGGAAGTGCTTTATTAAAGGTTATGCAGGAGTGG ATTGTCAGATGAGATTTGCAAGATATGTTTTGCAAAACGCAACCTTGTTACGTTCCCTGATCATTTGCAGTCGGTATTCC CAAAATCATCAGAGAAAGCTTGAAATGATAACAGAATTGGCCTCATATCCAAGGAGCTCTGCAGTTTGTGAACTTCTATT TAAGTGA
Protein sequence (LotjaGi5g1v0156100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSKRWKPLWLSVPILDFHQDRYLQGKESKSYSDFSNFVSATILSRGLHQPIKNFTLRTGDDCPSSDVKEWLKAAKKCQ VEKLEIWYPDSPVPHYIFRCTTLVVLKLYETYFEAFSSVHLPLLKTLYMHYVQFINPQFLMNLLYGCPVLEDLEILHVYF DDSDLGSNDTSFNDSPFEGQVKSLSNLVRAKVFFHLAFHIPVKAFSNAQFLHLNKCDAGIPVFPNLTYLEISFKRHSLKW NLVLDMLNHCPKLQTVVFDIRLDDDEVWPDPGFIPKCFSTHLRKCFIKGYAGVDCQMRFARYVLQNATLLRSLIICSRYS QNHQRKLEMITELASYPRSSAVCELLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 335 | 335 | 2.0E-15 | ||
| PANTHER | 2 | 345 | 344 | 4.7E-66 | – | |
| PANTHER | 2 | 345 | 344 | 4.7E-66 | – | |
| SUPERFAMILY | 92 | 256 | 165 | 4.32E-12 | – | |
| Pfam | 273 | 315 | 43 | 7.9E-12 | ||
| SMART | 276 | 348 | 73 | 2.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0156100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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