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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0158900 |
| Transcript ID | LotjaGi5g1v0158900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G33400.1 FK506-binding nuclear-like protein; Swiss-Prot: sp|Q4V786|NFIP1_XENTR NEDD4 family-interacting protein 1; TrEMBL-Plants: tr|V7BGU7|V7BGU7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0158900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40854648..40856338) extracted from Lotus japonicus Gifu genome v1.2.
TCGAGCCCACAATCATCATTAAAAGCCTAACGTTAGCATTTTCGAAATTCGTTGGAGCCAAACGGCTTTTAAACTTGTCA CATGTTCTCTCTCTCTGGGTGGCATGGCATGTATGTCAGATTCTGATCTAGTTGCTTTCATTATTATTATATGACACCAT ATATATCAACAACATTCCTCACACTCTTCTTCTTCTTCTCTTCCCAGTAGAGGGCCCTTGAGATGGGTTGTTTCCTGGCA TGCTTTGGTTTATCCAACAAGAGAAAGCGTAGAAAGACCCTCTACAATGTCCTAGCTGGAGGACACCAAGTAAGCAAGCA CAACAAAACCCATCTTTAATCTTCAACCTTTTCATCACACCATGCATCACTCTTTCATTATTTGTATGATCTAAGAAGAA GCATGTTCAAATTTAATGGAATATCTGTTTTAAGTTCGAAAGAGTTGTGTTATCTTGCAGAAATATGGAAACTATGAAGT TCTTGCCACAACAGAAAAATCCATTATTCCATATTCTGGTGTCAGGTTAGCATTTATTTATCTCTTCATTTTCCCTTAAT ATTTCATGAGTGGATATGGTAGATTATTTATGTTATTGGTTAGGGACAGAGATAAGAGAAAGGAGCAGAATGGTGTCAAA AGCAAGAAGAAGAAGAAAGTTACCTTCAATTTGAATGTACAGATATATGAGCCAGATCCCACTGCTTATCAGGTATTGAA TAATGAAGAAGAAGAAGAAAATAAGAACACTAAAGCAGAATCAGAAGGAAAGAGCTCAACTTCTTCCATCTTGGGAGAAG AATCTGCAGATTTGGGAATGAGATACCCTTCCAATTACAGATACTACAACTGCAGGGATAACTATGATGAGGAGGAGGAT GAAATTACATATGAGGAATCTGACATCGATCTCTCTGATGATGATGAATTTGATGATAGTTGGAGTGAGCAAAGTTTAGA AAATGATGAGGCTGAAGTATATGACAAGAACAGTGAACAGAATCAGAGGCCACTTGCTCCAAATGGTGCTGATGTGAAAT CCGATTCAAGTGGACGAGGCCGGAGCATAAACACGCATTCTGTTCTAATCCCAGTGGAGAATCTCACTCAGTGGAAAGCA ATCAAGGCAAAAGTTGCATCAAGTAAGCACAGGAGCAAGGAGAATGTTCCATTAGAGCAAAAGACAAGCTTGAATTTGTC ACCTTGCAGCTTAGAATCAAATGCCCTTCAGTCCAAGCCTCTGTTGCAGGAAATTGCAGTTGATGCTAGTCTTTCAAACT GGTTGATTGCTCCTAATAATCATGTCCCCAAGGCCACAATTCATTGTCAATGATGCAGCCATGTCATTCAGAAACTTGGA AAATATCAATTCCATTAACAGAGCAATTTTTAATTGGTGAAGATTACACATGAAGGAGCAATACAACACTCCCAGACACC AATTTTAAAGGACGATGCAGCAAAGCATGATTCTTGTTTAGATTATTCATTAAGCAGAAAGACAGTTGGCATGATTTCAT CTAGTATGTGTGTCTAATTCTTATACTGTATTTTGATTTGTTTTGTTTTGTTAAAGGTTGTGTTGTGATCAATGGAGAGT GTGTTTGTCTGTTTATATTCACAGCTCTTGCTCATATTATGTGATAGGAGAAGAAGTGAAAGAGAGGAGAAAGAGAGAGA AAGAGAGAGAA
CDS sequence (LotjaGi5g1v0158900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGTTTCCTGGCATGCTTTGGTTTATCCAACAAGAGAAAGCGTAGAAAGACCCTCTACAATGTCCTAGCTGGAGG ACACCAAAAATATGGAAACTATGAAGTTCTTGCCACAACAGAAAAATCCATTATTCCATATTCTGGTGTCAGAGATAAGA GAAAGGAGCAGAATGGTGTCAAAAGCAAGAAGAAGAAGAAAGTTACCTTCAATTTGAATGTACAGATATATGAGCCAGAT CCCACTGCTTATCAGGTATTGAATAATGAAGAAGAAGAAGAAAATAAGAACACTAAAGCAGAATCAGAAGGAAAGAGCTC AACTTCTTCCATCTTGGGAGAAGAATCTGCAGATTTGGGAATGAGATACCCTTCCAATTACAGATACTACAACTGCAGGG ATAACTATGATGAGGAGGAGGATGAAATTACATATGAGGAATCTGACATCGATCTCTCTGATGATGATGAATTTGATGAT AGTTGGAGTGAGCAAAGTTTAGAAAATGATGAGGCTGAAGTATATGACAAGAACAGTGAACAGAATCAGAGGCCACTTGC TCCAAATGGTGCTGATGTGAAATCCGATTCAAGTGGACGAGGCCGGAGCATAAACACGCATTCTGTTCTAATCCCAGTGG AGAATCTCACTCAGTGGAAAGCAATCAAGGCAAAAGTTGCATCAAGTAAGCACAGGAGCAAGGAGAATGTTCCATTAGAG CAAAAGACAAGCTTGAATTTGTCACCTTGCAGCTTAGAATCAAATGCCCTTCAGTCCAAGCCTCTGTTGCAGGAAATTGC AGTTGATGCTAGTCTTTCAAACTGGTTGATTGCTCCTAATAATCATGTCCCCAAGGCCACAATTCATTGTCAATGA
Protein sequence (LotjaGi5g1v0158900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCFLACFGLSNKRKRRKTLYNVLAGGHQKYGNYEVLATTEKSIIPYSGVRDKRKEQNGVKSKKKKKVTFNLNVQIYEPD PTAYQVLNNEEEEENKNTKAESEGKSSTSSILGEESADLGMRYPSNYRYYNCRDNYDEEEDEITYEESDIDLSDDDEFDD SWSEQSLENDEAEVYDKNSEQNQRPLAPNGADVKSDSSGRGRSINTHSVLIPVENLTQWKAIKAKVASSKHRSKENVPLE QKTSLNLSPCSLESNALQSKPLLQEIAVDASLSNWLIAPNNHVPKATIHCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 284 | 284 | 1.1E-90 | – | |
| PANTHER | 1 | 284 | 284 | 1.1E-90 | ||
| MobiDBLite | 90 | 117 | 28 | - | – | |
| MobiDBLite | 140 | 169 | 30 | - | – | |
| MobiDBLite | 140 | 206 | 67 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Male meiosis II | A cell cycle process comprising the steps by which a cell progresses through male meiosis II, the second meiotic division in the male germline. |
Expression pattern of LotjaGi5g1v0158900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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