Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0158900 |
| Transcript ID | LotjaGi5g1v0158900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G33400.1 FK506-binding nuclear-like protein; Swiss-Prot: sp|Q4V786|NFIP1_XENTR NEDD4 family-interacting protein 1; TrEMBL-Plants: tr|A0A0L9VBM0|A0A0L9VBM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0158900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40854685..40856330) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTCGAAATTCGTTGGAGCCAAACGGCTTTTAAACTTGTCACATGTTCTCTCTCTCTGGGTGGCATGGCATGTATGTC AGATTCTGATCTAGTTGCTTTCATTATTATTATATGACACCATATATATCAACAACATTCCTCACACTCTTCTTCTTCTT CTCTTCCCAGTAGAGGGCCCTTGAGATGGGTTGTTTCCTGGCATGCTTTGGTTTATCCAACAAGAGAAAGCGTAGAAAGA CCCTCTACAATGTCCTAGCTGGAGGACACCAAGTAAGCAAGCACAACAAAACCCATCTTTAATCTTCAACCTTTTCATCA CACCATGCATCACTCTTTCATTATTTGTATGATCTAAGAAGAAGCATGTTCAAATTTAATGGAATATCTGTTTTAAGTTC GAAAGAGTTGTGTTATCTTGCAGAAATATGGAAACTATGAAGTTCTTGCCACAACAGAAAAATCCATTATTCCATATTCT GGTGTCAGGTTAGCATTTATTTATCTCTTCATTTTCCCTTAATATTTCATGAGTGGATATGGTAGATTATTTATGTTATT GGTTAGGGACAGAGATAAGAGAAAGGAGCAGAATGGTGTCAAAAGCAAGAAGAAGAAGAAAGTTACCTTCAATTTGAATG TACAGATATATGAGCCAGATCCCACTGCTTATCAGGTATTGAATAATGAAGAAGAAGAAGAAAATAAGAACACTAAAGCA GAATCAGAAGGAAAGAGCTCAACTTCTTCCATCTTGGGAGAAGAATCTGCAGATTTGGGAATGAGATACCCTTCCAATTA CAGATACTACAACTGCAGGGATAACTATGATGAGGAGGAGGATGAAATTACATATGAGGAATCTGACATCGATCTCTCTG ATGATGATGAATTTGATGATAGTTGGAGTGAGCAAAGTTTAGAAAATGATGAGGCTGAAGTATATGACAAGAACAGTGAA CAGAATCAGAGGCCACTTGCTCCAAATGGTGCTGATGTGAAATCCGATTCAAGTGGACGAGGCCGGAGCATAAACACGCA TTCTGTTCTAATCCCAGTGGAGAATCTCACTCAGTGGAAAGCAATCAAGGCAAAAGTTGCATCAAGTAAGCACAGGAGCA AGGAGAATGTTCCATTAGAGCAAAAGACAAGCTTGAATTTGTCACCTTGCAGCTTAGAATCAAATGCCCTTCAGTCCAAG CCTCTGTTGCAGGAAATTGCAGTTGATGCTAGTCTTTCAAACTGGTTGATTGCTCCTAATAATCATGTCCCCAAGGCCAC AATTCATTGTCAATGATGCAGCCATGTCATTCAGAAACTTGGAAAATATCAATTCCATTAACAGAGCAATTTTTAATTGG TGAAGATTACACATGAAGGAGCAATACAACACTCCCAGACACCAATTTTAAAGGACGATGCAGCAAAGCATGATTCTTGT TTAGATTATTCATTAAGCAGAAAGACAGTTGGCATGATTTCATCTAGTATGTGTGTCTAATTCTTATACTGTATTTTGAT TTGTTTTGTTTTGTTAAAGGTTGTGTTGTGATCAATGGAGAGTGTGTTTGTCTGTTTATATTCACAGCTCTTGCTCATAT TATGTGATAGGAGAAGAAGTGAAAGAGAGGAGAAAGAGAGAGAAAG
CDS sequence (LotjaGi5g1v0158900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGTTTCCTGGCATGCTTTGGTTTATCCAACAAGAGAAAGCGTAGAAAGACCCTCTACAATGTCCTAGCTGGAGG ACACCAAAAATATGGAAACTATGAAGTTCTTGCCACAACAGAAAAATCCATTATTCCATATTCTGGTGTCAGGGACAGAG ATAAGAGAAAGGAGCAGAATGGTGTCAAAAGCAAGAAGAAGAAGAAAGTTACCTTCAATTTGAATGTACAGATATATGAG CCAGATCCCACTGCTTATCAGGTATTGAATAATGAAGAAGAAGAAGAAAATAAGAACACTAAAGCAGAATCAGAAGGAAA GAGCTCAACTTCTTCCATCTTGGGAGAAGAATCTGCAGATTTGGGAATGAGATACCCTTCCAATTACAGATACTACAACT GCAGGGATAACTATGATGAGGAGGAGGATGAAATTACATATGAGGAATCTGACATCGATCTCTCTGATGATGATGAATTT GATGATAGTTGGAGTGAGCAAAGTTTAGAAAATGATGAGGCTGAAGTATATGACAAGAACAGTGAACAGAATCAGAGGCC ACTTGCTCCAAATGGTGCTGATGTGAAATCCGATTCAAGTGGACGAGGCCGGAGCATAAACACGCATTCTGTTCTAATCC CAGTGGAGAATCTCACTCAGTGGAAAGCAATCAAGGCAAAAGTTGCATCAAGTAAGCACAGGAGCAAGGAGAATGTTCCA TTAGAGCAAAAGACAAGCTTGAATTTGTCACCTTGCAGCTTAGAATCAAATGCCCTTCAGTCCAAGCCTCTGTTGCAGGA AATTGCAGTTGATGCTAGTCTTTCAAACTGGTTGATTGCTCCTAATAATCATGTCCCCAAGGCCACAATTCATTGTCAAT GA
Protein sequence (LotjaGi5g1v0158900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCFLACFGLSNKRKRRKTLYNVLAGGHQKYGNYEVLATTEKSIIPYSGVRDRDKRKEQNGVKSKKKKKVTFNLNVQIYE PDPTAYQVLNNEEEEENKNTKAESEGKSSTSSILGEESADLGMRYPSNYRYYNCRDNYDEEEDEITYEESDIDLSDDDEF DDSWSEQSLENDEAEVYDKNSEQNQRPLAPNGADVKSDSSGRGRSINTHSVLIPVENLTQWKAIKAKVASSKHRSKENVP LEQKTSLNLSPCSLESNALQSKPLLQEIAVDASLSNWLIAPNNHVPKATIHCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 286 | 286 | 1.7E-91 | – | |
| PANTHER | 1 | 286 | 286 | 1.7E-91 | ||
| MobiDBLite | 92 | 119 | 28 | - | – | |
| MobiDBLite | 142 | 171 | 30 | - | – | |
| MobiDBLite | 142 | 208 | 67 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Male meiosis II | A cell cycle process comprising the steps by which a cell progresses through male meiosis II, the second meiotic division in the male germline. |
Expression pattern of LotjaGi5g1v0158900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…