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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0159200 |
| Transcript ID | LotjaGi5g1v0159200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor family protein; TAIR: AT5G60440.1 AGAMOUS-like 62; Swiss-Prot: sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62; TrEMBL-Plants: tr|K7KZN0|K7KZN0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0159200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40904943..40906034) extracted from Lotus japonicus Gifu genome v1.2.
ACCGGACAGTGTGTGTCTTTTTCTGACGGCGTTGTTCTTGTTCCTCTGTTTCTTTTCCACGCTTTGTTTGTTTTCTTGTT CTTGAATTTGCAAATTGCAATGGCACCTTCACAACCACGATCCAAACGAAACACCACCACGATCACGATGGAGAAGAAGA AAACGCAAGCAGACAAACGACGCAATCAATTGTCGTTCTCCAAGCGGAGGAACGGCCTCTTCAACAAGCTCACCGAGCTC TCCATTCTCTGCCAATCGGAAACCGCATTGATCGTCACCTCAAAGAACAACGACGGCGGCGGCGGTGAGATCTTCGCGTG CGGTTACCCCTCGCCGGACGCTGTTATACGGCGGTTTCTCACTGGAGGGAAGGCGCCGCTCCCCGCCCAGCGGTGGCGGG AGGAGAAGGTGGAAGCACATAGGTCTGAGTATGAGGGTATGCAGGAACGGTTGAAAGAAGAGCAGAGGAAGCTGCAAGCG ATTATTGAGGAGAAAGAGAATAAGGGTTTTGTGTTTCCTTCTTGGTGGGAAACCCCCATTGACGACATGGGTTTGGATAG TGTTGAACAGTTGAAGAATTCTATGGAGATTTTGAAGCTTAACCTGATTGCGCGCCAAAGGTACTGTGAGATGATTCCGC TGGTGGCTCCTCCTCCTCCTCCGCCTCAGGCGATGGCTGCTCTGCCCCCGCAGCCGCCATTGACGAACTCGCCGCCGGTA CTGGATGCTAGATTCGGTGTTTGGGTTCCATGCGGCCACAGAGTTTCTAAATTCACTCCGGTCATAGAATCTAATTAACT TTGGAAGTAACAGTACTACACTCTCATGATTCCTCCTATATAATGTGATGTGAAAAGAAGAATCAAGATGAGATGATGGC TATATTAATTGGTTAGGTGTTTAAATCTTAGGATTGATATTATTTTTAGCATAACATGACTTTCTATAAGCTTGTGCTTC TGGTAGATTATAAATTGTGCTTCATTGGTACATTTTTCTGTGGAATAATTGCTACATGTGAATATAAGTGTATTTTGACT TTTTTCTTCTTCTTCTTCTTCTTTTATTTTTTCAATCCCTTGTGTGATAGAG
CDS sequence (LotjaGi5g1v0159200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCTTCACAACCACGATCCAAACGAAACACCACCACGATCACGATGGAGAAGAAGAAAACGCAAGCAGACAAACG ACGCAATCAATTGTCGTTCTCCAAGCGGAGGAACGGCCTCTTCAACAAGCTCACCGAGCTCTCCATTCTCTGCCAATCGG AAACCGCATTGATCGTCACCTCAAAGAACAACGACGGCGGCGGCGGTGAGATCTTCGCGTGCGGTTACCCCTCGCCGGAC GCTGTTATACGGCGGTTTCTCACTGGAGGGAAGGCGCCGCTCCCCGCCCAGCGGTGGCGGGAGGAGAAGGTGGAAGCACA TAGGTCTGAGTATGAGGGTATGCAGGAACGGTTGAAAGAAGAGCAGAGGAAGCTGCAAGCGATTATTGAGGAGAAAGAGA ATAAGGGTTTTGTGTTTCCTTCTTGGTGGGAAACCCCCATTGACGACATGGGTTTGGATAGTGTTGAACAGTTGAAGAAT TCTATGGAGATTTTGAAGCTTAACCTGATTGCGCGCCAAAGGTACTGTGAGATGATTCCGCTGGTGGCTCCTCCTCCTCC TCCGCCTCAGGCGATGGCTGCTCTGCCCCCGCAGCCGCCATTGACGAACTCGCCGCCGGTACTGGATGCTAGATTCGGTG TTTGGGTTCCATGCGGCCACAGAGTTTCTAAATTCACTCCGGTCATAGAATCTAATTAA
Protein sequence (LotjaGi5g1v0159200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSQPRSKRNTTTITMEKKKTQADKRRNQLSFSKRRNGLFNKLTELSILCQSETALIVTSKNNDGGGGEIFACGYPSPD AVIRRFLTGGKAPLPAQRWREEKVEAHRSEYEGMQERLKEEQRKLQAIIEEKENKGFVFPSWWETPIDDMGLDSVEQLKN SMEILKLNLIARQRYCEMIPLVAPPPPPPQAMAALPPQPPLTNSPPVLDARFGVWVPCGHRVSKFTPVIESN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| MobiDBLite | 13 | 28 | 16 | - | – | |
| PANTHER | 16 | 205 | 190 | 1.5E-45 | – | |
| PANTHER | 16 | 205 | 190 | 1.5E-45 | – | |
| SMART | 17 | 77 | 61 | 2.6E-8 | ||
| SUPERFAMILY | 21 | 88 | 68 | 5.36E-13 | ||
| Gene3D | 25 | 92 | 68 | 2.1E-15 | ||
| ProSiteProfiles | 25 | 64 | 40 | 14.521 | ||
| Pfam | 25 | 64 | 40 | 7.9E-14 | ||
| Coils | 104 | 135 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0159200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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