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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0164700 |
Transcript ID | LotjaGi5g1v0164700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phenazine biosynthesis PhzC/PhzF family protein; TAIR: AT4G02860.1 Phenazine biosynthesis PhzC/PhzF protein; Swiss-Prot: sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283; TrEMBL-Plants: tr|I3SI57|I3SI57_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0164700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42106040..42109525) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAGTTTAACAAATTAAATAGATTGACACAAATTTCTCTTCCATTTCAATTCATTCTTCTTATCTCTATTTTCTCTTG CATCACCCTAACCAAACATTTTTTTTTCTTCACATTGTGTGTTTACATAAATTAGGTGTGAAGTGTGAACATAAAACAAG TGTTAGTTTATTGAATGCCTTGTGTAAAATGTCCTACCAATCTACCATTATTTTAACATCTAAAGAGTGGATAAATCAGA TCTCAAAAGGAACATGTTGGTGGCGGCTGTGTGGAGCTTTGAGCCTTTGACCAGTTTGATCACTTCTTCCTGTTCGTATC TCAATGGCAAGCAAACCTGTCAAATACTATGTGGTATGTATGTTCTTCGTTTATCTGAACTGCTGTGTTGTTTGTTGTTT CTGTGAACTGAATCTGAGTTTGGTATGCAGGTGGATGCGTTCACTGAGTCAGCGTTCAAGGGTAACCCTGCAGCAGTGTG TTTGTTAGAAGAAGACAAGGATGATGATTGGTTGCAAGCTGTAGCTGCAGAGTTCAACATCTCTGAAACTTGTTTCTTGA CTCGCATTGATGGAACCTCTAATCCCCGTTTTGGCCTCAGATGGTTTACTCCTGTTGTTGAGGTATAATCTATAATAGCA TAAATCTCGCACACCATGTGGTTGATTTAAGTTGTACATGTCTGATTTTTCTTAACTAAGGTATAGGCTTGGAATCTTGT TTGTATATGAAAAAAAATCCATGATAAGAGAGTTAGCCTCGTCCTAACATGAATGTTTTCGGCTCGAACACAATTGAATC CTGTGATTAGACCAAGAAAGCATAAACCACACACACATTTGCTTGTACAGTTGTACTCATTATAAATATGCAGATTATAA TCGAACGTTTTATGCTTAATAGCAATTTTGGTCCCTTTAGCTTTGGAGTGCATGAGTTTGGTACATTTAGTTTCAATTGC TCCAATTAGATCTCTTTACTAATTACTATTAAGATCAAACATATTTAGTCAAGATATTAACTTGTCATCCAATAATGAAT GAAAAACTGACATAAATCACAATTTTTATGTGGAAGGTAATTTAGATTGTCTTAACATGTCATACTTGCTAAAATTTCTG ATTCGCTTAAACTTTATAGGTTAACTATTACATAACAAGTTAATGTTGGGACCTTATTCGTTAAATCTAGAAAGTAGAGC GACTTATGTAGAGCAATTGAAAGTAAAACTATGGGAGGAAAAGTGTAACTAAGCCAATGTTTTATTGACATCCTCTTGCA GGTTAACCTCTGTGGCCATGCCACATTAGCGGCTGCATACATACTGTTTTCATCTGGTTTGGTGAAGACCAATGTTATTG AATTTGTGACACTATCTGGAATATTAACAGTCAAAAAGATCCCAGCAGTCAATGCCACTAATGGCACAAACTTGCAAAAG AGTGAAGCTAAGGATGGGTTCTATATCGAATTGGATTTTCCTGCAGACCATATTATAGAGTCCAATTTTGATGGGACTGC ACGAATTTCTGGGGCATTGAATGGTGCTCCCATAATTGATATAAAGAGTACACATAATAGCGAGGACTTCCTGGTAATTC CTAAATATGCTCTCTTCCACTTCTGGTACTTAGAATTCACATGAATTATGCTTAACTATTTCCCAGAAAACAACACATCC TTATGATGCTGTGTCTGGTGAAACCATGTTTTCATAACTTCTACTTTTGGACGCATAATTATATATCTGTTAAGCTGCAT AATTATTGGAGAGGACTAGTATATATCTCATGCTACATAGCCCCATGATTTTAAATTTTAAATTATGGTGTGGTTGCGAT TGCAGTTACATCGCTTTCTTTCTAATTGAAGGAAATTGTGAATAAATGTGGACTGTGGTTGGTAAGGCTGCGATTGCGGT CGCAATGCAGTTGCGTGAACTAGAAAATCCTTGACATTGCAGACCACCACAATTTAGGACCATGCTTAGTGCTTACTCCT ACCTGTAAAATAGCATGAATGTTTTTTGAGCAATTTGTGCTTATGGAAATGGAGCAACATGAAGTTCTTAATTTCTCCTA GGTTGAACTCGCATCAAGAGAAGATGTCATAGCAGTTCAGCCACAACTTGATGCAATGGTTAAATTTCCTGGAAGGGGGG TAATTGTCTCAGCGATTGCTCCTCCAGAGTCGGGATTTGACTTCTATAGTCGATTCTTCTGCCCAAAATTTGGAGTCGAT GAGGTAAATGTCTGTGAAGTCAGAACTATGACTGCAATGTTCTTACTTTTACTGTAAAATGTCTCCTCAATTATGCAATA AATGAATTCTTAATGTCCAAGTAAGATATGGTTTCGATTTTGGGCTCAGCAATATAGATGCAATTTGTGAACTTTATAAT CCCTTAAAATTGGTCGTTCTCTTCTTACAACAAGCACTTCACGATTTTAGAATTATTAGAAAATAAAACTTTTGAATCAA GCCACATAATATTATTTTTACTACATATTTTCACAAGGTCCATTGTAGGATCATTTAAAAGAATGGAAAGGCTTCCATCG TAAGCAATTCCACTCTTCTCCAATATATGAAAAGTTTCAAAGCGTCTGTGTGCGCTCGAATATGCTGAACCTGGGATTAC ACAACTCATATTGTTGAAATGCACTCCAACAATGATAACAGAACTAATGAGGCAATGTTACATCACTCGCATTCTTTTCA GGATCCTGTTTGTGGGACTGCACATTGTGCCTTAGCATCCTACTGGAGTAAGAAGCTAGGGAAGTGTGATTTCATTGCTA ATCAGGTACTCTCCTTCCCCCAATTAATGGGAGTATCTTTGTCAATGTCTTACTAACCTGAAGAGTATTTATGCAGGCAT CACCCAGAGGGGGAATTCTCCATATTCATCTTGATGAGGAGAACCAACGAGTGTTCTTGCGTGGGAAGGCTGTTACGGTG ATGGAAGGGTGTGTTCTGGTCTAGGCCTGTTCCTAAAATTGCAGAATACATAGTTGCTCCAATAGATATATCAGATGATA AGAATTGTAATTGGAGAACTGAACTCTTGCAAAAGAAGAACCTCACTGCATTCTGTATTTGATACACAAAAACCTTGGTG GCAATGTAATAATATTTGTTGAGTTGAATAAATTGATCTGGTCATTGCCTTTTTAGCAGGCATCCCCTTTAGGAGTTGTT TTTTTTTTGGTAAGCAAGGAGGAGTTGTTATTAACAACTCTTTATTCAACGTACTGAGCAGAGCAAAAGAACATTGATGC TTGGAAAGTATGTTATTGTATGGATGGGTGTGCTCTATTTGAACTTCAGTTTAACATTTAAAAGTATAATAATAGACCCA AATGTCAAAACTCTGGGAGGATCTTCTTATGTTTACCTTGCTGATCCTCCATCTCCAATCATTGAAGAGCAAGTCCAAGG TTTCTTTTAGCTGAAATGTGCCTAGCTAGAACCAGAGTCGATGAGC
CDS sequence (LotjaGi5g1v0164700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGCAAACCTGTCAAATACTATGTGGTGGATGCGTTCACTGAGTCAGCGTTCAAGGGTAACCCTGCAGCAGTGTG TTTGTTAGAAGAAGACAAGGATGATGATTGGTTGCAAGCTGTAGCTGCAGAGTTCAACATCTCTGAAACTTGTTTCTTGA CTCGCATTGATGGAACCTCTAATCCCCGTTTTGGCCTCAGATGGTTTACTCCTGTTGTTGAGGTTAACCTCTGTGGCCAT GCCACATTAGCGGCTGCATACATACTGTTTTCATCTGGTTTGGTGAAGACCAATGTTATTGAATTTGTGACACTATCTGG AATATTAACAGTCAAAAAGATCCCAGCAGTCAATGCCACTAATGGCACAAACTTGCAAAAGAGTGAAGCTAAGGATGGGT TCTATATCGAATTGGATTTTCCTGCAGACCATATTATAGAGTCCAATTTTGATGGGACTGCACGAATTTCTGGGGCATTG AATGGTGCTCCCATAATTGATATAAAGAGTACACATAATAGCGAGGACTTCCTGGTTGAACTCGCATCAAGAGAAGATGT CATAGCAGTTCAGCCACAACTTGATGCAATGGTTAAATTTCCTGGAAGGGGGGTAATTGTCTCAGCGATTGCTCCTCCAG AGTCGGGATTTGACTTCTATAGTCGATTCTTCTGCCCAAAATTTGGAGTCGATGAGGATCCTGTTTGTGGGACTGCACAT TGTGCCTTAGCATCCTACTGGAGTAAGAAGCTAGGGAAGTGTGATTTCATTGCTAATCAGGCATCACCCAGAGGGGGAAT TCTCCATATTCATCTTGATGAGGAGAACCAACGAGTGTTCTTGCGTGGGAAGGCTGTTACGGTGATGGAAGGGTGTGTTC TGGTCTAG
Protein sequence (LotjaGi5g1v0164700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKPVKYYVVDAFTESAFKGNPAAVCLLEEDKDDDWLQAVAAEFNISETCFLTRIDGTSNPRFGLRWFTPVVEVNLCGH ATLAAAYILFSSGLVKTNVIEFVTLSGILTVKKIPAVNATNGTNLQKSEAKDGFYIELDFPADHIIESNFDGTARISGAL NGAPIIDIKSTHNSEDFLVELASREDVIAVQPQLDAMVKFPGRGVIVSAIAPPESGFDFYSRFFCPKFGVDEDPVCGTAH CALASYWSKKLGKCDFIANQASPRGGILHIHLDEENQRVFLRGKAVTVMEGCVLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 295 | 295 | 5.9E-126 | – | |
PANTHER | 1 | 295 | 295 | 5.9E-126 | ||
PIRSF | 4 | 295 | 292 | 3.7E-48 | ||
SUPERFAMILY | 6 | 294 | 289 | 9.55E-73 | – | |
TIGRFAM | 6 | 292 | 287 | 4.1E-37 | ||
Gene3D | 9 | 291 | 283 | 1.0E-90 | – | |
Pfam | 11 | 291 | 281 | 5.8E-89 | ||
Gene3D | 142 | 283 | 142 | 1.0E-90 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. |
Expression pattern of LotjaGi5g1v0164700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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