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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0165100 |
| Transcript ID | LotjaGi5g1v0165100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenazine biosynthesis PhzC/PhzF family protein; TAIR: AT1G03210.1 Phenazine biosynthesis PhzC/PhzF protein; Swiss-Prot: sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283; TrEMBL-Plants: tr|G7IEF2|G7IEF2_MEDTR Phenazine biosynthesis PhzC/PhzF family protein; Found in the gene: LotjaGi5g1v0165100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42184357..42187470) extracted from Lotus japonicus Gifu genome v1.2.
AAAACTTTAAACAAAAATAGAAGTTGGCGTCAATGGCCCAGTGAGTAGTCAGTTCTACACGTGATCACATGTCGGTCACA ACATAGGTATCTAGTGTTAGATTCAGGGTTGAGGGAGTTTTAGCACTTCTTCTTCCTGTTCTTAACTCAATGGCAAAGAA ACCACTGAAATACTATGTGGTAGACGCGTTCACTGATTCAGCATTCAAAGGGAACCCTGCAGCAGTGTGCTTGTTAGAAG AAGACAAGGACGATGCGTGGTTGCAAGCTTTAGCTGCAGAGTTCAACATCACTGCCACTTGTTACTTGACTCGCATTCAT TACTCGCTCAATGGAGCTTCTATTAATCCATGTTTTCGTCTCAGATGGTTTTCTCCACTTACTGAGGTACTATTGTTATT TGTATGTAATATGTATTATGGGAAATACTCTTTTTTCAATACTCACTTGGTCACTGATATTGATTGAAATTTATGTGAGT TCTACTAAATTGCATGTGAGGCCTATCCATTCTACATTTCAATCAATCAATGAAAAAGTGCTCTGGAGAGCGAGTATTAG AGCAAGTATTGCTAACATTTTTCATGTATTATTAGCGCAAAGCATCCACATTTTGATTTTGTTTTGCTTTAAACCACATA TATCCTCGACGTCTTTGAAACGGGTTAGAGCGCTATGAGTAGCAGTCGGCAGAACTCACTCTACCATGTATTTAAAGTCG CTGCTGCATTCACGAAGACTCAAATATGAGACATCAGCGTAAATTAGAAGACAAAGAGTGCACACATTAAATGCACTGTC ACTGTTTGTTTAAACCATTAACATTATCCATCTGGACCTTTAAATTGTGCAGGCTAAACTTTGTGGCCATGCCACATTAG CGGCTGCACACGCACTCTTTTCATCTGGTTTGGTGGATACAAGTAATATTGAATTTGTGACCCTGTCTGGGCTATTAACT GCAAAAAAGATCTCAAACTTGGAAAAGGGTGAAGCTCATATTGAATTGGATTTTCCTGCTGACCCTATTGAAGAATTAAA CTTTGATGGGACTGAACAAATTTCAGTGGCACTCAAGGGTGCTTCTATTGTTGATATAAAGAGGACACATAATGTGGATG ACTTACTTGTAATTCTTAAACTAAATCTACTCTTTTTCATACCTATTATCTAAAATACACATGAATTTCTGCTTAATCTT TATTTATCCTAGGTTGAAGTCACATCAGCAAACAATATAATCGAAGTAGAGCCACAATATGATGAAATAGTTAAATGTCC TGGAAGAGGGATAATTGTTTCAGGAATTGCTCCTCCAAAGTCAGGATTTGACTTCTACACTCGATTCTTCGTCCCAAAAT ATGGAGTCAATGAGGTAAGTGGCTGAGAACTATGACTATTAAGGTTTCTCCAATTGCATTGGCAATGTGTCCTTAATTAT GCAAAACTTTGATTTTGAACATAAAACATAGATGCCATTTTTTAACTGCATAATCCCATGGAATGCTAGTTTCATTCTTT CCTTGAAGCCTGTGTGGTTTATGAGTAATGCACAATGAAAACAGAATTAATGAGATGATGTTCTATTCAGGATCCTGTTT GTGGGAGTGCACATTGTGCCTTGGCATCCTACTGGAGCAAGAAGCTGGGGAAGTGTGATTTTAAAGCTTATCAGGTACTC TATTTTCCACTTATTGTGATTACCTTTGTCATTGTCTCACTAACCTATAGATTCTATTTGTGCAGGCATCGCCCAGAGGG GGAATTCTCAATATTCATCTTGATGAGGAGAACCAAAGAGTGTTCTTGCGTGGTACGGCAGTTACGGTGATGGAAGGGTG TGTCCTGGTCTAGGCCGATTCCTAAAATTACAAGATATATAGTTTCTCCAACATCTGATGATAAGAATTGTAGTTTGAGT ACTGAGATGTTATTACTTAATCACATTAAAAAAGAAAAACCTCTCAGCATTCTGTATTTGATGCACACAAACTATAGGAG TTCTAACTTAAGATTGAATCAATCCTGGGTGTGCAGTGTAATAATATTTGTTAAGTTGAATAAATTGGTCTAGTCATTGG TTTTTTTAGCAGGCATTCTCTTGAGGAGTTGTTATTGATGCTTGGAATGGATGTTATTGTCATTGTTATTGGACTAGTCA TGTGATCTATTTGAACTTCTGTGTAACATTAATGCAAAGTCCCAAATGCCATGATATCAGGTTAACAAATCACCTGAAAT TGGATTTCCATACCTTCTTTTTTGGTGCAACAAAGGGCTGCAAGCTACAAACAAAGAAAACTAACTCAAAGCTCTTCCAT GGAACTAGGCTCTAGAGGAGTCAGCTACCAGTGCTAGGCAAACAAAACCCAGGACAACATCAGAAACTTTGAACTCAACT AGCATCATTAACAAACCAAACCAAATTTAGCCAAGAAGTTATCAATTCCATTACTCCTTTGCTTCTATGAAATTCAGATT CCACATCGATTCTGTAGATATTTTGCTCAACTGAATGAACAATCAACCGTTTACTACTTTATATAGCCTAATCTTTCAAA TCTGATGTGAGACAGTAGGACTTGATGTGAGATCCTTTGAGGCATAAAGCATGACCAGTGGTTGCTTTCAAGTATCGAAA GGCATGATAAAGAGCATGCATATATGAATATGAAAATCAGTGGGAGCTTGCAGGAGGTACTGAGATACTTTCTTTACAGA AAATGCCACACTAGGATGAATAGTGGATTAGTACTGAAGAGAACCTACCAGCTAGAGGTAAAGCTTGGCATGACATGTGT ATGGTTGTCTTTCTAATGACTTTACTCATTTTACAATTAGAACATTACTAATTTTTAAAATTGCGGTATAAGGTTCCATA TTGAAATAAATAAAAATAACACAAAAGGAGGATTGAATTGTGTTTATCAAATTCTCTTCTAATTTTAAGAATTAATGAAA CTTTGTTTATCAAAAACTTAGCAAACAAATGTTGATAGAAAGAATATGCTGAAAGTAGATTCTGAAGTATAACACATGTT GACAAGGTGTAGAGTGCAAGCGGAGAAAGGTTCTTAAGCCTAGAGTGATATTTTTATAACTTGGTTCAATTCCC
CDS sequence (LotjaGi5g1v0165100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGAAACCACTGAAATACTATGTGGTAGACGCGTTCACTGATTCAGCATTCAAAGGGAACCCTGCAGCAGTGTG CTTGTTAGAAGAAGACAAGGACGATGCGTGGTTGCAAGCTTTAGCTGCAGAGTTCAACATCACTGCCACTTGTTACTTGA CTCGCATTCATTACTCGCTCAATGGAGCTTCTATTAATCCATGTTTTCGTCTCAGATGGTTTTCTCCACTTACTGAGGCT AAACTTTGTGGCCATGCCACATTAGCGGCTGCACACGCACTCTTTTCATCTGGTTTGGTGGATACAAGTAATATTGAATT TGTGACCCTGTCTGGGCTATTAACTGCAAAAAAGATCTCAAACTTGGAAAAGGGTGAAGCTCATATTGAATTGGATTTTC CTGCTGACCCTATTGAAGAATTAAACTTTGATGGGACTGAACAAATTTCAGTGGCACTCAAGGGTGCTTCTATTGTTGAT ATAAAGAGGACACATAATGTGGATGACTTACTTGTTGAAGTCACATCAGCAAACAATATAATCGAAGTAGAGCCACAATA TGATGAAATAGTTAAATGTCCTGGAAGAGGGATAATTGTTTCAGGAATTGCTCCTCCAAAGTCAGGATTTGACTTCTACA CTCGATTCTTCGTCCCAAAATATGGAGTCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGCCTTGGCATCCTACTGG AGCAAGAAGCTGGGGAAGTGTGATTTTAAAGCTTATCAGGCATCGCCCAGAGGGGGAATTCTCAATATTCATCTTGATGA GGAGAACCAAAGAGTGTTCTTGCGTGGTACGGCAGTTACGGTGATGGAAGGGTGTGTCCTGGTCTAG
Protein sequence (LotjaGi5g1v0165100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKPLKYYVVDAFTDSAFKGNPAAVCLLEEDKDDAWLQALAAEFNITATCYLTRIHYSLNGASINPCFRLRWFSPLTEA KLCGHATLAAAHALFSSGLVDTSNIEFVTLSGLLTAKKISNLEKGEAHIELDFPADPIEELNFDGTEQISVALKGASIVD IKRTHNVDDLLVEVTSANNIIEVEPQYDEIVKCPGRGIIVSGIAPPKSGFDFYTRFFVPKYGVNEDPVCGSAHCALASYW SKKLGKCDFKAYQASPRGGILNIHLDEENQRVFLRGTAVTVMEGCVLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 288 | 288 | 1.1E-120 | ||
| PIRSF | 4 | 288 | 285 | 1.1E-41 | ||
| SUPERFAMILY | 6 | 287 | 282 | 1.02E-67 | – | |
| TIGRFAM | 7 | 285 | 279 | 2.9E-29 | ||
| Gene3D | 9 | 284 | 276 | 3.5E-86 | – | |
| Pfam | 11 | 284 | 274 | 1.5E-82 | ||
| Gene3D | 135 | 276 | 142 | 3.5E-86 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. |
Expression pattern of LotjaGi5g1v0165100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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