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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0167700 |
| Transcript ID | LotjaGi5g1v0167700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT4G02740.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q0WRC9|SKI17_ARATH F-box protein SKIP17; TrEMBL-Plants: tr|A0A151RLJ8|A0A151RLJ8_CAJCA F-box protein SKIP17; Found in the gene: LotjaGi5g1v0167700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42790500..42794078) extracted from Lotus japonicus Gifu genome v1.2.
GCTCTTGATACTCAGAGCCTGTGCTATGCGTCTGCTACTTGTACATTGTTTAATAAATGTGCTAAGGATCCTTTGTGCTA TGAGAATCTTGATTTGACCACACTTGTTCCCAAGGTTAACAATTCAGTGGTTTCAACAATGATTCAGCGAGCTGGAAAGG CACTGAGGTAAACTTCTATTAACTGGTAACTGGTTATATAGTGGTATAATTTATGAACTGGTAATCTGGTCTGGTGGGGA TCATTTGTCTATTGCAGAACTTCATCTTTGGCCAGTAAATGCAAAAAATGGGGGGCCAGTGGGGTATGTTTGATGGCATA TTGATTATTTGTTTTGATATCTGCGTTTTATGCATTGCTCCACATTTTTTCGGTCCCTGAGAGAAACTTTTGTATTTTAA TTTGTTTGTTAGCTCTATCAGCTACGGGTAGAGAAGAAAGTGAAAAACTTCATCCATTTTAACCTATACCAACTTGCGTG TGCATTACATTCTTATGTATTTTTCCTCATTATCTTCTTATGTTCATTTTATTAATTTGTGGATCAGGTCTCTTAAGCTT GGTGTGATCCCTGGTGCTACTCCTTCACCTGGGTGTTGTCAACCATTGGTTTGTCCCATCAGAAATGCCATTGTAGACGT ATCCAACTTCTCATGGACTGATAAGAGATCTCGACAGGGGAGAGAATCTTCTATTCTTACAAGATCCTGTTTAAGCCCCT TAAGTAGGGATGTTGGTGCAGCTGCTCCAGGGTATGTTGTTCATTCACCCTAGAATTCAGTACTTTGGGTTACTTGTTTT AAATGAGCTATTTTATTTTCATTTACAGGGCTCTTTTGAGAAGGCTGAAATTGTACAATATTGAAAGGATGGATAATGTA TCACTTAGTGGGGCATTATCAGCATGCCCTTCTCTTCTTGACTTGGAAATTGTCGGGCTGTAAGTTAGTTTCCGTCTGCT TTATTTCTCTCGCTTCATTTCCTTATTTCTCTCGCTTCATTTCCTTATAAAACTACAAATCTTGACCTTTCCTTGAGTTA TGACGAGTATACTGATGGTACATACTTTTAATAAAAATGTGATTTTTGCTGATTCTAGTTGCATTTGTGATACTTAGTTA TCCGGTTAAGTTCTTAATTCGTCACAGTAGCAGTTTCATTTTGAAATTCATTCCACTAATTTATTTCTTATGAGAAGTTT GTTTCCAAAGGATTATTTTTTCATTGGACGTGATTTTTTCTTTGTTTTAAATGCTAGTCATGTTGAATTGAGGCTAACGT TGATGTCAGTAAGCGCGCACTGCCACTTGATTGAGCGTTTGTTTTTTGAGTCTTCCAAAACAGGTAAGTTATTTTCTCAC TATGTTTTGTCATATATATAAACTCTCTTTATTTCCCTGCTTATCTGCTTTTAATTATCAGGTAGAGACGACAGTTTGAA AACGCAAACCTGTGTTGAGCTAGTGGATAATTGTCCTCATCTAACTTCTCTGTCCCTTAGAGGTTTTAAGCTACATGATT ATAAAGTTCGTGTACTGGTTAAGGTATGTTCTCAGGAAATTCTCAACTATTGCAATGACTCTTGTTAACTCTGGGCTAAT TTTCTTACGTTAAAATTATTCATTAAGAAGTTGTTTCCCTATATATATAGTGTTTAATTTCAGCATTGTTCTTAGTAATT TGTTTAAGGCATATGGGAAAGGGGGGAAGAGTTGAGAATGTTAGAAAGCCTCGAGTCCGAGATGGCTGCATTAGTTCAGG TTAAAGGAAGCTGGTGAACTTTGCAAATTGCAGCTTACAAGTCTTCATTAAGTGTGACAGTCAGTCTAAAGGGCTTTATA AATAGGGTTAACAACTGTTCTATTTTGAGCATGGGCTTTTCTTACCCAAGCGGGGTCTTATTTTCACCATTGACTATTTT CCTTGGTTAACAGTAATTGTAGTTTTGCCAATTGCTGGGGGTTCTTCCAAAATTTTAGGTTAACTATTTATGTATGCTTT ATCAATCTCGTTCCAACAATGAACGACCTATATGTTTTGTCCTAATTTCTAATTAGATGATCCACTAATTCAACTGATGC TGAATTAGTTATTTCTTGTGGTAGCTGGTAAGTGAATTTAGTTTATCTAAGTAATAGTTCTCCAATGATACATATCCCTG TGCATTGAAATGACTGTTTTGAGTAAGTGAGCAAAGTGTTATTTTCTTGGTTTTCATTATCCTAGTTCTCACTTTTGCAT AAAAGAAATAGAGGGTTATTAATTTCAATTTGTTCATGCAGGGATTTCGTAAACTGAAATATGTTGATTTTTCTACATCC TATTCAATCACCGGAAGCTTCTTAAGGTTTGTTATTTTTAAAAACATTTTACAAGAACTCTTCACATTATCTACCTGTTA GAATGATTTCTTTGTATCTGTTTTTTTCAGTCCAATTATCTCACAATATTAAAACCTTCATTTTCAGAAACCTTGGAAGC TACAATGGTGGGAATTCTCTTGAGGCTTTAATTTTAAGGGATTGCATGCATTTGAAAGAGGTTTTACTTCTAATGTATTT GTATTTCATTTTGTTTTTCTAATATATTGCTTCTGAAATGTTTATACTTTCATCTGCAGGTGGAAGTTGCCAGGTTGCTG ACAGCAATTCTTGCAGGCGATTTCAAATCGCTCCTACATCTTGTGGGTGCATCAAAATATGTTACATAGTAAAACAGCTT AAATGTGTTTTTGATTTCTAAATTTTATGACTTTTATAAATCATACCTATCGGAGTTTTATTTGATTTATTCCCTATATT TATAAAAAATTCTGTGTTTGTAATTCAGCGTGTGTTTTTGTTCCTTGTTGAGGACTAGAAATGAACATTTTTGTTAGATA TTGGGATTGAAAAATGAATAATATTCAAATAGGGACTAATGTAAAAAAACGTTATATTTTCTGAAACCATCAACATATTT AAGCCTATAAATGTTCCTGCTCGACTTTCTTTTAATTTTGCTTCTAGTTCTTATTGTTTCCTTTATCAGGATATTTCCAA TCGGGAAGGCTTAGCATCTGAGGGTGATTGGTACCATAGGTGCTACAACTCTAGGTAGTGAATCATTTCTAGATTAGATA ATTTAGTCTCAAATTTCTGAATGACTGATGTTTTGAATGGGGTTTCTCTATGGGGTGCAGTATCATGCCTGTAAAGCAGG TTTTAGAAGCAAGGCCTGATATGTGTCTGGTAGCTGAATATCCTCAAGAAGGAAGGTTAGATACTTTTCCAATAGACTAA TTTGGTGCAGTGTCATTCATATTTGCAGATGGAGTTATGTTTTTGTTTCCCTTCTAAAATTTGCCATTTTATGTTCTGGA TTTGGTTGCAGTTACATGGACTCGTTTGACACTGATATGAACAGTGAGATAAGTCTTCCATCACAATTGAGCTTTCATAG TTCAGATGGATTGGTTTTTTTAAGTACATCTGAAAGCAGCTACAATAGTGACCATGGTAGTGGTAATGAGGATGGTCAAG AGGCCAACTATGTAATTTACGAGGAAAGTTCAGACGAGATAGACTTCTTGTCCCTGTAG
CDS sequence (LotjaGi5g1v0167700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGCGAGCTGGAAAGGCACTGAGGTCTCTTAAGCTTGGTGTGATCCCTGGTGCTACTCCTTCACCTGGGTGTTG TCAACCATTGGTTTGTCCCATCAGAAATGCCATTGTAGACGTATCCAACTTCTCATGGACTGATAAGAGATCTCGACAGG GGAGAGAATCTTCTATTCTTACAAGATCCTGTTTAAGCCCCTTAAGTAGGGATGTTGGTGCAGCTGCTCCAGGGGCTCTT TTGAGAAGGCTGAAATTGTACAATATTGAAAGGATGGATAATGTATCACTTAGTGGGGCATTATCAGCATGCCCTTCTCT TCTTGACTTGGAAATTGTCGGGCTTCATGTTGAATTGAGGCTAACGTTGATGTCAGTAAGCGCGCACTGCCACTTGATTG AGCGTTTGTTTTTTGAGTCTTCCAAAACAGGTAGAGACGACAGTTTGAAAACGCAAACCTGTGTTGAGCTAGTGGATAAT TGTCCTCATCTAACTTCTCTGTCCCTTAGAGGTTTTAAGCTACATGATTATAAAGTTCGTGTACTGGTTAAGGGATTTCG TAAACTGAAATATGTTGATTTTTCTACATCCTATTCAATCACCGGAAGCTTCTTAAGAAACCTTGGAAGCTACAATGGTG GGAATTCTCTTGAGGCTTTAATTTTAAGGGATTGCATGCATTTGAAAGAGGTGGAAGTTGCCAGGTTGCTGACAGCAATT CTTGCAGGCGATTTCAAATCGCTCCTACATCTTGATATTTCCAATCGGGAAGGCTTAGCATCTGAGGGTGATTGGTACCA TAGGTGCTACAACTCTAGTATCATGCCTGTAAAGCAGGTTTTAGAAGCAAGGCCTGATATGTGTCTGGTAGCTGAATATC CTCAAGAAGGAAGTTACATGGACTCGTTTGACACTGATATGAACAGTGAGATAAGTCTTCCATCACAATTGAGCTTTCAT AGTTCAGATGGATTGGTTTTTTTAAGTACATCTGAAAGCAGCTACAATAGTGACCATGGTAGTGGTAATGAGGATGGTCA AGAGGCCAACTATGTAATTTACGAGGAAAGTTCAGACGAGATAGACTTCTTGTCCCTGTAG
Protein sequence (LotjaGi5g1v0167700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQRAGKALRSLKLGVIPGATPSPGCCQPLVCPIRNAIVDVSNFSWTDKRSRQGRESSILTRSCLSPLSRDVGAAAPGAL LRRLKLYNIERMDNVSLSGALSACPSLLDLEIVGLHVELRLTLMSVSAHCHLIERLFFESSKTGRDDSLKTQTCVELVDN CPHLTSLSLRGFKLHDYKVRVLVKGFRKLKYVDFSTSYSITGSFLRNLGSYNGGNSLEALILRDCMHLKEVEVARLLTAI LAGDFKSLLHLDISNREGLASEGDWYHRCYNSSIMPVKQVLEARPDMCLVAEYPQEGSYMDSFDTDMNSEISLPSQLSFH SSDGLVFLSTSESSYNSDHGSGNEDGQEANYVIYEESSDEIDFLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 363 | 363 | 8.4E-182 | – | |
| PANTHER | 1 | 363 | 363 | 8.4E-182 | – | |
| Gene3D | 34 | 269 | 236 | 6.9E-14 | ||
| SUPERFAMILY | 76 | 256 | 181 | 2.35E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0167700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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