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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0168500 |
| Transcript ID | LotjaGi5g1v0168500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock protein; TAIR: AT4G14830.1 17.6 kDa class II heat shock protein; Swiss-Prot: sp|Q84J50|HS177_ORYSJ 17.7 kDa class I heat shock protein; TrEMBL-Plants: tr|A0A072VLB5|A0A072VLB5_MEDTR Heat shock 22 kDa protein, putative; Found in the gene: LotjaGi5g1v0168500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:43144952..43146641) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGCAAAAAATTTCTATACACACTGTTCAAGAATTAATTAAACAGTAAACTAAATACATAAATAGCTCAACTATTTAC TAATTATATTATGCTAGATGTTGTCAGGTTATTTTATTCCTAAAGACAAAGAAAGCAAAAGCAATCAATCAATGCCCTCC TCCATAAACCATCTCTTTCCATGGCTAGTTTTGTCCAACCAAATTTCCATGAGCTACCTCTATATATTCATAGCCATCAA CTAACATATCCCTCTAATAAACCCGAATTTCAGATTTCCCTCTCCAAACATAAAAACACTCATCTGCAAAATAACCAAAT TTAAACAGGGTATCCAAACAAGGACTTAGCAAACGTGATTAGTTAGTATTTACCTGCAACACACAGTCACACACCATGTT TGCAGAGAAGGTTATTAACCCCTTCGCAAAGAAGCGCTCTCAACACGCCGTTGTTTCATCCGCAGTGGTACCAAACACGA GCTCGAAGAAGCTATGGAGACTTCCACACGTGTTCGCGAGAACGCTGGAGCTACCTTTTCCTTCAGACGCCGACGTTTCG ATCGACGAAACGAAGCAGTTTTTCCGCTTTGTGGCCTCGTGTGGCGGCGGCAAGACCAGCAGCATGTTCGACGGCGTGAG AGCTCACGCCGTCGAGATTCTCCCGGGGATAACAAAGATCGTGATTAGGAGACTGGATGGCGGCGATGTCGCGGTTACAG GGCATCAGCGTCAGCAGCCTCGTTTCGGCGCTGATCTCTGGCGGTACCGGCTTCCGCCGTGGACGCAGCCGGAGAAGGTC ACCGCTGTTTGCACAGGCGGGAAGCTGGTGGTTACGGTACCCAAGAGCAGAGGGAACTGATTCTGTTTATATGAGAGGCA TGTACTTTGCTGTATTTAACTACTCAGTAAAAAGAGTTCTGCCGTCCAGAATGATCTTACTCCTCGAAATTACGAGAGCA ATTTAACAGTGATTAGGTACATGTTAAGATGCTATGTGACCACGCTCTTTTATCATAATAGTTTTCTCTAATAAAACAAA GATTCCATGCCATTTGGCCTGTTCTTTTGGCTCTGGCCTTGGCTTGTGAATCAATTCGAAATTTGAAGGTTATTTGATCA TCTATTTACTCAATTTTCTTAGGTTATAATTTATATCATGGAATTAACAAAGTATAATTACTTTTTCTCCCTTTTCTTTT GATGAATGTGATGCTGCGGCTAGCTAGGCCTGTGATCATGGCCTTTGCTCAATTTTCACTTTGTACTCTGGAGTTTTCAT GTGGAGGTCAAATTGGGATACTGTTCTTTGTGAATGATGAGACGATTTTTTGTTTCTTCCTTTTATACCAGAAATGACGA TGGTCTATGTTAGCAGTAGCTAGTATTGTCCATTGATAATAGACAGTAAGGAAAGTATGCAAGTTGGTCAGTTTAATCGA AGTAGACAATAGCCACATGCTTAAGAAGATCAAATGAGTACTATATGCAGAAATAGCATTGAAAATGTAGGTTCAATTTT CAATTTAATGTGACTCGCATGAATTTTAAGTAATAAATGAAAGAGTATTGAAAAGTGAATGTTGCTAGCATTCTTCAACA TTATAATATTGAATGTTGCCAACCAAAATTTTGAAGATTTGGATATTTTAGCAGGAACATGATTTCCCTTATTAAGGATG GACTTACAAT
CDS sequence (LotjaGi5g1v0168500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGCAGAGAAGGTTATTAACCCCTTCGCAAAGAAGCGCTCTCAACACGCCGTTGTTTCATCCGCAGTGGTACCAAA CACGAGCTCGAAGAAGCTATGGAGACTTCCACACGTGTTCGCGAGAACGCTGGAGCTACCTTTTCCTTCAGACGCCGACG TTTCGATCGACGAAACGAAGCAGTTTTTCCGCTTTGTGGCCTCGTGTGGCGGCGGCAAGACCAGCAGCATGTTCGACGGC GTGAGAGCTCACGCCGTCGAGATTCTCCCGGGGATAACAAAGATCGTGATTAGGAGACTGGATGGCGGCGATGTCGCGGT TACAGGGCATCAGCGTCAGCAGCCTCGTTTCGGCGCTGATCTCTGGCGGTACCGGCTTCCGCCGTGGACGCAGCCGGAGA AGGTCACCGCTGTTTGCACAGGCGGGAAGCTGGTGGTTACGGTACCCAAGAGCAGAGGGAACTGA
Protein sequence (LotjaGi5g1v0168500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFAEKVINPFAKKRSQHAVVSSAVVPNTSSKKLWRLPHVFARTLELPFPSDADVSIDETKQFFRFVASCGGGKTSSMFDG VRAHAVEILPGITKIVIRRLDGGDVAVTGHQRQQPRFGADLWRYRLPPWTQPEKVTAVCTGGKLVVTVPKSRGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 154 | 146 | 2.9E-66 | – | |
| PANTHER | 9 | 154 | 146 | 2.9E-66 | – | |
| CDD | 89 | 150 | 62 | 4.29216E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0168500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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