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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0183800 |
| Transcript ID | LotjaGi5g1v0183800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RKP0|A0A151RKP0_CAJCA Putative AC transposase; Found in the gene: LotjaGi5g1v0183800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:46788811..46791915) extracted from Lotus japonicus Gifu genome v1.2.
TTTCACTCCTCACTCCTTACACACGCCAACACCGCCGCACCCTCCACCGCTAACACCGTCGTTTCTGTTCACCGCCGGCA ACAAGGTACATCACCTTTTCTTCTTCCTTCATTTTAGTGCATTCCTTTCATCTTCCATGCTAAAAACTGCACACAATTCG ATGCAATGTAATGGTAGTCATAGTGTTACCCTTTGTTTCAATTTCTTCATTTCCAGAATGTCAAATGACCAAGCAATGCA AGAAAATCAAAATCAACCCGAACCTGAACCCTCGTTGGGTTCGAACTCAGTTAAATGCGAACACAACGAATCTGAAGAAG AAGCTTTCAATATCTGGAACCACTTCACAAGAAAGAGGAAAATCAAAGGACACTGGGAAGTCTATTGTGATTATTGTGGG GAGGAGTACATTGCTGGTGGTGATAATTTTGAGGAAAATCTCCTCTTGCACTTGGGCGACCACACCGAAATCTTCGGCGG CGCAAGGGAAGAAATCGGGTCTGGTGGTCATTTCTTTGATGAAGAGGGTGCGAGGAAGGAACTTGCTCTCATGATTATCT GTCATGGTTACCCGATTTCGATTGTGGATCACGAAGGGTTTAGGCGATTCTCCAACAGCCTTCAGCCGTTGTTCAAGGTA GATCGTCGAATGGTTAAGAAGGAGATTCTCAAGCTCTATAATGAGAAGAAATCTGAGACAATGGAGTTGTTGTCCAATAA TAAAAGCCGGGTTGCAATTACAGCTGATATGTGGAGTTGTAGAGACAAAGATAAACACTACATGGCCATCAAAGCTCATT TTATTGACGATTCTATGACTCGGCAAAGCCGGATGTTGAGGTTTTTTTTCTTTCTAATATCTTGTCTTTCTTCAAGTTTA GACTGAGATTAAGGCTATGTTTGGATTGCTGGTACGAGGTGGGATGAGATGGAATGATTTTATGTTTCGTTGTTTGGTTT TGCTAAATGAAGATGAAATTAAATGCAAGGTGGTGGAACCCATTCCATTACTTACCATCAATTTTCATACCCCTAATTTG GATAGAATGGAGACACTCATAACTAATAAAACTATAAAATTATTTTTCTATCGCTACCTATATTATATATATATTCAATA TTTCATTATGTTCCGTTCCATTATGTTCCATCAATCCATACTTTAACCAATCCCGGTGGGGAAAGAAGCTTGATTGTTGT TTTTGTTTCTCTTTTTCTTTCTTTTTGGTTGTTGATCAATTTGTGCATGTTGTTGAGATTATGTACTTGTTGTATATTGT AGGTTCGTTTATGTGCCTATTCCCCATACAGAAGATGCTCTTTCTGATGTTATAGTACAATGTTTGAAGGATTGGAACCT GGATACAAAGCTATCCACCTTGACTGTTGATAGTTGTGGCACAAGTGATGCTATCTTTGAGTGCGTTATGAATAAGGTTT CGCCTAGATCATTAATTTTGGGTGGTAAACTGTTTCGCATGCGTTGGTGTAATCATATACTAAATCTGATTGTGAAGGAT GGATTGTCTATAATCTCTGACACTGTTGAAAAAGTTAGAGAATGTGTTGAGTTTTGGACAGCGGAGCCAGACAGAGAGGA AACATTCGAAGAAACATGTAATCAACTAAACATTCCATATGGAAAAGATCTTGTCCTTGATTGCGGAACAAGGTGGGTAT CTACATTTTTGATGATCAATGCTGCTATACGATATAAAGAAGTTTTTCATCACTTGACGCAACAACAACCTCAGAATATG CCTTTGCTTAGTGAAGATGAATGGAATATACAACAGAACATGTCTTTGCCTAGTGAAGATGAATGGAATATGGCAAAGGA AATTTGTCAGAAGCTGGAATTGTTTTATGATCTGGCTGAATTATTTTTTGGTACTGTGAGTCCAACTCCAAATGTTTACT TCTTTAAAGTCTGTACAGTAAGATCGGCTTTGAAAGAATGGCTTAGTTGTTCTGATGCCATCATCCAGCAAATGGCTTCG AGCATGATTGCCAAGTTTGACAACTATTGGAGTGGGATCAATGAGGTGATGGCTGTGGGAGCAGTATTAGATCCTAGGTA CAAAATGGTGTTGTTGGAGTTCTTTTTTCCTCGTATATATGGAGAGAATGCATGTCATGAAATTGAAAAGGTGAAAACTG TTTGCCAAGATTTATTTATGGAGTACAAGAACAAGTCTGAGGAAATCGAGACTAGTTCTTCATCTGGAAGCAAAACTGTA ACAAATACAAGTTCTGTTGGAGAAATGTACAAATGGGAGGACCCTATGTTTGTCAAGTATCTTGCCGAAAGAACTGCCTC TGAGAATACAAAGTCAGAACTAGAACAATATTTAGATGCAAAGGTGTGGGCTCGCTCTTTATTTAAAGATATTGACATCT TAACTTGGTGGAAAGCAAATAAGTCTGGATACCCAACCTTGCTGAGCATTGCTAGAGATTTGCTAGCAATTCCTACATCG ACAGTTGTTTCAGAGTTGACTTTTGGTACTAGTGGTCGGTTTCTCACTTCACATCGCAGTGACCTGCACAGAAATTATGT GGAGGCATTGATGTGTACCCAAGATTGGCTAGGTACTGGTACACATGGTCATATAAGTTTAATTCAATTTTATTTATTTA TTTTAATTTTACAATGATGTCATGTTATTTTTTTTCCCTCAGGTTTTTCAGGAATGGACTTCGAGAATGATATAGATATA GACTTTGAGTGATATACAACGCAAGAAGACATAGGATGTAAGTGAACTTTCGTAGATTAATTTACATTAATGTTTATTAA TTACTCAAATAAAAATCTATTTTCACAAAGTAAATATGTTTTTGCAGGAACCAAGAAATATCTGAGCTCCTTCATCAAAT CTGAAAATTTTGTTGGAAAATGGGAATCTGAAGCAGTGTTGATCTAAATTTGGATTTATATTTTAGTTATGCTGTCGTTG GATATTGTGTTTAAATCTACTGAATATTATTTAGTTGTAGACTTCCGTTGTTGCTTGTTTGTTAAGATGTGTGATTTTGA ACAATTATGCCATTGTACAAGGTTGGGTTTAATTTTTGAGTTATCTTATTGAAGTATGATAGAGC
CDS sequence (LotjaGi5g1v0183800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAATGACCAAGCAATGCAAGAAAATCAAAATCAACCCGAACCTGAACCCTCGTTGGGTTCGAACTCAGTTAAATG CGAACACAACGAATCTGAAGAAGAAGCTTTCAATATCTGGAACCACTTCACAAGAAAGAGGAAAATCAAAGGACACTGGG AAGTCTATTGTGATTATTGTGGGGAGGAGTACATTGCTGGTGGTGATAATTTTGAGGAAAATCTCCTCTTGCACTTGGGC GACCACACCGAAATCTTCGGCGGCGCAAGGGAAGAAATCGGGTCTGGTGGTCATTTCTTTGATGAAGAGGGTGCGAGGAA GGAACTTGCTCTCATGATTATCTGTCATGGTTACCCGATTTCGATTGTGGATCACGAAGGGTTTAGGCGATTCTCCAACA GCCTTCAGCCGTTGTTCAAGGTAGATCGTCGAATGGTTAAGAAGGAGATTCTCAAGCTCTATAATGAGAAGAAATCTGAG ACAATGGAGTTGTTGTCCAATAATAAAAGCCGGGTTGCAATTACAGCTGATATGTGGAGTTGTAGAGACAAAGATAAACA CTACATGGCCATCAAAGCTCATTTTATTGACGATTCTATGACTCGGCAAAGCCGGATGTTGAGGTTCGTTTATGTGCCTA TTCCCCATACAGAAGATGCTCTTTCTGATGTTATAGTACAATGTTTGAAGGATTGGAACCTGGATACAAAGCTATCCACC TTGACTGTTGATAGTTGTGGCACAAGTGATGCTATCTTTGAGTGCGTTATGAATAAGGTTTCGCCTAGATCATTAATTTT GGGTGGTAAACTGTTTCGCATGCGTTGGTGTAATCATATACTAAATCTGATTGTGAAGGATGGATTGTCTATAATCTCTG ACACTGTTGAAAAAGTTAGAGAATGTGTTGAGTTTTGGACAGCGGAGCCAGACAGAGAGGAAACATTCGAAGAAACATGT AATCAACTAAACATTCCATATGGAAAAGATCTTGTCCTTGATTGCGGAACAAGGTGGGTATCTACATTTTTGATGATCAA TGCTGCTATACGATATAAAGAAGTTTTTCATCACTTGACGCAACAACAACCTCAGAATATGCCTTTGCTTAGTGAAGATG AATGGAATATACAACAGAACATGTCTTTGCCTAGTGAAGATGAATGGAATATGGCAAAGGAAATTTGTCAGAAGCTGGAA TTGTTTTATGATCTGGCTGAATTATTTTTTGGTACTGTGAGTCCAACTCCAAATGTTTACTTCTTTAAAGTCTGTACAGT AAGATCGGCTTTGAAAGAATGGCTTAGTTGTTCTGATGCCATCATCCAGCAAATGGCTTCGAGCATGATTGCCAAGTTTG ACAACTATTGGAGTGGGATCAATGAGGTGATGGCTGTGGGAGCAGTATTAGATCCTAGGTACAAAATGGTGTTGTTGGAG TTCTTTTTTCCTCGTATATATGGAGAGAATGCATGTCATGAAATTGAAAAGGTGAAAACTGTTTGCCAAGATTTATTTAT GGAGTACAAGAACAAGTCTGAGGAAATCGAGACTAGTTCTTCATCTGGAAGCAAAACTGTAACAAATACAAGTTCTGTTG GAGAAATGTACAAATGGGAGGACCCTATGTTTGTCAAGTATCTTGCCGAAAGAACTGCCTCTGAGAATACAAAGTCAGAA CTAGAACAATATTTAGATGCAAAGGTGTGGGCTCGCTCTTTATTTAAAGATATTGACATCTTAACTTGGTGGAAAGCAAA TAAGTCTGGATACCCAACCTTGCTGAGCATTGCTAGAGATTTGCTAGCAATTCCTACATCGACAGTTGTTTCAGAGTTGA CTTTTGGTACTAGTGGTCGGTTTCTCACTTCACATCGCAGTGACCTGCACAGAAATTATGTGGAGGCATTGATGTGTACC CAAGATTGGCTAGGTTTTTCAGGAATGGACTTCGAGAATGATATAGATATAGACTTTGAGTGA
Protein sequence (LotjaGi5g1v0183800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNDQAMQENQNQPEPEPSLGSNSVKCEHNESEEEAFNIWNHFTRKRKIKGHWEVYCDYCGEEYIAGGDNFEENLLLHLG DHTEIFGGAREEIGSGGHFFDEEGARKELALMIICHGYPISIVDHEGFRRFSNSLQPLFKVDRRMVKKEILKLYNEKKSE TMELLSNNKSRVAITADMWSCRDKDKHYMAIKAHFIDDSMTRQSRMLRFVYVPIPHTEDALSDVIVQCLKDWNLDTKLST LTVDSCGTSDAIFECVMNKVSPRSLILGGKLFRMRWCNHILNLIVKDGLSIISDTVEKVRECVEFWTAEPDREETFEETC NQLNIPYGKDLVLDCGTRWVSTFLMINAAIRYKEVFHHLTQQQPQNMPLLSEDEWNIQQNMSLPSEDEWNMAKEICQKLE LFYDLAELFFGTVSPTPNVYFFKVCTVRSALKEWLSCSDAIIQQMASSMIAKFDNYWSGINEVMAVGAVLDPRYKMVLLE FFFPRIYGENACHEIEKVKTVCQDLFMEYKNKSEEIETSSSSGSKTVTNTSSVGEMYKWEDPMFVKYLAERTASENTKSE LEQYLDAKVWARSLFKDIDILTWWKANKSGYPTLLSIARDLLAIPTSTVVSELTFGTSGRFLTSHRSDLHRNYVEALMCT QDWLGFSGMDFENDIDIDFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 108 | 644 | 537 | 1.4E-164 | – | |
| PANTHER | 108 | 644 | 537 | 1.4E-164 | – | |
| SUPERFAMILY | 163 | 644 | 482 | 2.2E-74 | ||
| Pfam | 413 | 509 | 97 | 3.6E-27 | ||
| Pfam | 560 | 644 | 85 | 3.7E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0183800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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