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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0186800 |
| Transcript ID | LotjaGi5g1v0186800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TPX2 (Targeting protein for Xklp2) family protein; TAIR: AT3G23090.1 TPX2 (targeting protein for Xklp2) protein family; Swiss-Prot: sp|Q84WL6|WDL3_ARATH Protein WVD2-like 3; TrEMBL-Plants: tr|I3T524|I3T524_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0186800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47428814..47433098) extracted from Lotus japonicus Gifu genome v1.2.
GGATGATATGTTCAAATTTAAAAACTTGGGAAAAGTGCAATGCAATAATTTAACAGCGTGAATAAACGGCAGGTGACCGA CGAGTCAGAATATAAAACGCCGCGCGACAACAAAACAAAACTCCAAAACACACAACACAAACTCAGAAACACACGCACAG TGACAATCATTTCTTTCCTTCCAGATCCAACTCTAAACGTGAGTCATTCTTCATTCTTCATTCTTCTCCCCCTTTTCTTA TCAATGCATCAAAATGCACCTTCTTTATTTCTCAGATCTGTCTTGTGTGTTTTTTTTTTTTATCAGCATTTGATTTTTTT TATTACTTAATTTGATGAGTTATGTTCTATTTTTGTTATGTGCCATTGACCCATTGGGATGAATTTTTTTTTTTGTCATG GTGTTCTGTTTGGTTGATGGGAAAAATCTAAAAGTGAAGGTGTTGTTACTTACTGAGAAAATGTGAATTAGGGGGTTGAG GAAGAAGAAGATAAATGTTTTTGTATGTTGAGAACTTGAAATCTATTATTTTCTATTTACTTTTTCTGTTATTAAGTACA GAAATGGTTCAAAGTTTGATTTTTTTTGGTTCTTTGGAAGTTGGAAGCATTTTTGTGTTTACAGCTTTTTGCATGGTTTG GATCCTTGGATAGAAAAATAATCCATCCCTTGGGGATTTAAGCTTTACAATCTTTCATTTTGCATTTGGGATTTAGCTTA ATTTAGATGCTCCTGATGTGTGTGATTTATATGTTGAATTGAATTTATTGGTCTGTAAATAGATTTTCACTGCTTGAGAA AATTCTACCTGTCTGTGTTTCTTCAAACCATTGTGTTCTGTGAGATTATCCACTTGGTTATACCATTTCATGGATGAAGG GCATCTTATTATTATTATTATTATTCCTGCTAAGACTCTTCTTTGTCTCTGGCATATGATGTCTTGTTGGCTAATCATGC AGTTGTTGTTGATTTTCAATTATTAGTCTTAATCATTGATTCCATGCCAACTAATCTGATAGCTTTCCTTTTATGTGTTT TAGGCGTTTAGTTTTTCTTTTGAGTTCCTTGGCTTCTTTTGAGTTAGGTAGACCATTGATATTCTATTCCTTTATGATTT ATGTTAAATAAATCACTTATGCTTCCCTACTTTTGGAATTTGTCTTGAGCTAATTAAATTTATTATATTTAGGCATGCTT GGTGCAAGAGTTTTATATGTGAGTATCAGAATCAGCTGTTTTTATTCTAGTGACAGAAAGATAACAGAACTGGTGTAGTT GGCAAATTTAATGAAAATTTTCACAAGAATCAAAGGCTACTGCAGAATAGTAAATGTAGCTTAGTTTACTCTTCTTTTCT TTTTCAGTAGTTGAATAACTGTCTATACAGCTGGATAATGACCTGGCATGTTAGTTACGCGTGTTTGTTACACTTTCAGT TGTTACTCTTAGCTATAAATAGCAGAGCTTGTATCTTTGTTCAGTTGTAGTGAAAATTGCTCAATTGTGTTACCTCTTAT TTTCTTATCTTTCTTCCCACATATATGTAAATCCCAACTTCTCCACTTCACATTCATTTACTGTTTTACATAGTATTTGT AAAAGAAAAGACTAAACTGTATGACTAACTTGTTTTGAAATTTCTTTGTTGTAGTGCAATGGGAACAGAAGATTCCGATA TCTGTATCATCAAGGAGCCAGATAGTGTCATAGTCTATTCCGATGGCATTTCCCGTGATTTAGGTCATGAAAGTGCTGAT CATCACAATATTACAGAGTCTTATGAACATTTCAATGAGAATACTGAACATCATAGTTCAGAGGAGAGCACAAAGGAATA TGAGGTGAAGGAATGTACAACAGAAGTTTCTGTTAAGACCTCCAATGTCTCTACTATTGAAACACGCGAGAAGTTGCCCT CAGATTTTGAGGGTGTCATCAGTGAGAAAAGTTCAAAATCTCATAAAACAAGAGGTAATCACAAGCCACAAGATACTGGG AAGCATGGATCTAGACCTTCTGCTGGGAATCTTCATAGTAGGAAGGCAGGTGGTGTTCAAGTCAGGCCCACAGTTCCACA ACCATTTTCTCTAGCAACTGAGAAGCGTGCCACTGGTGTAGCACGTCCTACTTTTGAACAAGATAACATGGGTAGTAATG CGAGAAAATCATTTAATCGAAAAAATGTGCTATCTCCCAATATACTCAAGCAGAATCAGGTATATGCAATTTGCTTCCTC CTTTAATTATTTTGATGTCTTTATATTCTTGGAAGGTTTAAAGAACAACCCTTCTATCAGTGTTCCTATAAATAAAATAT ATGGTCAGAGAAGAAAAGCTTCAAGGTTTTAGATGTGATACTCTTGTGCATTCATCCTTAGTTCCAAACAAGATAGCTTA AGGTTTTGATGCCGACCCGCTCAAGACATTCTTCAGATTCGTAACATAACCAACTTATAAGGACCTCTACAAAATTTCAA TTTAAAGAAAATGATTTTGAATTATCTGTTTCATTGTCTAGTCCATTGCTGAAACTTTTATGATTAATTTGTTACAATGT ACTTGCAGTTAGTCTTGAAGCTTTTGTTTTGACTGTTTTCGCCTTGCAGTTGAAATCACCTTTAGATTCAAGAAAGCCGT TGCGACCTGATAGCAGTAAGCATGCTGATGAGGACGATTCTTGTTCGATTACTTCTATGTATCCTCTTTAAACCCTGCAG TTGAAGAGCGTCAAATTCTTATCTCATGACTTTTCTTATTTTGGCAATGGTTCTTCTACTTCCTCTTAGAATTCAAATTT GATATTACTCCTTGACCATGTAAAGAGGTGCAGCTTCTGTGCAGTCATTCAAGTCCAGGGCTACTGTTGCTTCTGCTCCA CTGTTTCGGTCCACTGAACGTGCAGAAAAAAGGAAGGAGGTAACAACTGGTGTATTAATTAGCTTTGGATAAATTTTTCT TCCCCAAATTGATTGGTGCATGCCGCCCCTTTTTTTGCACGATAGTTTTATTCGAAATTAGAGGAAAAGCACCAAGCTAT GGAAGCTGAGAAGAATCAAAATGAAACAAGGACTAAGGTACCGCACCTTCTCAAGTATCTTCAAAACAAGAATGACATTA TCATTATGTTTCTTCTTTTCTCCTTATAAATCTGGATTATTAGTTTTCTAATTTCTTACTCTATTTTCTTCATAATTTCG AAACATTGAAGGAAGAGATGGAGGAAGCTATCAAACAGTTGAGGAAGAGTTTAACGTTCAAAGCAAGCCCTATGCCTACC TTTTACCATGAGGGGCCTCCGCCTAAGGTTGAATTGAAGAAGGTATGTGCTAATCTTGTACCTTCAGCAGTATCTTGTAT GAGATTCAGTTTAATCAGAAAAACAAAAAAGTTCCATGTTAAGCTCTCAACGAAAATTTCATCACCAGACACTTGAAAGC AGCATATTCTGATCAAGTTGTTACTAGTAAAGATATTTTTTAAATTGTGGGCATGACAAAAATTGTGTAACTTGCCTGGG CCAGCCTCCACCTACACGTGCGAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAACAATGGTGCAATTAAGTTAGGTGAAG GGGACAAGGAGAAAAAAGCTGTTGCTCAACAAAAGCATCACACACTGAAGACCAACGACTATGGTAGGAGTGATGTAAAT GATGAAAGCAGCACATATGACCTCAACAACAAGGCCAATCACACTCAAGACGTAAATGTGATCAAAGTAACTGGATAAGC AGACCTGGAGAACAACAGCCCGTGAAGTTTTCAGTGAGATTTGTGTTTCACTTATTTTAATTTTAATTTATGAGTCTCTG GGGATTGTGGTCTTGTTTCTCACAAGTATTATGAAGCATGTTTCACTTTGTTTCCTCTTTTAACTTATATGCACTTGCTG CTGTGTGCATTATGTAAGTAATGGAATTGTTTATATGCAATTTAATTCAACTTATTTGTAAAAGGAAATCCTATTTTCTT AAAAGAGCTATTTAAGCATTTGTTCGTCTGCCTGAACTCCAGGATCAGACTGTTTCATGTTGTTACTAAACATGGTAAAC AGTAATTCTGCTTCATTCTTGCCAATTTTATTGCTATTATCCCTCCTATTATCAATGCTACACGGGGTACTTGGAGTAGG ATAGAAATTGAGGAGGTAATGAATAGTTTTTGTCCAGACCGATCCAAATGGCCATAAGGCCCAAATATGATCCTGGATGG CCTAGAGGACTCACAAGTCACAACCGAGTGAATTCTGTGTTGGCC
CDS sequence (LotjaGi5g1v0186800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACAGAAGATTCCGATATCTGTATCATCAAGGAGCCAGATAGTGTCATAGTCTATTCCGATGGCATTTCCCGTGA TTTAGGTCATGAAAGTGCTGATCATCACAATATTACAGAGTCTTATGAACATTTCAATGAGAATACTGAACATCATAGTT CAGAGGAGAGCACAAAGGAATATGAGGTGAAGGAATGTACAACAGAAGTTTCTGTTAAGACCTCCAATGTCTCTACTATT GAAACACGCGAGAAGTTGCCCTCAGATTTTGAGGGTGTCATCAGTGAGAAAAGTTCAAAATCTCATAAAACAAGAGGTAA TCACAAGCCACAAGATACTGGGAAGCATGGATCTAGACCTTCTGCTGGGAATCTTCATAGTAGGAAGGCAGGTGGTGTTC AAGTCAGGCCCACAGTTCCACAACCATTTTCTCTAGCAACTGAGAAGCGTGCCACTGGTGTAGCACGTCCTACTTTTGAA CAAGATAACATGGGTAGTAATGCGAGAAAATCATTTAATCGAAAAAATGTGCTATCTCCCAATATACTCAAGCAGAATCA GTTGAAATCACCTTTAGATTCAAGAAAGCCGTTGCGACCTGATAGCAGTAAGCATGCTGATGAGGACGATTCTTGTTCGA TTACTTCTATAGGTGCAGCTTCTGTGCAGTCATTCAAGTCCAGGGCTACTGTTGCTTCTGCTCCACTGTTTCGGTCCACT GAACGTGCAGAAAAAAGGAAGGAGTTTTATTCGAAATTAGAGGAAAAGCACCAAGCTATGGAAGCTGAGAAGAATCAAAA TGAAACAAGGACTAAGGAAGAGATGGAGGAAGCTATCAAACAGTTGAGGAAGAGTTTAACGTTCAAAGCAAGCCCTATGC CTACCTTTTACCATGAGGGGCCTCCGCCTAAGGTTGAATTGAAGAAGCCTCCACCTACACGTGCGAAATCTCCAAAGCTG GGCCGGCGAAAGAGCAACAATGGTGCAATTAAGTTAGGTGAAGGGGACAAGGAGAAAAAAGCTGTTGCTCAACAAAAGCA TCACACACTGAAGACCAACGACTATGGTAGGAGTGATGTAAATGATGAAAGCAGCACATATGACCTCAACAACAAGGCCA ATCACACTCAAGACGTAAATGTGATCAAAGTAACTGGATAA
Protein sequence (LotjaGi5g1v0186800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTEDSDICIIKEPDSVIVYSDGISRDLGHESADHHNITESYEHFNENTEHHSSEESTKEYEVKECTTEVSVKTSNVSTI ETREKLPSDFEGVISEKSSKSHKTRGNHKPQDTGKHGSRPSAGNLHSRKAGGVQVRPTVPQPFSLATEKRATGVARPTFE QDNMGSNARKSFNRKNVLSPNILKQNQLKSPLDSRKPLRPDSSKHADEDDSCSITSIGAASVQSFKSRATVASAPLFRST ERAEKRKEFYSKLEEKHQAMEAEKNQNETRTKEEMEEAIKQLRKSLTFKASPMPTFYHEGPPPKVELKKPPPTRAKSPKL GRRKSNNGAIKLGEGDKEKKAVAQQKHHTLKTNDYGRSDVNDESSTYDLNNKANHTQDVNVIKVTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 370 | 370 | 3.2E-107 | – | |
| PANTHER | 1 | 370 | 370 | 3.2E-107 | – | |
| MobiDBLite | 45 | 212 | 168 | - | – | |
| MobiDBLite | 45 | 67 | 23 | - | – | |
| MobiDBLite | 68 | 83 | 16 | - | – | |
| MobiDBLite | 84 | 115 | 32 | - | – | |
| MobiDBLite | 159 | 192 | 34 | - | – | |
| MobiDBLite | 194 | 211 | 18 | - | – | |
| MobiDBLite | 224 | 245 | 22 | - | – | |
| Pfam | 237 | 293 | 57 | 8.2E-21 | ||
| Coils | 250 | 285 | 36 | - | – | |
| MobiDBLite | 257 | 386 | 130 | - | – | |
| MobiDBLite | 257 | 283 | 27 | - | – | |
| MobiDBLite | 329 | 358 | 30 | - | – | |
| MobiDBLite | 359 | 386 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0186800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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