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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0189800 |
| Transcript ID | LotjaGi5g1v0189800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor family protein; TAIR: AT2G34440.1 AGAMOUS-like 29; Swiss-Prot: sp|O64703|AGL29_ARATH Agamous-like MADS-box protein AGL29; TrEMBL-Plants: tr|A0A151T3P0|A0A151T3P0_CAJCA Agamous-like MADS-box protein AGL61; Found in the gene: LotjaGi5g1v0189800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47926923..47928697) extracted from Lotus japonicus Gifu genome v1.2.
CTAACACTTAAATTATAAAGTGCACCAACACTGCCCCATTCCTCATTCCAATTGCTGCTGCCTTTCATAGAAATGGCAAG TATGTGAAGCAGTACTGCTCGCTTTTCAATTGCTGTCTCCGGCACTCCTTTGCGACTCACCATCCGTTCAATCATATCAT CCGGTTGCCGCTTCTAATCTGATTTTTAGGGAATCCGGTTTGTATTTTTTTTATTCAATCAATCTCAGTCACCATCAATT TTTGATACACATTTTTCGATGTTACACGAGCACCAATTTGTATATGTATGTATGTATCTGTGTTGTCTGAGTTCTTATTG CTATTAATACCAATTTTCTATGATGTTTTTATTCTCCATCCATGTGCTATTTCACATTTTGACTAAAATAGAGAGTTTCA GTGATTTAGAAAGTGACTATGGAGTTTTTGGTTTCAATTCTGGCACTACTAGATGTAGATCCGTCTTTTTTAAAGTCAAT GATTTGTTGTTTAGATTTGATATGTGAATCTTTTTAGATGTCGATCCACTTGTATTTTATAAACACACATTATTCGTTTT GATTTATGATCGAGCGTGACGCTCAAATTAGAAAATTAAACATCTAGTACATGGTTTGGTGTCTGGGCGGTGATGTAGTG CTTATAGAAAAAAAATTTGTTGGAAGATGTTTATTCGTTTTAGTTCTCAAAAGATTTTTATCAAAAGTCTCTGAAAGTGT AATTTACGGTTCAATTTAGTTTCTACATATACAAAAAGATAAACATTGTCATGTTTAGGAGAAACTAATATGATTTTGAT ATTCATTTTCCATGGTTTAATTGGATTTTAATATTGCTTTTTAAAGTTTAGTATGAATTTTAATTTACATTTAATTTCAC CCCTTTCATATCAGTCAATATATAATGTCCACAAAATATAGCAATAGGAATGTTATAAGAGAAATGCTGAGGATCTCTTT TGCTGAGTGTGTATGTAAATCCCTTACTTTTCTTTTCTATTTTATTTAGTAATTAGAAGTGTGAAGCAGGTGAAGGAATC ATGGGTCGAAGGAAGATTGAGATTGCACTTGTGAAGGATCCCAACACAAGGCAGGTCACATTCTCCAAGCGTAGATCAGG CTTATTCAAGAAAGCTCATGAGTTGTCCATTTTGTGTGGATCAGAAGTTGCCATTGTTGTGTTTTCTCCAGGGAACAAAC CTTACTCCTTTGGCCACCCAAGTGTTGATGCTGTTGCAGCCAAGTTTCTTGATGAAGAGAGCAATCCAAATGATGATTCC CAAGATGGTAGCACTAGTGATGATGACTCTTCTACTGAAGTTGTTGTTGATGTGGAGGAACGGAATCTACAACTTGCTGA TGTGATGGCTCAAATTCACAAGGAGGAAAAGAAGGCTAAGGAACTTGATGAGACCTTGAAACAACTCCAAGAGGGTCAAG AATTGGATGATTTGTATGTGGAAGCACGAGGTATGGTGAGAAAGCGTCTCGATGAGTTTGAGGTAGCGGATAGTATGATC CTCCTTTCACAGAAACCTGTGGAGGGAATCACGGCAACAAAACAAGTTGCTAGAAAAAGAAGAAGAAAGAATTGATGTTT TGTAATATGTTTGCATCTAATTTCTCCCTTTTTGCCTGTAACTTGCATTTTGCCATATGATGGGAGAAAATAGAAGTTGT GGTGAATAATGTGCCTTCTCTATTGTTGAATTCCTGACATTTAAGAGGAAATAAAAATAAACTCATTCTGGAAGATATTT GAAATATTATATAAG
CDS sequence (LotjaGi5g1v0189800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGAAGGAAGATTGAGATTGCACTTGTGAAGGATCCCAACACAAGGCAGGTCACATTCTCCAAGCGTAGATCAGG CTTATTCAAGAAAGCTCATGAGTTGTCCATTTTGTGTGGATCAGAAGTTGCCATTGTTGTGTTTTCTCCAGGGAACAAAC CTTACTCCTTTGGCCACCCAAGTGTTGATGCTGTTGCAGCCAAGTTTCTTGATGAAGAGAGCAATCCAAATGATGATTCC CAAGATGGTAGCACTAGTGATGATGACTCTTCTACTGAAGTTGTTGTTGATGTGGAGGAACGGAATCTACAACTTGCTGA TGTGATGGCTCAAATTCACAAGGAGGAAAAGAAGGCTAAGGAACTTGATGAGACCTTGAAACAACTCCAAGAGGGTCAAG AATTGGATGATTTGTATGTGGAAGCACGAGGTATGGTGAGAAAGCGTCTCGATGAGTTTGAGGTAGCGGATAGTATGATC CTCCTTTCACAGAAACCTGTGGAGGGAATCACGGCAACAAAACAAGTTGCTAGAAAAAGAAGAAGAAAGAATTGA
Protein sequence (LotjaGi5g1v0189800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRKIEIALVKDPNTRQVTFSKRRSGLFKKAHELSILCGSEVAIVVFSPGNKPYSFGHPSVDAVAAKFLDEESNPNDDS QDGSTSDDDSSTEVVVDVEERNLQLADVMAQIHKEEKKAKELDETLKQLQEGQELDDLYVEARGMVRKRLDEFEVADSMI LLSQKPVEGITATKQVARKRRRKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 71 | 71 | 1.83E-27 | ||
| SMART | 1 | 60 | 60 | 1.7E-34 | ||
| ProSiteProfiles | 1 | 61 | 61 | 26.604 | ||
| CDD | 2 | 75 | 74 | 1.58985E-32 | ||
| PANTHER | 2 | 174 | 173 | 2.4E-58 | – | |
| PANTHER | 2 | 174 | 173 | 2.4E-58 | – | |
| PRINTS | 3 | 23 | 21 | 2.6E-20 | ||
| Pfam | 12 | 57 | 46 | 3.9E-25 | ||
| Gene3D | 13 | 93 | 81 | 1.7E-26 | ||
| PRINTS | 23 | 38 | 16 | 2.6E-20 | ||
| PRINTS | 38 | 59 | 22 | 2.6E-20 | ||
| MobiDBLite | 72 | 94 | 23 | - | – | |
| Coils | 105 | 132 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0189800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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