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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0198700 |
| Transcript ID | LotjaGi5g1v0198700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coiled-coil domain-containing protein 12; TAIR: AT3G05070.1 Cwf18 pre-mRNA splicing factor; Swiss-Prot: sp|Q8R344|CCD12_MOUSE Coiled-coil domain-containing protein 12; TrEMBL-Plants: tr|I3T4D8|I3T4D8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0198700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49626672..49629399) extracted from Lotus japonicus Gifu genome v1.2.
AACAAACTTTTGATTGGAGTGAATATATTGGGGATTAGGGTTTCTCTGAATAACAACAGAACGGAAGAAACTTGAAATTG GAGGCAAAGAGATGGGTAGCGAAGAAGAATCGATTGAGCAAACCGTCGCGTCCCGTCGTGAAAGATTGGCAGCATTGAGA GCAGCTCAAGAATTATCGAATGCTCCTGAAGCTGGAACCGAACCTGAATCTGCAGCCGCAAATGGCAACGATGATCGAGA TGAATCACCACAAGAAGAACAAGAGTATGCAGTTGCAGTTGCAATTTCATTGATTTTCTGAATTCAATTGACAATTTCGA CACTAATTTCAATTTTCATTGCAGAAATCTGAGCATGAAGTTCCGCAACTATGTTCCACATGATAAGCATCTTCAGGAAG GGAAGCTTGCCCCTGCAGTGTTACCGAAGTTTGAAGACCCTGTTGCTGCTTCTGCGCCTGAGCCTCATCCCCAGGAGGTA AATGGATTCAGCTTCAGCTTCAGCTTCTTTCTTGTGATCACCCTTGTTTGATTCTAATTTGGTATTTTTATGTTTTAGGA CCCTTTTCTGAATATTGCTCCTAAGAAACCTAACTGGGACCTGCGCCGAGATGTGCAGAAGAAGCTTGATAAGCTTGAGA AGCGAACTCAGAAGGCGCTCTATCAGCTCATGGGTAAGTTCTTACTGTCTAGTTCACATTTGCTTGATGATCTTGCATTG ATGTTTAGATAACTGGTAACTCAATTGTTCTGGTAAATTGGATTATGGACTATTTAAGTCTCCTAAACTAGGAACAGCGC GTTTGAATCAATTACGCGACCCAGAAGCTACTCACAGAAGTTTCTCCCTAGAATTGTTTTTGGCTGCCGAATCAATTGTA GAAAGATTTCCAAACATGCATGAAGACTACTAAGGAATTACATAACTGAAGGAAAGTAGGGAGAATAGAAAAATAATGAA GTTACTTTTTGCCAAAAACCATGACCCCTGATGTTCATATTTGAAGTTCTTACATGTGTTTTATACAGGCAATTTATGGT AGGCATTGGAACAGTGTAAAAAAAATTGATTATGTTTTTGTAATGTATAGGGCAATACTAAAATTACGTATTAAATTTTG ATTTTTGTATACATAAACTGCTCTACTGTAATTCTTAGCGGATAACCCATTTAGGTTTAGCTGTGGACTGATGAATAAAA GGTTTGAAACTAACGGAAAAATCAAATTGCATTTTTGCTTTAAGCTTAATATATCTTGGTCAATATTTATCTCAATTTTC TAGAGAAAGCCACACTTGAACTATTAAATAAATGACTTTCAGCATTTTATCTGTATATTTTTCAATTAGATGCTAGTGAA TCGTATGAAACTTTTGTGACAGATGAAATGTTAGTATAGTTATCAATTTGAAATCTCACAGGTTCTTCTGTATCTGCTGA CTAGATTTTCATATCTAGGCCATGCAGATTATATTTGGTTACTTGGATGAGGGAACTTCTCTATAAAGATTTCCCCATCA GTAATATCTTACTAGTTTGTAAAAACTACACATATGTTTTGAATTGCTTTTGTACCATGAATGTGGGGACATTACAAATT TACAATGACTTGCTTATGTTTTTTACAGTGGAACAAGAGAAGCAAAAGGAGTTGGCTGAGGGAGATGATACAAATGGCAC ATTAGATTAGATTGCAAATTGTTGTAGCAACTGAGATATTGAAGTGATATGTTAAAAATTCATATCCCAATTAATCTGCT TAACTCAAACTAAATTGGGTTCTAACATGCCAGTCTTTGTGACATTGCAGTCTATCGTGAGTGTTGTATAATCCACTTCT CTTTCAATGACCTAGAATGAGGGTACGTATTAGACATGATTTAGAGGTCAAATATTCCTGGATCTTGATAGGTGTATTAA AATTTTGTTACATATAAACATTGCTCAAGTAGCCGAGATGTAAAGATTTTGCTTTGCTTTGTTTATTTGTTTTTAATATT TCTTGAGTAGTAGTGCTGACATTAAAAAAATTGGTTAATTACTGATTTAAGGGATTTATAATCTTTCAGGCAATACTACC CTACACAGAGTGACTTCTGGGTTTGGGTCTTGGAAGTTGTCATGAAACTAGCGGTTGTTTCTTCTTTAAAGCATTCTTTT TTCTTTTACTAGTGATGTGAATCAAAATATTTTGGACTGAAAGCTTGTACCTAAGAAGAAAATATTGTATCGACACATAT TAGTAAGTTGCACAAAAGTAGGCCCTTCAATTTATTGTCAATGTTTGGTGTGATCTTCGTAATTATATGTTGTCTTTTGT ATTTCATTATACTCCTATGAATTATATCATTATTCTATTTGTGTAATATAATTTTCTTATTACAAAAATATGATAGCAAA TATTGATGCTGTATGTGTAATGATAATTAAAATGTGGTATAGCGTTGTATAGTCTTTTCATCGTCAATTGCAAGTCTTTG TATTCCCAAGAACATAAATGATATAATAACCCATGTCAAAATTAATAAATGGAATTAAAATGAGAGAAAGAATTGAATTA CACAGGAATAAATTTGGTGCATGACTCTCTTGAGCACAAGTCATTCCTATAACCAATTAAGTAATGTCTTCTTATGCCTA TGATGGTCGGGAATGCCATGGAAGTAAGGAATCCCAGTAGCCCGAATCCAGTCATCTCCATGGAAGAATTTGGATGCAGA GAACCAAT
CDS sequence (LotjaGi5g1v0198700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGCGAAGAAGAATCGATTGAGCAAACCGTCGCGTCCCGTCGTGAAAGATTGGCAGCATTGAGAGCAGCTCAAGA ATTATCGAATGCTCCTGAAGCTGGAACCGAACCTGAATCTGCAGCCGCAAATGGCAACGATGATCGAGATGAATCACCAC AAGAAGAACAAGAAAATCTGAGCATGAAGTTCCGCAACTATGTTCCACATGATAAGCATCTTCAGGAAGGGAAGCTTGCC CCTGCAGTGTTACCGAAGTTTGAAGACCCTGTTGCTGCTTCTGCGCCTGAGCCTCATCCCCAGGAGGACCCTTTTCTGAA TATTGCTCCTAAGAAACCTAACTGGGACCTGCGCCGAGATGTGCAGAAGAAGCTTGATAAGCTTGAGAAGCGAACTCAGA AGGCGCTCTATCAGCTCATGGTGGAACAAGAGAAGCAAAAGGAGTTGGCTGAGGGAGATGATACAAATGGCACATTAGAT TAG
Protein sequence (LotjaGi5g1v0198700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSEEESIEQTVASRRERLAALRAAQELSNAPEAGTEPESAAANGNDDRDESPQEEQENLSMKFRNYVPHDKHLQEGKLA PAVLPKFEDPVAASAPEPHPQEDPFLNIAPKKPNWDLRRDVQKKLDKLEKRTQKALYQLMVEQEKQKELAEGDDTNGTLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 154 | 152 | 3.1E-53 | – | |
| Pfam | 7 | 142 | 136 | 1.0E-33 | – | |
| MobiDBLite | 19 | 64 | 46 | - | – | |
| MobiDBLite | 43 | 58 | 16 | - | – | |
| MobiDBLite | 91 | 112 | 22 | - | – | |
| Coils | 118 | 138 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0198700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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