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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0200700 |
Transcript ID | LotjaGi5g1v0200700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Metacaspase; TAIR: AT1G79320.1 metacaspase 6; Swiss-Prot: sp|O64517|MCA4_ARATH Metacaspase-4; TrEMBL-Plants: tr|I3T222|I3T222_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0200700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49968443..49969979) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCACGGCGCGTCTGTTAGGGTTGGTCTCGATAACATGGAACCACCATTGAAGATGAAGGAGGCTGAGAAGCAGTCGA TGTCTGAGACGGATATGATGATTTCAAAGGCGATCAAGCAGGCTGAGATAGATCGAATGATGATGTTGAAGGGTAAGAAG AAGGAGAAGAAGGCCGTGTTGATTGGATTGAAGCACCCAGACCCGCAGATGAACACTGTCGATGTGAAAGGGCAGATATT GAGGATGAAAAATCACCTCATGAAACTGCGTGGGTTTTCAGAGGATAACATCACCCTCATGATTCAGGATGAAGAAGAAC CGGATAACACACCCACTGATTTCAACATAAGTCGTACGCTATGCTCACTGGTTCTATCTGCTTGGAGCGGTGACATCGTC TTCATCCACCTCATAGCCTATGGCTGTTCTGATGGCCGTATTATCACTGCTGATAATGAACACGTCTTTGGTACGTACCC TCACTTGTTTTAATTTCTTTTCTTTATGGATGGACATGGACTGGTGGTTGATTTTAATTTCATGATATATATATATATAT ATATATATATATATATATATATATATATATATATATATATATATATTGCTGCCATAATTTGTTTTTTCTGCTTGTGTGCG TGCAAACAACAAACAGATAATTTTTTCAGGGGACTTATATATGTAGCCCGCCAAAACAAAACTAATCTGACAATTGTATC GGATTGCCTAATCAGTCCTGTTGCCAAGTGTCCTTGTCCTAAAAACCCATTAGGTCGCAAACCTTGGGGGAAAATGAATT TGGAGGAAAGAAAAAAGGAACTAGAAAAGGCACGAGCAATTAGGCTTTCCACACCCGCAGAACCAGTCACTATTGGCTTT TCATTTACCGGACCCACCTCTTTGTCTTCTGTCAATATCCTCAACTCCAATGACAAGAACAAAGCTACTCAAGATGTTGA TCATCGTGTAATTCTGTTGATGCCTTTCACACGTGATCCAAACGCCGCCACCAACGTTCATGCATCTGAATTATTCTTCT GCCCACCACCAAATGGAGCTGGAGCTTCTTCTCCTCAGCACCGCACATTATACGGGGGTTTTACCAAAGCCATACTTGAT GTAATCGAAGAGACTCATGACGCCCAACTTACAAACTTGGACCTTGCTAAAAAGGCTATGGGGAAACTTGGAGGACAAAT ACCTAGTCTCCTATGCGATTCCCAGGACCATGCTTATGCTTCTTTTCTGTGCTGATCCATCTTATGTTGGGAGACTTTTC AAGTCCATATATGTAGTTCGGTTCATGTTGGGTTCAATTGGTTCATGTTTCTTTATGTTTAGTTCGGTTTGCATCCAACA AACTATGAGACTTGGATTTAAGTTCTTGTTTTCTGCTGTTTAACTTTCATATTTGAATTATGTACACACACATTCTATTC TATTAACGGCCTATTGTAAATTATGAATCATGTTTGGATATTAGCTTCCTATATGTCTCATTGACGTAAATTATGAATAT GTTTGGATATTAGCTTC
CDS sequence (LotjaGi5g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCACCATTGAAGATGAAGGAGGCTGAGAAGCAGTCGATGTCTGAGACGGATATGATGATTTCAAAGGCGATCAA GCAGGCTGAGATAGATCGAATGATGATGTTGAAGGGTAAGAAGAAGGAGAAGAAGGCCGTGTTGATTGGATTGAAGCACC CAGACCCGCAGATGAACACTGTCGATGTGAAAGGGCAGATATTGAGGATGAAAAATCACCTCATGAAACTGCGTGGGTTT TCAGAGGATAACATCACCCTCATGATTCAGGATGAAGAAGAACCGGATAACACACCCACTGATTTCAACATAAGTCGTAC GCTATGCTCACTGGTTCTATCTGCTTGGAGCGGTGACATCGTCTTCATCCACCTCATAGCCTATGGCTGTTCTGATGGCC GTATTATCACTGCTGATAATGAACACGTCTTTGATAATTTTTTCAGGGGACTTATATATGTAGCCCGCCAAAACAAAACT AATCTGACAATTGTATCGGATTGCCTAATCAGTCCTGTTGCCAAGTGTCCTTGTCCTAAAAACCCATTAGGTCGCAAACC TTGGGGGAAAATGAATTTGGAGGAAAGAAAAAAGGAACTAGAAAAGGCACGAGCAATTAGGCTTTCCACACCCGCAGAAC CAGTCACTATTGGCTTTTCATTTACCGGACCCACCTCTTTGTCTTCTGTCAATATCCTCAACTCCAATGACAAGAACAAA GCTACTCAAGATGTTGATCATCGTGTAATTCTGTTGATGCCTTTCACACGTGATCCAAACGCCGCCACCAACGTTCATGC ATCTGAATTATTCTTCTGCCCACCACCAAATGGAGCTGGAGCTTCTTCTCCTCAGCACCGCACATTATACGGGGGTTTTA CCAAAGCCATACTTGATGTAATCGAAGAGACTCATGACGCCCAACTTACAAACTTGGACCTTGCTAAAAAGGCTATGGGG AAACTTGGAGGACAAATACCTAGTCTCCTATGCGATTCCCAGGACCATGCTTATGCTTCTTTTCTGTGCTGA
Protein sequence (LotjaGi5g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPPLKMKEAEKQSMSETDMMISKAIKQAEIDRMMMLKGKKKEKKAVLIGLKHPDPQMNTVDVKGQILRMKNHLMKLRGF SEDNITLMIQDEEEPDNTPTDFNISRTLCSLVLSAWSGDIVFIHLIAYGCSDGRIITADNEHVFDNFFRGLIYVARQNKT NLTIVSDCLISPVAKCPCPKNPLGRKPWGKMNLEERKKELEKARAIRLSTPAEPVTIGFSFTGPTSLSSVNILNSNDKNK ATQDVDHRVILLMPFTRDPNAATNVHASELFFCPPPNGAGASSPQHRTLYGGFTKAILDVIEETHDAQLTNLDLAKKAMG KLGGQIPSLLCDSQDHAYASFLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 3 | 209 | 207 | 2.2E-11 | – | |
PANTHER | 44 | 169 | 126 | 8.7E-18 | – | |
Pfam | 44 | 337 | 294 | 4.4E-11 | – | |
PANTHER | 44 | 169 | 126 | 8.7E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0200700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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