Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0207900 |
| Transcript ID | LotjaGi5g1v0207900.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; TAIR: AT5G28850.2 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q5QIT3|2AB2B_ARATH Serine/threonine protein phosphatase 2A regulatory subunit B''beta; TrEMBL-Plants: tr|A0A0B2Q4A8|A0A0B2Q4A8_GLYSO Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; Found in the gene: LotjaGi5g1v0207900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50968320..50976860) extracted from Lotus japonicus Gifu genome v1.2.
AACAACATGGAGGTCGTCACTGATGCGGCGTCGTTGGACGTCGAATTGTTGCAGCTGCCGGAGTTTTCAGCTTTGGCTCT CAAGTCTAACTTCAATTTCGTTGAGAAGCTTTTTGAGGAGTGGTTGTCGCTTCCTGAAAGCAATCGACTTGTAAGGCTTC ATTTCATTCCCAATTTCTTACGTTGGAAATTTGCATTTTTTTGAGGGTTTTATTAGCTTGCTTTTGTTGATTCATAGAGT AACTGTTGTTGGTTATTAAGCAATGATTATTTTGTGAGATAGATTCAATTTCTTACGTTACTTTTAACTAATTGTCCTGT TGCCAATAGGCAATGCTGTTGTTACTTTAGCTCAAAAGTGGTGTAATTAAAGATACCACTGGTTTCTATAGCATTCCGCG TGTTTACTTCAATGCGAGTGTTCTTCATCCTCACCATATATTATGTAGAAATCAATTTCATTTGTTATAGTTCTATTTCT TAAAAGGAATCACCATTACCATACCAACAAGGTCTAGCAAAATTGCTAGATAGCTGGGTTCCTTAAGCATTTAGTCGAGG GTTTGATCATTAGGCGGTGTTTATGGAGAAGGATTTGTCGGGAGAGGCCTACCCACTTAATGTCATCTCTGAGTCTCGAG GGAATTGGTCTCACGGCTGCCGACTGTGAGGATACCTTGGTAAAACCAAAAAAGAGTAATCACCATAGGCCATCCAAATG CTTCTAAGTCCTACTTACTCCCAAGTCATATAAATAAATAATCCCCTGGCAATACTTGAAATCAGTGTTGTCAAATAGGG GTTATAGCGGCACTATAGTGCTATAGTGTAGTGCTTTTTTGGCTTACCACTACTCCGTTATTACCTGCTATTATTCGCTA TTTTTCCCTTTAAGAGGCTGGAAATTACAGATTTTTGGCTTACCACTATAGTCCGCGAGCTGCAATTAACAACACTGTTT GAAATATATGAAAAGCTGGTTAGCAATGCTATTCCTTTTGGTATTTTTATTTTGGGGTTTCTTGAAATGGTTAAGTTGTT TGTTTTCCTTGATCACTATACAAAATATAATAACATATGTGCTTTGGTGATATTGTTTTAATAACTCCCTTGCTAATTGT ATAGGTAACATCGTTGTTGAATGACGCTAAGTCAGGTGCTCCCTTGAATGTCCCAGGGAATTGCTCTAGTCCAAATGCTG CGAGCAGTCCTTTGCCTTCCATGTTTCCGGCTGGCACTGCTCCACCTCTTTCTCCAAGAAGTACATCTGGTTCCCCTCGC ATTGTGAAACAAAGAGCTCCTTCAAATTTGGGCTCTCCTTTAAAAGTTGTCAGTGAGCCAATTAAAGAAGTGATACCTCA GGTTCAGCAAGTCTTTTGCACTTTTTTTTATACATAGTGAAATTTATTACGAAAATGGAAGGGAAAGTATAAAGGAGAAC AAGATATCATTCCTAAAAAGAAAATGAATTGCAGCCAACTTGCCTAATCTCATTGCACGTATGAAATGACAACTTTTCTT GAGATAGTCATTTGCATAACACCAACGCAAAGGCATACACAACCCTGTCCCAGACCATAGCAAGTCGAGAGACACCCTCG AATATGTAAACACAACTCTCCATCCAAATGCCCCCAAAGAATTGTATAAAGTATAAACTGTTGATTGCCATGAAAATTTT ACCTTGTTTTGCTCAAATCTGTTACTTAATCATAAGAAGCTGTTCTAACTCTCAAGGACACCCCTGCCTGAAGCCCCATG AACTTGCTGCAAGTTATTTATATTAATCCTATTAAGAACTTCTGTCCAGTTCTTTTAATACTTTATTTAGTGATACTTTC CTCTCATACCTGGTCTGCACTCTGCAGTATGTGTTTATTCTTTCTTTTGCCCTCTTCTATTGATTCCTGTTATCTTAATA CTTACTACATAATTATTTGCATGGCTGCAGTTCTACTTTCAACATGGATGTCCACCTCCAAATGAATTGAAAGAACAATG TTTGTTCAGAATTGATCAGTTATTTCATGATCACTTGGATGGCCTGCAGGTGCATGGTGAGATATCATATTATTGCAACT GGGGAAAAGAGGTTTTAAATGTTTCATATTATAGTTTTCTAAGTAATTGGGAAAAGTGTTCTTAAATGAGCTTTATATCA TTGTTTTCTGAGTTATCACACTCTCCCCTCTTTAAGTTGCATAAAATTGGTGTACTTTAAATGTTGCCAAAAGTTAAAAA GGGGTGATTTGTATAAAGTTTACTTGCTAATGCCTCCTGATAATTGTTTTATTTGTTTCCTTGGTATATCAGAATTCAAG TCAATCACTAAGGAAGTATGCAAGCTGCCATCATTTTTTTCCACTTCTCTTTTCAAAAAGATCGACAATGGAACTGGTAT TGTGACGAGGTGGGTACCTTTTTATTTTATTCTGGACACAACTCTTTAACCTTCTTTTGTCATGGATGGTGATTCTTGTT TGAGCTGTTGGGCACTTCAAAGTTTTGAGTCTAGGTGATGGAGTAGCATCACATTTGTTGTCATTCAGAAAGATTTTTCA CAGCTTAGCTCCAGAATTTTGTGGCATTTCTTTTTGTTAAAGGATAAGCTTGGACTTTCTCTCGCTGGCTAATCAAATAG GAAACCAACCATTTGCTTTGCTTCTTATCTACAGTATCTGTCAAATAACCACTTATCCCAAAAGCTTAAGCTGGTGGGTA AGGGCCACTTTAATGGTTTTATCTTATATTCTAACACGCCCCCTCACGCAAGAGCCCTTTGGGCTTGAAGCGTGGATAAA TGCACAGGCCCACCTACCATGTGCTTAATTAAATTCCACTTTTTAATTAGAAAATGAGGGGAGCAAGGATCGAACTCTAG ACCTCTCGGTCATAGAGGCTCTGATACCATGTCAAATAACCACTTATCCCAAAAGCTTAAGCTGTTGGGTAAGGGTCACT TTAATGGTTTTATATTATATTCTAACAGTATCCATTCCCTCTAGTCTGTTGTATTTCTTTTTGTAATTTCTCTAGACAAT GGACGCTTTTATTTTTTTACCTCAACGAAAATTTTGTTAAGTTAAAAGTAAAAAAAAAATCATATTAGATCTATACACCC AGCCTCTGTGTGTATGTACAATTAACTATGTGTTTTTCTGGTTGAAAGAGTTACTGCCATCATGTTTGATATGTTTGGTT GCTTGAGATCTTCATCATCACATAAAAATTGTCTTAAGCCAATGAGTTTCACAATATTTCAATATCTTCATCGCTGATTG ATTTTATTTTCAGTGCTAAGTTGAGTTTTCAAACAGAACTTAAGTTTTATTTTCTAAATCTTCTATTTAATTATGATTTT TTTCTTTGTACTAATGTGGTATAATATAATATCTGAGACTATTGTCCACGGCTCAAAGAAGGTGAAGCCAAGCATTAGAA GGAGTTGTGAGGTGTAGGAAAGAAGAAGCCAATAATATGCTGTAAAAATATTATAAGTTTTTATGAGAGGGTGCTTGTTG TTATACTTGGCACCAAACAAGAAATCTCCTTGGCAAATTACAATTATAATTTGGCTATATGTTTCTGGGCATCCTGCTCA TGTTAGTAGTGCATCATGTGCAAATCTTACCTTTTCCTGAGTGGAACATTCCATCTTTTGATTCAGATGTTATGCTGGTT ACATTATTGTGTGAAATATCATATTAAAAGTAAATCTTGTTTATTTGATTCTCTCTTTTCCCATGATGTTGTGGAATGGT CTTGTGCGTTGTAACTATTATTTCCTATTTCCTACTACTTATGCTTAAATCTATGATTTAATGTTCCTATAGGAAAGCAT TTATTGATTATTGGATTAATGGCAACATGTTGATGAAGGATACAGCTACTCAAATATACACAATATTAAAGCAACCACAA CTGAATTACCTTACACAGGTTATTATTATTATTATTCTATTTGTTCTGCTTTTCATTTGATTTAATTTTCTTCTGGGCCT TCAAAAGGTACATTCAGTCTTGGCTTGGCCTTTATCAAAATTTATTATTATTCAGGTTCAGTTTCACTTTAGGATAGGAT GATTTAACTTTCTATGGTCCTTGGCTTTGATGTATATATATTTGTATCCACCCTTATAAACAATATTCTGCTACATGTCA GGATGATTTCAAACCTGTCCTACGTGAGCTTTTAGCAACTCATCCAGGGCTGGAGTTCCTGCAGAGCACACCTGAGTTTC AAGAGAGATATGGTTTGTAATTGTAGACTGATGCAAATGAGTTTAGATTCTTGTAATACTTAGTTCGTTTGAAACTTCGT TTTCCTTGAAGATTTTTATTTCATTTACTAATCCAGGTGACATACCCAGGATCTGCTTCCTCTGTGACCGTAGACAGTAT TTATATGATAAATTCTTAGTTAATTCTATGTTTATGGATAAGGGTAGCTGCATGCATTAAGATAAGTGGGTGTTACTGAG TAAGAACACACACACACACACACGCATATGGAACAAAAATTTATCCAAGTTAGAAGAAATAATGTACAAGACAAAAACAA GATAAATGGTAATAAAGCAGGATTTTTTTTTTCTAAATTTTCTTATCAGCATCTTTTTTTTTCTTTCCTCATCAGCATCT TATGTTGACTTATAATAACTTATGGGGTTGGCCAAAGGATGTTTCTTCTTATTCCTCTGTAAAGCTGTGTTGTTTCTAAT GACTTTCCTCTACATTTGCTTTTCTCTGACTTTAGCGACCACTTTTGCGCCAGATCCATTTTTTTGTTCATCTTTACCTG CTGAAACGATTCCAACTGGTGTTTTTCCATCTGTAGCAATCTCACCACTATGTTGCCACTGTCATCTATGAGGCCAAAAT TATGCGTCATGTGCTCACTTACATGACAGCTTCTTCAATGCTCAATTGAAACTAATCTTCCCTTAGAACATCTTTGTTTC ATACTTCGTATGCATGATACTACCTAAAGTTCATAGCTGTAATTAGTTTATACAGAAATGCCTTGCAACAAAGGAACTAC TAGCCAATAAATATAAATTGTGATAAATACCATTTAATGTTTTTTTGTCTATAGTTTTCTATTTTCTATTCTCTGATTAT TGCAATTATAATGCATAGTATATTAGATAACATTTTTTATGAATAGAGTAACACTTCATGTAGAGTTCCAGGGGGGACTT CTTCATTAAAGGCAATTCTTGATATGTGTGTATAGTTTGGTGTCAACTTGTCTTTGTTTCTGGTATAATTTTTTTCTTTT CTTTTTGGTATTCGGTGCAATATTCTTAACTCGTCTTTCCAATATCGCAGCTGAAACTGTAGTATACAGAATCTATTATT ACATTAATAGATCCGGAAATGGCTGTCTTACCTTGAGAGAGCTGAAGCGTGGAAACATAATTGATGCAATGCAGCATGCC GATGAAGAAGAAGACATCAACAAGGTTTTGAGGTAGATATACTACCATTTGTGTCAAAATATTGTATTACCAAAATGCAT TGATCAATTTTATTTTTCGAATTATTTTCTGCAGATACTTCTCGTATGAGCATTTTTATGTTATATACTGCAAGTTTTGG GAGCTGGATACAGATCATGATTTTTTGATAGACAAGGAGAATCTCATCAGATATGGTAACCACGCGCTTACCTATCGAAT TGTTGATAGAATATTTTCTCAGGTTTGTGCCTATTACATATTTCTTCTGTCTTGAGATTTAACTATTTCTGTATTCAGCA ACAAGCCCTACACCTGTTTTCTTTTCAAACATGATAAGAGTTTGGTTCACTTCACTGTCCACCACTTCTGTTTATATGAT TTGTCAGATGATTTATTGAGGATGCAGATTTTGACTCTCTTCAATATTATTTCAGGTCGCAAGAAAGTTTACCAGTAAGG TTGAGGGGAAGATGGGATATGAAGACTTTGTTTACTTCATACTGTCAGAGGAGGACAAATCATCTGAACCAAGTCTTGAG TTTTGGTATTTGTTTCCCATTCATTATCTATTTCATTTATTAGTTTCCTTTTCTGAAAGGATTTGTCAGATTTGTTGGTG TGCAGTTGCAAATATGAGGAAGATTCAATGTTAAATTAGGCATGTTTATAACATGTTTTTTTTTTTTTGAACTGTAAACA TGCGCGTGTTTGAGTCATGGTTTTGAACTTCATCGGTTAATTTAATCTGTTGCTGGCAGTCTTTAATGTTATGTAATTTA AAGCAAGTAACTGAAGAGTACAATTCTTAGTGAAATAATGTTGATCCAGTCCCTTGTGCCTATTCACCTTGGGAGCATGG ATATTGTCCCTCCCGAGTCAGCGCGAGACGATGACCTGGTCGATGCCAAGAACACTTCTTAAGCCCACCAGGCGAACACG CTTAAGGGCTTAGAGCTGCGTCCCTCCTGAGTCATCGCGAGACAACGATCTGGTCGATCGCGTCGTAATTGGAAGGAACC CAAAGGCCTAAGCGCAATAACTTCCACCGGTAAATAGAAACCCGTAACCCCCAAGGAGAAATTAAGACAATTATTACCGC ATTTAACATATAATAAAACACATAATGATGCTGAAACCCCTAGCAACCCAAGAGGCAAGGGAGAGACCTTGTAAAGGACC AGGGAAGACAAGGCAAAACCATCTTCACTCTAACGCTGACTGAGGACCTAAGCTTGGACTTTACCCTCTGAGCTTGGGAC CCATGGAGTTTAGGGAGAACAGATATATTATTGCAAGTTCTGCGTACAATAGACCAAATAGTCGGACCCGCACATGCAGG AGTTCTGTGCACCGGTCTGCCCCTTGTGTGTAACTGCTTTTATGGTGATCAGGTGTTATGTCCATGGTAGTCAAATCCCG ATTTTAATCCCTTAATCCTACGCTTAAGTGATTTCAATGCGCTTGGGCGATTAAAATCTGTCGCATATACCTTTTCTGGC TAAATCTGTCCTTACACGATTAAACCGCATAATAGCACTTAATCATGATTATGTGATTAAGGTTGGTCCATGTGACATGG GTTTGGCCCGCTTTCTTTACGTGACCTGTTTTGCAATACCCCTAATTTTTTTAGCAGTTGAGCCCCCTTATCTCCCCCAC TGCACCGGGACGGTGCTCTGACACCTTCGACGGGCTCCTCCACCGGTGATGAGAGGCTGGGAATGGGGTTGATAAGTCAA GTGGTGGTACTGTGACTGTGGTTGATAAGTCAAGTGGTGGTACTGTGACTGGCTGGTTACGAGGCTGTTTTAGTATGGCA TACCTATGACTTCTGAGCTATGTTTTATGACTTGAGTTATGAGTACAACTTTATTTAAGCATTTCTAGTTATTTTAAGTG TTCTTTTTGTTATTTATGCCATTTTATATGCATATATATGATATATGAATTTATATGCATGTATACATATATATGACTTT TGTTAAATCTTACGAATAAGCTATTTACGATTAACACCCCCTCCCTGATTAAAGGCGTAATCCTAATTTTGACTACCTTG GTTAGATCAGCATTAGAAAATAGACGGTGGAAACTGAACTGGTTGAAAATTCGGGCCGCATTGTGTGGAAGAAATGGAGG AAAATAGATCCACCTTTACGCGTGTGCTTTAAACCAGATATTGGAATACTTTCCATCCTTTCAAGTATCATAGAGCGAAA GTGAAATGCTTCACATTTTCCCTTCCCTATTCTTTATCTTACCGTGAAGCATTCTGTTTGGAAAATCTTCAATATATAAC ATTGTGGTTGACTTTTTCCTTTAATTAAATCATCGATGTATGAGCTGACTTCAACACTTCTCAAACTAGGTTTAACTGCA TAGATTTGGATGGAAATGGAGTTCTGACAAGGAACGAACTGCAATTTTTTTATGAGGAGCAATTGCATCGGATGGAGTGC ATGGCCCAAGAGCCTGTGCTTTTTGAGGACATACTGTGCCAGATGATTGACATGATTGGGCCTGAGGTTTTCCTTTCCAT CTTTTTCTTGAATGATTGTTTGATCTTCTTGGTTTGTTGTGAAGCAACATTGGAAAAATGAGTACAGATCTATTTAGCAG TTCATAAAGTGCCGTCTCTATCTACGGTTGATATCATGTCATTACTGATTTATTATGAGACATTTTGAAATTAAAATTCC TTGCTTTATAGGATGAAAACTTCATAACTCTGCGTGACCTAAAAGGCGGTAAACTTTCAGGAAGTGTCTTCAACATCCTG TTCAATCTGAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATTCGTCAGGTGAATAAAATATTTGATAAAAG TTATTGAATTGTTGAGTTAGTATGGTTAGCCATTGTTTGTGACTTCTATGGTATAATTGGTACACGTCTTTTTTAAATAG GAACGTGAGAATCCAACATTGACAGAGTGGGACCGATTTGCTCATAGAGAATACATTAGGCTTTCAATGGAAGAAGACGT AGAAGATGTCTCTAACGGAAGTGCAGAAGTCTGGGATGAATCACTAGAGTCTCCCTTCTGA
CDS sequence (LotjaGi5g1v0207900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTCGTCACTGATGCGGCGTCGTTGGACGTCGAATTGTTGCAGCTGCCGGAGTTTTCAGCTTTGGCTCTCAAGTC TAACTTCAATTTCGTTGAGAAGCTTTTTGAGGAGTGGTTGTCGCTTCCTGAAAGCAATCGACTTGTAACATCGTTGTTGA ATGACGCTAAGTCAGGTGCTCCCTTGAATGTCCCAGGGAATTGCTCTAGTCCAAATGCTGCGAGCAGTCCTTTGCCTTCC ATGTTTCCGGCTGGCACTGCTCCACCTCTTTCTCCAAGAAGTACATCTGGTTCCCCTCGCATTGTGAAACAAAGAGCTCC TTCAAATTTGGGCTCTCCTTTAAAAGTTGTCAGTGAGCCAATTAAAGAAGTGATACCTCAGTTCTACTTTCAACATGGAT GTCCACCTCCAAATGAATTGAAAGAACAATGTTTGTTCAGAATTGATCAGTTATTTCATGATCACTTGGATGGCCTGCAG GTGCATGAATTCAAGTCAATCACTAAGGAAGTATGCAAGCTGCCATCATTTTTTTCCACTTCTCTTTTCAAAAAGATCGA CAATGGAACTGGTATTGTGACGAGGAAAGCATTTATTGATTATTGGATTAATGGCAACATGTTGATGAAGGATACAGCTA CTCAAATATACACAATATTAAAGCAACCACAACTGAATTACCTTACACAGGATGATTTCAAACCTGTCCTACGTGAGCTT TTAGCAACTCATCCAGGGCTGGAGTTCCTGCAGAGCACACCTGAGTTTCAAGAGAGATATGGTTTGTAA
Protein sequence (LotjaGi5g1v0207900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVVTDAASLDVELLQLPEFSALALKSNFNFVEKLFEEWLSLPESNRLVTSLLNDAKSGAPLNVPGNCSSPNAASSPLPS MFPAGTAPPLSPRSTSGSPRIVKQRAPSNLGSPLKVVSEPIKEVIPQFYFQHGCPPPNELKEQCLFRIDQLFHDHLDGLQ VHEFKSITKEVCKLPSFFSTSLFKKIDNGTGIVTRKAFIDYWINGNMLMKDTATQIYTILKQPQLNYLTQDDFKPVLREL LATHPGLEFLQSTPEFQERYGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 260 | 259 | 3.1E-120 | – | |
| PANTHER | 2 | 260 | 259 | 3.1E-120 | – | |
| MobiDBLite | 64 | 79 | 16 | - | – | |
| MobiDBLite | 64 | 105 | 42 | - | – | |
| MobiDBLite | 89 | 105 | 17 | - | – | |
| Gene3D | 121 | 221 | 101 | 4.9E-11 | – | |
| SUPERFAMILY | 135 | 252 | 118 | 1.08E-7 | ||
| Pfam | 211 | 260 | 50 | 2.2E-18 | ||
| Gene3D | 222 | 261 | 40 | 1.1E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0207900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…