Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0209900 |
| Transcript ID | LotjaGi5g1v0209900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | vacuolar sorting-associated protein (DUF946); TAIR: AT3G04350.1 vacuolar sorting-associated protein (DUF946); Swiss-Prot: sp|P53285|VPS62_YEAST Vacuolar protein sorting-associated protein 62; TrEMBL-Plants: tr|A0A151U5H2|A0A151U5H2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0209900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51314307..51318706) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCTATTGTGAAAAAGAAAGGAAAGATCAAAGATGAATGAAACTGAAGTTTTAAAGTAAAAGGTAACCTCATATTAAT CAATATATAATAAAACTCAAACAAATTAAATTAAATTAAAGTTAAAGCAGAGCACCACCACCACCACTGCAAAATTCCAA ACAGCCTTGTTGAAGAGAAGAAGAGAGAAGAGGAAGGAGAAAGTTGAAGACTTTTTCCCTTGTTTTTGCTGAAACCAACC TCTCTCTTCTTCTCTCTCTTCTGGGTCTCCGTTCAACCCAACAAATTCAACAAACCACCACAGGGACTCTCAAGGCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGGTGCTTTGTGGGGATGTTTGGGTGTTGGTGTTCTTGCTGGGAGT GGGACAGTGTCCCTGAATTCTATGATCCTGACACACCACCCTTTTCTCTGCCTTCACCTCTTCCACACTGGCCACAAGGT ATGTTCATGTTCTAAAACATTGAAATTTCAAACAAGCTTTTGGTTTCTTTTCTGGGTTGTTAATCAATTGGTTTCCCTTA ACAAGAATACAAATAGAATTGGATTGTGTGCAAATAGAGACCTTTGTGTAGTTTTATTGATCAAATCAAAGGTGAAAATA GACTACTTTTGTACCTATAGATATATTGTCTTTGAAAAGCTTTTTTATTCTATTGATTTTTCAGAGATATTCATGAACCA TAGTTTCAGGCTGGTGGAATTTTTTTAACTGGGGGGTAGGTGCAAAATTGGGGTAAACTGGATAAATTATTGGATAAGAT TTGAGATTTTTTACTTTTTATGTGTACTTACTTACCTTATGTGGTTCATTCTATGATATGTTTTGGAAACAATTATTTAC TTGCAATTAATGTTAGTGAATTTACATTTTCTGGTTATTGATTACAGTCTTTATTATTTTAATTCTAAGGTTGTTGAGAA AAGCTACCTTCAAACTGTGGAAGTCTGGCTGCTATGTAGAAAACAAAAAAAAGAAGAGAGTTCTTGTACTGTTTCTTATT TTGATTTGATTGAATGAGTGGGCATTAGCATTAATCAACAATGCTCTTCCCTGAAAGTTGTTTTGATTATTTCCACGGTT TTCTCATTTACCATGCATCATCAGTTATTGTTATGCCTCTCCACAGGTTGTTAAAAGAACTTGTTTTTTTAGAGGAAAAA ACAATGACATTACCATTTTAACTCTGCAATCAAAATTTCTTACCTTGACTTCGCACTACAAATGTCTTGTACTCCAATCA ATATTTCTTATCTTGACTTCAAAGACAATATGTCATGCCAACTATTGTGCTGCTTTTACATCTGATGCCGTTGATGGATG TTTGTTTGTATTTGAGAGTTGAGCAATGCTAATTCATCACTGCAGAACTTTGCGTAGAACTTGCAGTTATTGAAACTCTC TACCATAAAACGCTAGCCTTAATATGTACTTTTGCTTATTATGCATCAAGTAAGCATCTTTACTGCATACTTGGAGAGTG TAATGTATTACGGCTGTCTTACTCTTACTACAGACATCAAAATTGAATTCTTGTGATCAATAGTCTTTTAATTTTGTTTG ATTCTATTTGATATTCTGTGGCTGTGATGTCAAATGTTTGTGGCTTAATTATGTTATTTATCTTATCTAAGCCTTTGAAC CATCTGATCAGGTAGTGGTTTCGCGAGCGGAAGAATATGCCTTGGAGAAATCGAAGTTTCAAAAGTGAACAAGTTTGAGA GAGTTTGGACTTCCACACATTTGCATGGAAAACCACAGGGTTTCGCATTTTATAGACCTTTGGAGGTTCCTGATGGTTTT CTCTGCCTTGGTCATTACTGCCAGTCCAATGAACAGCCATTTAGAGGATATGTTCTTGTGGCCCGTGAAACTCCTACTGA ACCTGAACCTGATTGTTCCGATGGCACTGTGTTAAAATCTCCAGCTCTAGAAAAGCCACTTAACTATTCATTAATTTGGA GCTTGGATTCACATGATGATTGTGCTTACTTTTGGTTACCAAACCCTCCAATGGGCTACAAAGCCATGGGCATAGTAGTT ACTAGCAATCCAAATGAACCAGAAGTTGATGAAGTTCGATGTGTTCGAGCAGATCTAACACAAACTTGTGAGACTTCTGA TCTATTACTTTCAATAAAGTCAAAATATTCCAAAAATCCATTCCAGGTTTGGAAGACACAACCCTGTGATAGAGGTATGA TGGCTAGAGGCGTATCTGTTGGGACATTCTTTTGTGGCACCTATTTTGATTCTGAACAAGTGACGGATATTGCGTGCTTG AAGAATCTTGATTCTTCCCTGCATGCCATGCCAAATTTGAACCAGATTCATGCACTTATCGAGCATTACGGGCCCACTGT GTATTTTCATCCTGATGAGATATACTTGCCGTCGTCAGTGCAATGGTTTTTTAAGAATGGAGCAGTTTTGTGTTCAGCAG GCAGTGAGAAGGGTAAATGTATAGATTGCGAGGGAACGGTTTTACCTATTGGAGGAACAAATGATGGTGCCTTTTGGATC GATTTGCCTAGCGATGAGGATGCAAAAAATAATCTAAAGAAGGGAAACATAGAGAGTGCAAAACTATATGTTCATGTCAA ACCAGCATTGGGAGGAGCCTTTACTGATATTGCGATGTGGGTTTTTTGCCCCTTCAATGGACCTGCCACACTTAAAGTTT CATTGATGAACATTGAGATGAATAAGATCGGTGAACATGTGAGTGATTGGGAGCACTTCACCCTTCGCGTAAGCAACTTC TCCGGTGAGCTTTGGTCTGTGTTTTTCTCTGAGCATAGCGGCGGAAAATGGATAGATGCATTTGATTTGGAGTTTATTAA GGGGAACAAACCAATTGTTTATTCATCAAAACATGGCCATGCTAGCTACCCTCATGCCGGGACATACCTTCAGGGATCAT CCAAATTTGGAATAGGGGTACGCAACGACGCAGCTCGAAGTAAATTTATTGTGGATTCAAGCATTAAATATCAGATTGTT GCGGCTGAGTATCTTGGTGTTGGAGTTGTTACTGAACCATGTTGGTTGCAGTATATGAGAGAGTGGGGTCCTACCATTGT ATATGATTCACGTTCTGAAATAGAGAAGATAATAGACCTGCTTCCAGTATTTGTCAGATTTTCCGTGGAGAACTTGATTG AATTGTTTCCTACAGAGCTTTATGGGGAGGAGGGGCCAACAGGTCCCAAGGAGAAGGACAATTGGCTAGGAGATGAGTAT TGCTAGTTCTGCTTTAATGCTACCAGCTTTGGCTGTTTTACTCTGCTACTAGCCATGTCTTGGAAGCTCTTGACCTGGTT TCTGTGTCTGGGATCGGGATCCTCTGAGGTGGAAACTTCACATGACACTATCATGTTGAAATTGTGTTTATATCTCTCTT CATAAGTATTAAATAGGTGGAACCTTCTGAATATTTATGATGAGAAAGATAGACCAGTGTTTCACTTGATATTGTTAAGT GAAATGAGAAGATCTTAATCCCTGTGTCACTGAGGGCGAGGTGAAGGGGACCAAGTGATCATCATCTTCATGAATCAACT GTATAGGAGGTGTACCTCACACGGTAGCAACTTGTGTCATTCTTCTTGGAGGCTTGAAAAACAATGTCTGATTTTCGAGT TTCTTAAAAAGAATATGTTATATATACAACTATAGAAAGAACTACGAACGTGTACAAGGTAGGGTTATTGTTTGTATATA CATTTCTGGTTTCATTGTAAGATAATCTTGTTGCCAGTGCTTGGTGGGAGACATAAAAGTTTTGATTAGTATTCCAAGTA TTGCTGGTCATGGAGCAGGAATGTGTATGATTCAGTGTGGTTATATCAACTTGCATTTGTTTGCTTGGAAACTTTTCTGG ATATGTTCTGTCTCACTAACTTTTCAACATATGATCTGGTGAAAGGAATGCAATAAGGCCATAACTTCAAAACACAACAA TAACCGTAAAACAGGACTATCTGAAGATTTGTGGATGAAATGAGGCTCTATTGCAATAATAAGTCACCACTCAACATCGC TCATAATCTAGTACATCATGATATAATTAAGCATATTGAAATAGATAGGCACTTCAGTCAAGACACACTAGAGAGTGGCT TGATATGTACTTCATACATGTCCTCTCAAAGCTAACTGGAAGACATTTTCACTATAGGCCTAATTAGCCACAATTGTATA GTTTCATTTTTGGTCTGTATGGTGGTAATTTCTAGTTTATCTTTTATTTACTTTTTGTATTTAAACTCTTATATGAGAGA ATCATTATTTTATTCCTATTTGCTAAATTAGTCTGACTTATGTATATATTCACAGTAAATAACTTAGATTTAAAATTATG
CDS sequence (LotjaGi5g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGGTGTTGGTGTTCTTGCTGGGAGTGGGACAGTGTCCCTGAATTCTATGATCCTGACACACCACCCTTTTCTCT GCCTTCACCTCTTCCACACTGGCCACAAGGTAGTGGTTTCGCGAGCGGAAGAATATGCCTTGGAGAAATCGAAGTTTCAA AAGTGAACAAGTTTGAGAGAGTTTGGACTTCCACACATTTGCATGGAAAACCACAGGGTTTCGCATTTTATAGACCTTTG GAGGTTCCTGATGGTTTTCTCTGCCTTGGTCATTACTGCCAGTCCAATGAACAGCCATTTAGAGGATATGTTCTTGTGGC CCGTGAAACTCCTACTGAACCTGAACCTGATTGTTCCGATGGCACTGTGTTAAAATCTCCAGCTCTAGAAAAGCCACTTA ACTATTCATTAATTTGGAGCTTGGATTCACATGATGATTGTGCTTACTTTTGGTTACCAAACCCTCCAATGGGCTACAAA GCCATGGGCATAGTAGTTACTAGCAATCCAAATGAACCAGAAGTTGATGAAGTTCGATGTGTTCGAGCAGATCTAACACA AACTTGTGAGACTTCTGATCTATTACTTTCAATAAAGTCAAAATATTCCAAAAATCCATTCCAGGTTTGGAAGACACAAC CCTGTGATAGAGGTATGATGGCTAGAGGCGTATCTGTTGGGACATTCTTTTGTGGCACCTATTTTGATTCTGAACAAGTG ACGGATATTGCGTGCTTGAAGAATCTTGATTCTTCCCTGCATGCCATGCCAAATTTGAACCAGATTCATGCACTTATCGA GCATTACGGGCCCACTGTGTATTTTCATCCTGATGAGATATACTTGCCGTCGTCAGTGCAATGGTTTTTTAAGAATGGAG CAGTTTTGTGTTCAGCAGGCAGTGAGAAGGGTAAATGTATAGATTGCGAGGGAACGGTTTTACCTATTGGAGGAACAAAT GATGGTGCCTTTTGGATCGATTTGCCTAGCGATGAGGATGCAAAAAATAATCTAAAGAAGGGAAACATAGAGAGTGCAAA ACTATATGTTCATGTCAAACCAGCATTGGGAGGAGCCTTTACTGATATTGCGATGTGGGTTTTTTGCCCCTTCAATGGAC CTGCCACACTTAAAGTTTCATTGATGAACATTGAGATGAATAAGATCGGTGAACATGTGAGTGATTGGGAGCACTTCACC CTTCGCGTAAGCAACTTCTCCGGTGAGCTTTGGTCTGTGTTTTTCTCTGAGCATAGCGGCGGAAAATGGATAGATGCATT TGATTTGGAGTTTATTAAGGGGAACAAACCAATTGTTTATTCATCAAAACATGGCCATGCTAGCTACCCTCATGCCGGGA CATACCTTCAGGGATCATCCAAATTTGGAATAGGGGTACGCAACGACGCAGCTCGAAGTAAATTTATTGTGGATTCAAGC ATTAAATATCAGATTGTTGCGGCTGAGTATCTTGGTGTTGGAGTTGTTACTGAACCATGTTGGTTGCAGTATATGAGAGA GTGGGGTCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACCTGCTTCCAGTATTTGTCAGATTTT CCGTGGAGAACTTGATTGAATTGTTTCCTACAGAGCTTTATGGGGAGGAGGGGCCAACAGGTCCCAAGGAGAAGGACAAT TGGCTAGGAGATGAGTATTGCTAG
Protein sequence (LotjaGi5g1v0209900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGCWCSCWEWDSVPEFYDPDTPPFSLPSPLPHWPQGSGFASGRICLGEIEVSKVNKFERVWTSTHLHGKPQGFAFYRPL EVPDGFLCLGHYCQSNEQPFRGYVLVARETPTEPEPDCSDGTVLKSPALEKPLNYSLIWSLDSHDDCAYFWLPNPPMGYK AMGIVVTSNPNEPEVDEVRCVRADLTQTCETSDLLLSIKSKYSKNPFQVWKTQPCDRGMMARGVSVGTFFCGTYFDSEQV TDIACLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEIYLPSSVQWFFKNGAVLCSAGSEKGKCIDCEGTVLPIGGTN DGAFWIDLPSDEDAKNNLKKGNIESAKLYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVSDWEHFT LRVSNFSGELWSVFFSEHSGGKWIDAFDLEFIKGNKPIVYSSKHGHASYPHAGTYLQGSSKFGIGVRNDAARSKFIVDSS IKYQIVAAEYLGVGVVTEPCWLQYMREWGPTIVYDSRSEIEKIIDLLPVFVRFSVENLIELFPTELYGEEGPTGPKEKDN WLGDEYC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 24 | 565 | 542 | 2.6E-267 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0209900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…