Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0211800 |
| Transcript ID | LotjaGi5g1v0211800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1685 family protein; TAIR: AT1G08790.1 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1, putative (DUF1685); Swiss-Prot: sp|Q61493|REV3L_MOUSE DNA polymerase zeta catalytic subunit; TrEMBL-Plants: tr|I1LBM7|I1LBM7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51642531..51644873) extracted from Lotus japonicus Gifu genome v1.2.
ATAATCGCCACCTTTCCTCTTAATCTTTTCACCTTCGAATTTATTCACATTCCACATAATTTTTCCCACCGCGGCGAGGC AGAGCAAGGCTGTCCCCTTGCAGCCTCCCGCCACCACCGCCACCGCAACAACAACCGCCGCGACTATCAAATAGTAATAG TATTTTTTTTTTAAATTCAATGGAGGAGCAGAAATGTGAGGCAGCTGCCGCCGTGTGGTCCTCTTCTTCTTCGTCTTCGC CGATTCCGAGCGAGTCGGAGGAGGAGCTGCAGCACATGGAGTTGGTACCGGTAGGGTGGAAGAACAAGAAGCGGCTGTCC AAGCAGCTATCGCTGTGTGAGAGGACGAGAGACATTGCGTGGGAGAGGCGGCGCCGGCAAGAGAGGAGGAGGAGCTCGGT GCTTCAGGATTGTGTTTGTGATGATCTCACCGATGAGGACCTGCATGAGCTTAAAGGGTGTATAGAGCTTGGGTTTGGAT TCAATGAGGAAGATGGACAGAGGTTGTGTAACACGTTGCCAGCGCTTGACCTATATTTCGCGGTGAACCGGAGGTTGTCG CCGAGCCCAGTCTCCACCCCTCAAAGCCGTGGTTCTTCCCTTGGTGCCCGTTCATCATCCTTTGGAAGCCCCAGGAGTGA TGATTCCTGGAAGATTTGTAGCCCAGGTATAGTGGCATTGCATTTTTTTTCCCAAAACAAACAATACTAGCTTCATGTGT TTCGGGTCATGTTTAGAAACTCGGTCGAGAAAACCACTATAAAAAAAAATTAGAATAGGCAGCAGCAAAAATTAAGGTAA ATTGCACCTGTCCAACATGGTTTCGGTCTCATGTGGTATTCAAATAAGTTTTCAAACATGCAAACTAAGGCAATATTTAA TTTGGATCATGATTTTGAAAATTTGATTCAACGGAAAAAGTTGGCGACCCAAATATTTTTGTTATTCTTCAACTTATTTG GAGACATGTTTGACAAACTTATTAAAATTTTGACTTGATTTGGCCAACCATGTTTGTTAGAGAAACCCAAATTATTCACC TCAAACACTTGTTTTGGAGGTGTAAGCTGTAATGTAAGAAATTACCAAAAGTGTCTTTGACCCCAGAATCAATTCTGAGA GGATGAAATCAATTTTGGGTGACATTGTAGATTTTGGGTCAATTTCAATCCTAAAATCAATTTTGCTAGTAGTTAGAAAA CCTTCAGTCATAAATTACCTGGGAAACCTTACAACTCAATAACTTAATTTCTTCATACTAACAAAATAGTATTTTTCATT AATGTTTTTAAACATTTCATTTCACATCCTACTCTTGGCAGAATCAATTATGATTTCTGGTTTCCAAATACACGCCAAGT CGCCAAATCTTTTGTTTTTTGGGTTAACAAGGTTTGTGTTATAGTTTGCTGATGTGGGTGTGTTTGTGCAATGCAGGGGA TGACCCTGAACTGGTGAAGACCAAGTTAAGGCATTGGGCTCAAGCCGTTGCTTGTTCTGTGATGCAATCTTCTTCTTGAA GTTGTTGGATGTTGTTCTGTACAGAGGGATGTTAATTCTAGAGATGCATGGACAAAGAGTAAGAAAGAAAGACCGGAAAA ATCAAAGGAAAAAGAGGAGCTAGCTCGGGTGTAGAGTTTACTGATCATTTAACCAAACCAGATTCCTCCTTCAGGGGATT TATTTGTTGGAGCTTGAAGAATTCATTCAATGCTAACAACATTAACCGGTTCGAAGATACTTAACGGTCTAACTAACCAA TCACCACCGCAGTTTTTCTTCTTTGCCGTTTCTCTTGCTTGCTTGCGCATAGTTTCAATCTCAAACTGTCTTTTGCAGGG TCTATTCATCATCATATAGAAATTTTTGAGTCACATGGTAAAATAGTGCCATTACCATAGCATGTTTCTGTCTCTTTTTA CCATGTCGAAGGTTAAATTCAAAGGCATTAATCAATGTAATGTCAGAGATCACCATTCATGAGTAGATAAGCTCCACCAC ACCTCTTTAGCATAGGACTGGCATGATTTGATTGTAGAAGATACACAGAGAAGTAAATGTGCAAAATGTATGTTTCATTC TGATTCTGATGAACTCTTCCAAATCAAATCTCGTGGTCATTTTATCTGGTTTCTTTTTGTCTCATTGGTCAATCAATAGA TGAATGTGAATCTTGGATCATTTGAATGCAACCTAAATACCAATTAAAATCATATTTACTTAATAGGTGTTTGACTTGTT ATGTTTATATGACTTCTGAGTTTTGGTTAAATATGTTTTTCCCCTAAAAATTTAGATTTTGAGTTTAGTTCATCGGCCAT GTAAATTTGCATTTTGGGGCATT
CDS sequence (LotjaGi5g1v0211800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGCAGAAATGTGAGGCAGCTGCCGCCGTGTGGTCCTCTTCTTCTTCGTCTTCGCCGATTCCGAGCGAGTCGGA GGAGGAGCTGCAGCACATGGAGTTGGTACCGGTAGGGTGGAAGAACAAGAAGCGGCTGTCCAAGCAGCTATCGCTGTGTG AGAGGACGAGAGACATTGCGTGGGAGAGGCGGCGCCGGCAAGAGAGGAGGAGGAGCTCGGTGCTTCAGGATTGTGTTTGT GATGATCTCACCGATGAGGACCTGCATGAGCTTAAAGGGTGTATAGAGCTTGGGTTTGGATTCAATGAGGAAGATGGACA GAGGTTGTGTAACACGTTGCCAGCGCTTGACCTATATTTCGCGGTGAACCGGAGGTTGTCGCCGAGCCCAGTCTCCACCC CTCAAAGCCGTGGTTCTTCCCTTGGTGCCCGTTCATCATCCTTTGGAAGCCCCAGGAGTGATGATTCCTGGAAGATTTGT AGCCCAGGGGATGACCCTGAACTGGTGAAGACCAAGTTAAGGCATTGGGCTCAAGCCGTTGCTTGTTCTGTGATGCAATC TTCTTCTTGA
Protein sequence (LotjaGi5g1v0211800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEQKCEAAAAVWSSSSSSSPIPSESEEELQHMELVPVGWKNKKRLSKQLSLCERTRDIAWERRRRQERRRSSVLQDCVC DDLTDEDLHELKGCIELGFGFNEEDGQRLCNTLPALDLYFAVNRRLSPSPVSTPQSRGSSLGARSSSFGSPRSDDSWKIC SPGDDPELVKTKLRHWAQAVACSVMQSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 10 | 26 | 17 | - | – | |
| PANTHER | 11 | 187 | 177 | 7.0E-80 | – | |
| PANTHER | 11 | 187 | 177 | 7.0E-80 | – | |
| Pfam | 83 | 137 | 55 | 8.2E-26 | ||
| MobiDBLite | 128 | 161 | 34 | - | – | |
| MobiDBLite | 128 | 154 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0211800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…