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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0213300 |
| Transcript ID | LotjaGi5g1v0213300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PITH domain-containing protein; TAIR: AT3G04780.1 PITH domain protein (DUF1000); Swiss-Prot: sp|Q9SQZ9|PITH1_ARATH PITH domain-containing protein At3g04780; TrEMBL-Plants: tr|I3SWY3|I3SWY3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0213300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51867279..51871670) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATTGATTTATTGCAACTTGCAAACTGTGGTATCTAACGTCGTCGTTTTACCTTGGAGGTTTGGTTTTTTCAGCGCA ACCTTAGATTCCGAGGTGGGTTTGTGTTTGGAACATTGATATTTCATTCATTCTCTCTCTTTTCTTCTCGCAAATCGCAG TCGCAGCAATGTCCGGTGAATCTGCCAGCGCTATTCAAAAGGGTCAAGTAAGATTCAAACTTCATCTTTCATCATACAAT ACATACTCTTTTCGATTATTGAATTTGATTTTTGTGATCAGGTTGATCTCTTAGACTTCATAGACTGGTCTAGTGTTGAA TGCCTCAATCAGAGTTCCACCCACTCTCTCCCCAATGCTATCAAACAGGTTCTTTTTTATTTCAATTTTCATTTTTTTTC AAAAGGCTTTTTTCTTTTCTTCTAGTAATAGCTAGCTGTGTAATTGTATTTATTTATTATTTAATTGATAAACTACATCA GGGGTATAGAGAAGATGATGGTTTGCATCTGGAGAGTGATGCTGATGAGCAGCTTTTGCTCTATATTCCTTTCACTCAAG TCATTAAACTCTCTGCCATTCTTATCAAAGGCCCTGAAGAAGAAGGTAACACCAATCACCTTCATATTTTTATAACTATA ACTTTTTTCCCATTAGAGTCACAGTGTCAGTGTCAGTTATGAGTCTTGTAAATTGTAAGAGATTGCACAAGTAAGATGCC TGCCTGTGTACATACATCTCTCCTTTTGTTTGCATCTTGGTGCCTGAATTTAGAGTTTAGATGCTAAACATGATTGTTCA GTTTTTGATATTGTAGTCTTTTAGATAAGAAAGGAGAGAGAAGAGAATGAGACATATACTGAATATGATATGATATATAT GATACAAAAGACTAAGCGTGGACGCTTACTTATACTAATGCTAGGCTCCGAACCCTAATCAAATAAGCAACAAATCATGA TGGTTAATAGACGCCTAATTGAATAAGGAAATATATCATGCAATATAAAGAAACTGATTCTAAGAGATCATCCAAGATGC CCTAAGTCAAGATATTGTAAGTTTTTTCCATATAATCTAACACTCCCCTTCAAGCTAAAGCTTACTGAGTTTGATCTTGT TACAAATATATTCTTTAGAAAATATATAATTAATAGATTGTAGACCTACGGGATCTGGATGCTTTCCTTGGGACCTCTGC GAGGCCATACTGCATCTAGGATAGCCATGGGGCTTTCTTGAAATCTCTAGGACTACTGCTGGAATAGTGGCAAGGTCAGG CTGTTTTCTTTGGGATTGTCATAGGGGTAGGATGGTTTCACTGGAATAGCCATGGGAAGGGGCCAGCTTGTGAGACAAAA GGCTCCAAACAATCATTGGAAATGCCAAAGGGCACGCCTGAGCAAGTGTTGTTGCTAGGAGACACATTTAAACAGAGGTT GAACTAAAGAAAGAAGTGCACATCCTTATAGAGGACAGTGGTGTAACTCAAATGGGGCCAATAGGTCACAATGGGTATAG CCAATCGGAAGGCAGAAAAAACACTGAAACAGTACATGGAAGATGTGGTTTTTAATGAGAAGCATCCAAACATTTCAGAT CAAAAAACCAAGGGCAGCCCCACGGAGGGCACTTGTAGGCAACCTAGGAGGTGAAGTGGTGGTCAAAGATGTGGTCAAGC GAGCCACTACCCATGGTGGAGGTGGTGCACGCAGGATGAGTAGCACCTTGAATAAAATTTCATCAGAAAGAGCGTGTGTG TGCACATGGCTTGTTGGCTCTTATGAAAGTTTCAGGAGTATGTAGATTGGCTCGTGACAAGTCTGATGTTGGTGGATTCG GTTGAAAAAAATTCCAATATTGGTGGCATTGGCAGGAAAACTGTCTGAATAAAGGACTACATGCTAGAGGATAGAGGAAA CTAGAGATGCCACAGCGGCAACTATGGTCGAAGAGATTCAAGCCGGAGAATTTCACGGTGACTAAGGCTCGGCAAAGGTG TCTTGATGGAGGTGACAAAAAAAGTCACCAATAAAGAGAGAACTTGGGAGAGAAACAATGATAGGAATTTATGGATGGCT GACAAGAAGAAAATGAATCTAGAGATACTGTCATTGTTACAATTAGGGAACTTGGCAGCAAAACAGTAGTGGGACAGTTC GTGGAGGATTGTATTGCTCTGATATCATGTTGAAGCTATAAGGTTTTAGTTAACGGAGGAGAGAAGAGAAAGAAACAATT TTTTTACTATTATGATATGATATATATATATATATATATGATAGAAAATACAAAACATTAGCCACTACTTATAATAACTC TAGGCTCTTTATCCTAATTGATTAAGGAAACAAATCATGGATATAAAGAATAAGAGATCATCTAAGATGACATCAAGATG TTCTAAGATATTTTAATTTAATTTAATTCAGTTTATAACTTTATATATATTATCTGTACTAATTTGCTACTGCACATTTT TTTTCCCCTTGGTGACATGATTGTAAATTGTAATTGGATTTCTATATTGTATTTTAGGCCCCAAGACTGTGAAGCTCTTT TCTAACAAGGAACACATGGGATTTAGGTATATTTTTGCCAAAATCGTTTGTTTGTCATAGCACTTGTGTCTTATACTCTT ATGATTTAATTAGTTGCTGATTGTTGATTCATGAAATTACAGTAATGTCAATGACTTTCCTCCAAGTGATGTGGCAGATT TGTCCCCAGATAACCTCAAGGTAGTTATTATATGACTCTTCTCCCAAGTCCACATGATGATATCCTTTTCTAATATCTTT GGAATAACTTCAATTACAATTTTCTTATTTGTTTTCTGACAGGGGAAACCGGTACCTCTAAAGTATGTCAAATTCCAAAA TGTTCGTAGGTATGTTGTTTTTGGTTGTTCCTCATTTCTGAAGAAGCCTTCATTTTTATCATTCTCTTGGAGGGAATAGC TGCTAATTTGTGTTAATTACTTGAACAGCTTGACAATTTTTATTGAGGATAACCAGACAGGTTCTGAGATCACAAAAGTT CAGAAGATTACGCTGTATGGTACAACGTAAGTTTCTACCACTTTAAGTTTCTTTTGCTGTGAAAGACAGAATTAGCACCC CCGTTACGTTTTGCAGTTTATTTGTTTGTTCCCCTTATTTTGTCTGTCATTTCTCTATGTTTATTCAACCAATTAATGAA GGAGTGCACACACAATATAAGGTAGGATAAGTTATGAAAGAATGCATTAGAGAGAAAATCAGGGATTACATCTTGTGGAT TAGATGGTAAAATCTCATCTTAGATCGTTTAGATATGTGTAGAGAAGTTCTATAGAAGCTCCAGTAATGCAATGGTTAGA GGATAATGGAGATCTAGAAAAACTACAGGCCAAACTGTTAAGGAAGATTTTGATTTGAATGGTTTGTCATTTGAAATGAT TTACAATATGATATTATGATGTTGTTTGGTCCATATAGCTGACTTTATCTAGTGAAAAAAGGCTTTTGTTGCTGTTCTCG TTCATTGTTTGTTGGGCTATAGGATCCGGATATTCATTTTGTTTTTCTAGTTGCAATGTTATCTAGCAATTTTCTTTGTG ATATCACAAATGCCATTTGGAAATCTGTGCTTAATTGACTTGCATGTGAGCTGTACCTTTCTTTATTCTATGGGTAAGGG GGTGGTTGGGAAATACTAAAAAATGATAAAGGTTCATTCTTGCAAGTCTTCTTGTTTACATTCTTATGTACATGTTAAAG GCTTGTATTCTGGTTATATAAAGTACTAACACATAAATTTTCTGATATTTTACTTTTAATGCAGAGTTGAAACAACTGAC ATGAAGGGTTTGAAGAAAGTTGAGGATCATTGAGCCCCTGGAAAAAATATATTCAAATTTGCTCCATATTCACCCTTAGA AATTTTGATTGGAAATGTGATATTCAACTTTACGCATGATGGTTTATGACTTCCAATGTCTATCTCATTTCATAATTCAT ACAAGACTGACGCACGGTTTTTCTGTGTGGTTGTAACGACTTATTTGATAGGAGTTAATGTTCAAGCTTTATGGATGTCT ATTGTGCGTCTATTTATTGTTAAATCACGCATATCAAATGTAAAAAGAATTCACAAACTCAACAATTCAGAATTTGGGTG TTTGATTTTCTGTTGAACTCAACATAGATCTTTGCTCCTCTGTTTGTATCTTGAGAAATGTAAAATTATGTATGCATTGC TCTAATGTCAAAACAATTATGCACTTAGTTACACACCATAGCCAAAACCTTGAGTCCCATAAGCTGGTTGCACTAGTAAT ACTTCTTCACATTGTGTGCTTAGACGCAACAAATCTTCTATGTATCAACGAAAAGAATAGAATTCAAGTTTT
CDS sequence (LotjaGi5g1v0213300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGGTGAATCTGCCAGCGCTATTCAAAAGGGTCAAGTTGATCTCTTAGACTTCATAGACTGGTCTAGTGTTGAATG CCTCAATCAGAGTTCCACCCACTCTCTCCCCAATGCTATCAAACAGGGGTATAGAGAAGATGATGGTTTGCATCTGGAGA GTGATGCTGATGAGCAGCTTTTGCTCTATATTCCTTTCACTCAAGTCATTAAACTCTCTGCCATTCTTATCAAAGGCCCT GAAGAAGAAGGCCCCAAGACTGTGAAGCTCTTTTCTAACAAGGAACACATGGGATTTAGTAATGTCAATGACTTTCCTCC AAGTGATGTGGCAGATTTGTCCCCAGATAACCTCAAGGGGAAACCGGTACCTCTAAAGTATGTCAAATTCCAAAATGTTC GTAGCTTGACAATTTTTATTGAGGATAACCAGACAGGTTCTGAGATCACAAAAGTTCAGAAGATTACGCTGTATGGTACA ACAGTTGAAACAACTGACATGAAGGGTTTGAAGAAAGTTGAGGATCATTGA
Protein sequence (LotjaGi5g1v0213300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGESASAIQKGQVDLLDFIDWSSVECLNQSSTHSLPNAIKQGYREDDGLHLESDADEQLLLYIPFTQVIKLSAILIKGP EEEGPKTVKLFSNKEHMGFSNVNDFPPSDVADLSPDNLKGKPVPLKYVKFQNVRSLTIFIEDNQTGSEITKVQKITLYGT TVETTDMKGLKKVEDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 161 | 160 | 4.9E-64 | ||
| PANTHER | 5 | 176 | 172 | 1.2E-102 | – | |
| PANTHER | 5 | 176 | 172 | 1.2E-102 | – | |
| SUPERFAMILY | 5 | 160 | 156 | 7.06E-49 | ||
| ProSiteProfiles | 5 | 176 | 172 | 55.264 | ||
| Pfam | 16 | 160 | 145 | 1.0E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0213300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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