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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0213600 |
| Transcript ID | LotjaGi5g1v0213600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor; TAIR: AT5G28300.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2; TrEMBL-Plants: tr|V7BG15|V7BG15_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0213600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51907903..51910900) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGTGGTGGTGGGCTATCTTTTCCCTTCCATGCAAGGACAAATTCTTTGATAAATGTGAGAAAGAAAGAGAGAGAAAG ACAGAAATAGAGAGAGATTGGTGTTTTGTAAAGTTGCTTGTAGCATTTTGCTAATTTACAGTGTATGAGCAGCAAAGGAA TAAGGGAGTGAGAGAGGTAAGTAAAGAAGAAGAGAGAGTACTCCAACACACACTCACACACAAAACACAAACATGTTTGA TGGAGTCCCAGACCAGTTCCACCAATTCATAACACCAAGGACTTCACTTCCTCTTCACTTACCTTTCCCTCTCCATGCTT CTTCAGCCCCTAACAATAACACCACCTTCCCTTCTTTTGATCCTTACAACCCTTCTCATCATCAATTGCCATTCCAGCCC AATCTCTTGCACCACCCATTACACCACAAAGATGAAGAGAAGGAAGAAAACAACAACACAGTGCAGCCAAATCCAATGAA CTTTCAAATTGAAAGAGATCAAAGACAACAACTACCTCAGCTTCAGCAGCAGCAGGTTGATCCCTGGACAAATGATGAAG TTCTTGCTCTTTTAAGGATCAGATCTAGTATGGAGAGTTGGTTCCCAGAGTTCACTTGGGAACATGTCTCAAGGTATATA AACACTGCACACAACATATTTGAATTGCCTTCTCTGTCAATCAGAATCAATTCTGTCATCAGAATCAATTTTGAAAAACA GAAGCTCACTCACTTATGCTCCTCCTGATTCCGAAATTTTGGTTTCAGAATCAATTGTCGAATATTTCCAAACATATTGT TAATCACATATGATTACAATTCAATCTCTTTACATTGTTTCTATCAACATGTTTTCAAGCTAAACACTGAGTGTTTTTTT GAATGATCATGGCAACAAATTGACTATTAATAGAATAATTAATAACATGGAATTTGTGTTTGTAGTTTCTAATTATCAAG TGGTTTGTTTAATGCACATTGCACAGTGTATGCTAGCTAGTAGCTAGCTACCTCCATGTGGTAGACAAACGCACACGTGC ACCTTCACTTTGGCTCACACATCACTGACACCATCACACACACACACATCGAGAGAAAACAGGGCCGGCGAGGGAAGGGA CGAAAATTGAAGCCACCCCACTTTGTCAATTATTACATGTTGAGGAGGTGAATAAATGCTTCCACGTTGGTGTTCTTTTT GGATTTTTCCATGATAATTTTTTCTGGTGGTTGCAGGAAGCTAGCAGAAGTTGGATACAAGAGGAGTGCAGAGAAGTGCA AGGAGAAGTTTGAAGAAGAGACTAGATATTTCAACAACATTAATTACACCAACAAGAGTACTAATATTAATAATTATCGG TTTCTCACTGAGCTTGAAGAGCTTTATGAGGAGGTAGGGACTGAGAAGAGTACTACTCATCAGCAGCAGCAGCAACAACA AGACAAGATGGAGGAGCGTGCAGCATTGGATGATCAGGATCATCATGATGATTCGGTTGATCAAACAAAACAAAACAAGG CTCAAAGTGAGGAGGATCAAGAGAAAATCATGAAGGAGAGGAAGAGGAAGAGGGTTGATGATAGGTTTGAGGTGTTCAAG GGGTTTTGTGAGAGTGTTGTGAACAACATGATGGCTCGGCAGGAAGAGATGCACAGGAAAATCATTGAGGACATGGTGAG AAGAGATGAAGAGAAGTTCTCAAAAGAGGAAGCATGGAAGAAGCAAGAGATGGATAAGATGAACAAGGAGCTTGAGATGA TGGCACATGAGCAAGCTATTGCTGGTGATAGGCAAGCCAACATCATTCAATTCTTGAAGAATTTTGAGAAAAGTCAAAGA TTTGGAAGCGGAAATGGAAAAGAGAAACTCAAGGTAACAAGTGAAGATTCTTCCACATTGCTCTCACAAAACCCTAGTCC TTCACCTTCTTCTACTTTACCTACTTCATGTGCACTTGTAGTAGCTGAAAACCCTAGCTCAATTAATCTTGGTCAAGACA CATCATCACGAGTTGTTGTTCCTTTTGAGAACCCTAGTTCTTCTCTAAATCCACAAGAGACAAATTCTGTTTTGATTCAT AAAGGCTCCACTATAGAGAAAGATGATGTTGGGAGAAGGTGGCCAAAAGATGAGGTTTTGGCACTGATAAACCTAAGGTG CACTAGCAACAACAATGAGGACAAGGAAGGGAACAATAAGGCACCACTATGGGAGAGAATCTCACAAGGGATGTTAGAGT TGGGATACAAGAGGAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATAAC ACTAGTAAGAAGAGGTCCCTTGATTCAAGGACATGTCCCTACTTCCATCAACTCAGCAATCTGTATAATCAAGGGAAACT TGTTCCACAATCTGAAAGGCCAGAAGGGAAATTGAATAATGCGGCAGCAAATAATAATGCACCAGATCAAATTACCCCTC AAGCTGAGTCTTCTTCCACCCAAGTGGGGTCTGGTTGTGGTAATTTCACTGTGCAGCAGCAGCAACAGCAGAAGGTTGAT GATCATGAAGGTGAGAAAACTTCGATGCAGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAATTCATTATTGATTTGCC CATTTTCTATCACATAATAATAAGTACAACATCTTTTGTATCTTCTGTAATTTTTTCTTTTTCTTTCTTTTTACTTGATG GTGGCTATTTAATTTATAGCATATATAATTTGAATGTATAATTGAAAAACTTAGATTTGATGATCGCACCGACAGGTTGA GGAATGAGAACAATATTTATGTTCTAGTGTAAGTGCATTTCTATATTTGACCATGTTAAATTCATGAAATATGTTTTTAC TATTAACCTTCACTACATATTATTTATAACATGTTTTGATGTACTTAAGTTAATTAGCAGAGAAGTCTTTTTAAACATGT GAACTATATTTTTTCGGGTCCATGATATAGTAAAAGTC
CDS sequence (LotjaGi5g1v0213600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGATGGAGTCCCAGACCAGTTCCACCAATTCATAACACCAAGGACTTCACTTCCTCTTCACTTACCTTTCCCTCT CCATGCTTCTTCAGCCCCTAACAATAACACCACCTTCCCTTCTTTTGATCCTTACAACCCTTCTCATCATCAATTGCCAT TCCAGCCCAATCTCTTGCACCACCCATTACACCACAAAGATGAAGAGAAGGAAGAAAACAACAACACAGTGCAGCCAAAT CCAATGAACTTTCAAATTGAAAGAGATCAAAGACAACAACTACCTCAGCTTCAGCAGCAGCAGGTTGATCCCTGGACAAA TGATGAAGTTCTTGCTCTTTTAAGGATCAGATCTAGTATGGAGAGTTGGTTCCCAGAGTTCACTTGGGAACATGTCTCAA GGAAGCTAGCAGAAGTTGGATACAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGACTAGATATTTCAAC AACATTAATTACACCAACAAGAGTACTAATATTAATAATTATCGGTTTCTCACTGAGCTTGAAGAGCTTTATGAGGAGGT AGGGACTGAGAAGAGTACTACTCATCAGCAGCAGCAGCAACAACAAGACAAGATGGAGGAGCGTGCAGCATTGGATGATC AGGATCATCATGATGATTCGGTTGATCAAACAAAACAAAACAAGGCTCAAAGTGAGGAGGATCAAGAGAAAATCATGAAG GAGAGGAAGAGGAAGAGGGTTGATGATAGGTTTGAGGTGTTCAAGGGGTTTTGTGAGAGTGTTGTGAACAACATGATGGC TCGGCAGGAAGAGATGCACAGGAAAATCATTGAGGACATGGTGAGAAGAGATGAAGAGAAGTTCTCAAAAGAGGAAGCAT GGAAGAAGCAAGAGATGGATAAGATGAACAAGGAGCTTGAGATGATGGCACATGAGCAAGCTATTGCTGGTGATAGGCAA GCCAACATCATTCAATTCTTGAAGAATTTTGAGAAAAGTCAAAGATTTGGAAGCGGAAATGGAAAAGAGAAACTCAAGGT AACAAGTGAAGATTCTTCCACATTGCTCTCACAAAACCCTAGTCCTTCACCTTCTTCTACTTTACCTACTTCATGTGCAC TTGTAGTAGCTGAAAACCCTAGCTCAATTAATCTTGGTCAAGACACATCATCACGAGTTGTTGTTCCTTTTGAGAACCCT AGTTCTTCTCTAAATCCACAAGAGACAAATTCTGTTTTGATTCATAAAGGCTCCACTATAGAGAAAGATGATGTTGGGAG AAGGTGGCCAAAAGATGAGGTTTTGGCACTGATAAACCTAAGGTGCACTAGCAACAACAATGAGGACAAGGAAGGGAACA ATAAGGCACCACTATGGGAGAGAATCTCACAAGGGATGTTAGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGTAAAGAG AAATGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATAACACTAGTAAGAAGAGGTCCCTTGATTCAAGGACATG TCCCTACTTCCATCAACTCAGCAATCTGTATAATCAAGGGAAACTTGTTCCACAATCTGAAAGGCCAGAAGGGAAATTGA ATAATGCGGCAGCAAATAATAATGCACCAGATCAAATTACCCCTCAAGCTGAGTCTTCTTCCACCCAAGTGGGGTCTGGT TGTGGTAATTTCACTGTGCAGCAGCAGCAACAGCAGAAGGTTGATGATCATGAAGGTGAGAAAACTTCGATGCAGCAAGT ACCTTCTTTGGATTTTGATCAGTTTTAA
Protein sequence (LotjaGi5g1v0213600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFDGVPDQFHQFITPRTSLPLHLPFPLHASSAPNNNTTFPSFDPYNPSHHQLPFQPNLLHHPLHHKDEEKEENNNTVQPN PMNFQIERDQRQQLPQLQQQQVDPWTNDEVLALLRIRSSMESWFPEFTWEHVSRKLAEVGYKRSAEKCKEKFEEETRYFN NINYTNKSTNINNYRFLTELEELYEEVGTEKSTTHQQQQQQQDKMEERAALDDQDHHDDSVDQTKQNKAQSEEDQEKIMK ERKRKRVDDRFEVFKGFCESVVNNMMARQEEMHRKIIEDMVRRDEEKFSKEEAWKKQEMDKMNKELEMMAHEQAIAGDRQ ANIIQFLKNFEKSQRFGSGNGKEKLKVTSEDSSTLLSQNPSPSPSSTLPTSCALVVAENPSSINLGQDTSSRVVVPFENP SSSLNPQETNSVLIHKGSTIEKDDVGRRWPKDEVLALINLRCTSNNNEDKEGNNKAPLWERISQGMLELGYKRSAKRCKE KWENINKYFRKTKDNTSKKRSLDSRTCPYFHQLSNLYNQGKLVPQSERPEGKLNNAAANNNAPDQITPQAESSSTQVGSG CGNFTVQQQQQQKVDDHEGEKTSMQQVPSLDFDQF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 570 | 557 | 2.6E-195 | – | |
| PANTHER | 14 | 570 | 557 | 2.6E-195 | – | |
| SMART | 101 | 158 | 58 | 14.0 | ||
| Pfam | 103 | 182 | 80 | 4.8E-7 | – | |
| ProSiteProfiles | 104 | 156 | 53 | 6.586 | ||
| Gene3D | 105 | 161 | 57 | 1.7E-14 | – | |
| MobiDBLite | 187 | 243 | 57 | - | – | |
| MobiDBLite | 201 | 243 | 43 | - | – | |
| Coils | 221 | 241 | 21 | - | – | |
| MobiDBLite | 335 | 369 | 35 | - | – | |
| MobiDBLite | 350 | 369 | 20 | - | – | |
| SMART | 425 | 488 | 64 | 0.31 | ||
| CDD | 427 | 493 | 67 | 1.21625E-24 | – | |
| Pfam | 427 | 515 | 89 | 2.2E-19 | – | |
| ProSiteProfiles | 428 | 486 | 59 | 6.748 | ||
| Gene3D | 429 | 492 | 64 | 3.8E-25 | – | |
| MobiDBLite | 524 | 595 | 72 | - | – | |
| MobiDBLite | 532 | 572 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0213600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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