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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0214100 |
Transcript ID | LotjaGi5g1v0214100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF868 family protein (DUF868); TAIR: AT5G28150.1 hypothetical protein (DUF868); Swiss-Prot: sp|Q9NRW4|DUS22_HUMAN Dual specificity protein phosphatase 22; TrEMBL-Plants: tr|A0A0S3SQ53|A0A0S3SQ53_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51958937..51960980) extracted from Lotus japonicus Gifu genome v1.2.
CTCGAGTCGACCAAGTATTTAAGTCAGTAAGCTGCATTGATAAGAAACTCTACTGCTTAACCTAAAACAAACTCGTGTCA GTTGATCTACGCGTTTGGCAGTGTCATCTTAGGTTTTCTTAATATTTTCCCTTACCTTTGGTCAGTGTTGAGTAACCTTC ACAAATCAGCTTTCCAGGTAGCCATTTTTCTTCTACCATATTGTCTTCTTCTTTCTCTAGAGATTTACAGACCTTTTTTG CTTTTCCTTTTTCTTTTCAAATTTGTTGGAGATTTGTTTATACTCATTGACAGTGAAACAAGTGTGCTTTTTTGTCTGCT TCTCTGTGACCCTCTTTTACTCTCTACACATTCCTCTTCACCTGTCTTCATCTTGCACGCGCCTCTGTTCTCTCTCTCTC TCTCTCTCTCTCTGAACCAACATAGATTCATCCATGGCTTTCTTGTACTGTGCCAACACATCTCTGATCCATCAGGGTAA GAATCTCTGCCTCCCTGCAACTTCTGCCTTCTCCTGAGAGAGCCTACTTTCATTATCTACTGTTTGTTTTTTCTGGGCAC CACCTGTTTGTTGTTTTTCCCCACTCGAATTTTTCCTCAGTTTTGAAATTGGGTTGAGTTGGAGATACCCTTTGGAAGAT GAAGGACTTTCCTTCCTGTTTCGGTGAAAATGCAGTTCAGGTTGCAGATTCTTCCTCTTCAAATGCCTCTAAAACTGCAC AGAATCTGGTTATTTGTGTTTACCAGTGCAGGATTAGAGGCAGGTCCTGCTTGATAACCATTACCTGGAGCAAGAGCTTG ATGGGGCAAGGACTCAGTGTTGGGATCGATGATGCTTCAAACCAGTGTCTGTGTAAGGTGGATGTGAAACCATGGGTGTT TTCAAGGAGAAAGGGTAGTAAGAGTCTTGAGGCTAATTCATGTAAGATTGATGTGTATTGGGACCTTTCTTCTGCTAGAT TTGGTGCTGGACCTGAACCATTGGAGGGTTTTTATGTTGGTGTTGTTGTAGATCGACAAATGGTTCTTCTCCTTGGAGAT TTGAGGAAAGAGGCTTTTAAGAAATCCAGTGCTATCCCTTTACCTGGAAATGCTGTTTTTGTTGCTAAGAAAGAGCATGT GTTTGGTAAGAAATTGTTTGGTAACAAGGCTGTGTTTTGTGACAATGGTCAGGTCCATGATCTTGTCATAGAGTGTGATA CTTCAAGTTCCTCTGATCCGTGTCTTGTGATTCGCATAGACAGCAAAACTGTGATGCAGGTGAAGAGGCTGAAATGGAAG TTCAGGGGAAACCACACCATTCTTGTGGATGGTCTTGCAGTGGAAGTGTTCTGGGATGTCTACAATTGGCTCTTTGGTGC ATCATCTCTTGGTAATGCTGTGTTTATGTTCAGAACATGCTTGTCTGAGGAAAAAATGTGGGCTTCTCAAAACCTTTCTG ATGCAAATGTGTTGCAGTGGTCTTTTTCTCAGAGGTTTCCTGAGTCCAAGTCGCAAGGTCTTGGTTTCTCGCATGTTTTG TATGCTTGGAAGAATGAGTAGAGTTTTGGAAATCCACAATCATCATCATCATCATCTATTGAATACTAACTGATCTTTTA GTGAGTTGCGATTTATCAAGAATGTGATTGAACTACACTTGATTAAAGATGAGAACTTTTGTTTGTGTTGGTTCCTTTCT CAAATTCATACCCTCAATACATCTGTGCATTTGAACAGATCGTAGACATTTTTTCCCCCATTTGGCTGTATATTTAATTT ATCTTCAAATGTTAATTCCATGATCCATATTACATGTCTTAATCTTAATTTGTTATTGAAGTGCATTTTCTTTGAATTGT TTTATCAGGATTCAGGAGTATATATCCATTATGCACAGTTTGAGATTGTTATATATTTTTTGATCTCCTTGCTTTGAGAA TTCAATTTATCAAATATGTAAGGCTGGGGAACAGCAAACTAGTAACTAGTAATGTCCAAGAACAAGTAGATACATTCAAG ATTGTGAACCAAATGTGTGAGAATCGCAGGAGTTGAGCGGAGGT
CDS sequence (LotjaGi5g1v0214100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGACTTTCCTTCCTGTTTCGGTGAAAATGCAGTTCAGGTTGCAGATTCTTCCTCTTCAAATGCCTCTAAAACTGC ACAGAATCTGGTTATTTGTGTTTACCAGTGCAGGATTAGAGGCAGGTCCTGCTTGATAACCATTACCTGGAGCAAGAGCT TGATGGGGCAAGGACTCAGTGTTGGGATCGATGATGCTTCAAACCAGTGTCTGTGTAAGGTGGATGTGAAACCATGGGTG TTTTCAAGGAGAAAGGGTAGTAAGAGTCTTGAGGCTAATTCATGTAAGATTGATGTGTATTGGGACCTTTCTTCTGCTAG ATTTGGTGCTGGACCTGAACCATTGGAGGGTTTTTATGTTGGTGTTGTTGTAGATCGACAAATGGTTCTTCTCCTTGGAG ATTTGAGGAAAGAGGCTTTTAAGAAATCCAGTGCTATCCCTTTACCTGGAAATGCTGTTTTTGTTGCTAAGAAAGAGCAT GTGTTTGGTAAGAAATTGTTTGGTAACAAGGCTGTGTTTTGTGACAATGGTCAGGTCCATGATCTTGTCATAGAGTGTGA TACTTCAAGTTCCTCTGATCCGTGTCTTGTGATTCGCATAGACAGCAAAACTGTGATGCAGGTGAAGAGGCTGAAATGGA AGTTCAGGGGAAACCACACCATTCTTGTGGATGGTCTTGCAGTGGAAGTGTTCTGGGATGTCTACAATTGGCTCTTTGGT GCATCATCTCTTGGTAATGCTGTGTTTATGTTCAGAACATGCTTGTCTGAGGAAAAAATGTGGGCTTCTCAAAACCTTTC TGATGCAAATGTGTTGCAGTGGTCTTTTTCTCAGAGGTTTCCTGAGTCCAAGTCGCAAGGTCTTGGTTTCTCGCATGTTT TGTATGCTTGGAAGAATGAGTAG
Protein sequence (LotjaGi5g1v0214100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDFPSCFGENAVQVADSSSSNASKTAQNLVICVYQCRIRGRSCLITITWSKSLMGQGLSVGIDDASNQCLCKVDVKPWV FSRRKGSKSLEANSCKIDVYWDLSSARFGAGPEPLEGFYVGVVVDRQMVLLLGDLRKEAFKKSSAIPLPGNAVFVAKKEH VFGKKLFGNKAVFCDNGQVHDLVIECDTSSSSDPCLVIRIDSKTVMQVKRLKWKFRGNHTILVDGLAVEVFWDVYNWLFG ASSLGNAVFMFRTCLSEEKMWASQNLSDANVLQWSFSQRFPESKSQGLGFSHVLYAWKNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 300 | 300 | 1.0E-165 | – | |
PANTHER | 1 | 300 | 300 | 1.0E-165 | ||
Pfam | 27 | 298 | 272 | 2.3E-103 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0214100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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