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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0214800 |
| Transcript ID | LotjaGi5g1v0214800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-binding storekeeper protein-related transcriptional regulator; TAIR: AT5G28040.1 DNA-binding storekeeper protein-related transcriptional regulator; Swiss-Prot: sp|F4K5T4|STKLU_ARATH Probable transcription factor At5g28040; TrEMBL-Plants: tr|A0A151U590|A0A151U590_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0214800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52027843..52029700) extracted from Lotus japonicus Gifu genome v1.2.
CCAGTAAAACCACCCTCCTCATTCTTATTCTCATTTCCTACCAACTCAACTAAACAAAACAAACACATAAACCCCGTGAC TATCACCACTCTCCAGTTTACACGCTCTCCGCCTAACCAACTCTCTCTCATGGCATCGGAGCGAAACGACACCGTTTTCC CCGAAGAAGATCTCGACGACGACGACCAAACCCTAGAAGACGAAGAAGATCTCGACGACGACGTTTTAGGCGAACCAGAC GAAGACGAAGACGAAGAACCCGAACCCGAACCCTCTCCTTACCCCATCTCCGCCGCCGCCGCCTCCGTCACCGTCGCCTT ACCCGCCACCGTCATCCCGGAATCCCCGGATCCAAAACGCCCCCGCACGGAGGAGAAGAAAGCAACCCCCCTCGACGACT CACGGAGGCTGTTCCAGCGTCTGTGGACCGACGAGGACGAGATCGGGCTCCTGCAAGGGTTTCTGGAATACTCATCGCAG CGAGGTTCCTCTCACCACAACGACACCGCTCTGTTCTACGATCAGATCAAGTCGAAGCTTCAGCTAGGGTTCAACAAGAA CCAGCTCGTCGAGAAGCTGAGGAGGTTGAAGAAGAAGTACCGGAACGTTCTCAGTAAGATCAGCTCCGGGAAGGAATTCT CCTTCAAGAGCCCTCATGATCAAGCTACCTTCGAAATCTCCCGCAAGATCTGGAGTGTTGCTGCTCCGATTGCTGGTCCT GGTGAAGATGATGACGAAATCAACCTTAACTCTAACCCTAACCCTAATTATGGTCATTTGAACGAGGCGGCGGCGATTGA GAAGAAAACACCGCCGTCTAGGAAGCGGTCGCGGCCTCTTGCTCAATTGGGGGTGATCAAAATAGAGGAGAAAGAAGAGA AGCGTGAGTTGAATGATGATTCAGTGTTGAATAAGGATAAGGATAACAATTATAATCTCAACAATCATAGTGAGGATTAT AATGGTAACATTGGTAATGGTAGGCATAGCAGCATGAAGGGTTTGATTGAAGAGACGGTGAGGAGTTGCGTGACGCCGGT GTTGAAGGAGTTGGCCAGTGGTGCCAATTCCATGGGGAGTCCTTTTGGATTTGGGGGAAGAGGGTTTGGGGTTGGCGGGT TCGAGTCGAATCACTTGCCATTGGGTTTGTTGAATTTTGGGGTTGGTGAAATGGTGAAGGATGAGAAGTGGAGGAAGCAA CATATTTTGGAGCTGGAAGTGTATTCCAAGCGTTTGGAGCTGGTGCAGGGTGAGATCAAGATTGCTCTGGAGGAGTTGCG ATCGGCTGGAGCTGGAGCTGGAGGAAGATGACCCAACATGAAAAATCTAAGCTTAGATTCCTTGCTAGAGAGTAATTACT CCTCATGATCTTGATGTTGTTTGCTTGCTAATTAATAATTATTGATCCATGTATGGTTGATATGGTTAGCTGGACAGTTA GTAATTGCATACTACAGATGTTCAATAAAATGTTCCAATATTTGTAGTCTTTTCTGTAAGATTTTCCTTTTTCTGTGCAT TATAATACTTTTTGTAATTGTACATGTAGAGAATGCAGTGAATTGGTACAAGATGAATAGCATTGTATTTTGATGTGTAG AGATATATTTTTACGGGAAAGTTGCTTCATTTTGATGTGAAATGACATTTTCGAAACATCATTTTTGGGATAAGGCGTTT TGAACTCCTGGAATTTGTGTCCAGCCACATTCATGTTCATGAATGTGCTCATAATGTGCTTATCCTACACAAGAAAAAGA AAATTTTGCGGTTTGTTGGGAATCAAAATTTTTTGCATCGGGGATCAAACTCAGGTCACTAGCTTGACAGGCGGGAATAC TCGCGACTATACTACGAC
CDS sequence (LotjaGi5g1v0214800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGGAGCGAAACGACACCGTTTTCCCCGAAGAAGATCTCGACGACGACGACCAAACCCTAGAAGACGAAGAAGA TCTCGACGACGACGTTTTAGGCGAACCAGACGAAGACGAAGACGAAGAACCCGAACCCGAACCCTCTCCTTACCCCATCT CCGCCGCCGCCGCCTCCGTCACCGTCGCCTTACCCGCCACCGTCATCCCGGAATCCCCGGATCCAAAACGCCCCCGCACG GAGGAGAAGAAAGCAACCCCCCTCGACGACTCACGGAGGCTGTTCCAGCGTCTGTGGACCGACGAGGACGAGATCGGGCT CCTGCAAGGGTTTCTGGAATACTCATCGCAGCGAGGTTCCTCTCACCACAACGACACCGCTCTGTTCTACGATCAGATCA AGTCGAAGCTTCAGCTAGGGTTCAACAAGAACCAGCTCGTCGAGAAGCTGAGGAGGTTGAAGAAGAAGTACCGGAACGTT CTCAGTAAGATCAGCTCCGGGAAGGAATTCTCCTTCAAGAGCCCTCATGATCAAGCTACCTTCGAAATCTCCCGCAAGAT CTGGAGTGTTGCTGCTCCGATTGCTGGTCCTGGTGAAGATGATGACGAAATCAACCTTAACTCTAACCCTAACCCTAATT ATGGTCATTTGAACGAGGCGGCGGCGATTGAGAAGAAAACACCGCCGTCTAGGAAGCGGTCGCGGCCTCTTGCTCAATTG GGGGTGATCAAAATAGAGGAGAAAGAAGAGAAGCGTGAGTTGAATGATGATTCAGTGTTGAATAAGGATAAGGATAACAA TTATAATCTCAACAATCATAGTGAGGATTATAATGGTAACATTGGTAATGGTAGGCATAGCAGCATGAAGGGTTTGATTG AAGAGACGGTGAGGAGTTGCGTGACGCCGGTGTTGAAGGAGTTGGCCAGTGGTGCCAATTCCATGGGGAGTCCTTTTGGA TTTGGGGGAAGAGGGTTTGGGGTTGGCGGGTTCGAGTCGAATCACTTGCCATTGGGTTTGTTGAATTTTGGGGTTGGTGA AATGGTGAAGGATGAGAAGTGGAGGAAGCAACATATTTTGGAGCTGGAAGTGTATTCCAAGCGTTTGGAGCTGGTGCAGG GTGAGATCAAGATTGCTCTGGAGGAGTTGCGATCGGCTGGAGCTGGAGCTGGAGGAAGATGA
Protein sequence (LotjaGi5g1v0214800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASERNDTVFPEEDLDDDDQTLEDEEDLDDDVLGEPDEDEDEEPEPEPSPYPISAAAASVTVALPATVIPESPDPKRPRT EEKKATPLDDSRRLFQRLWTDEDEIGLLQGFLEYSSQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNV LSKISSGKEFSFKSPHDQATFEISRKIWSVAAPIAGPGEDDDEINLNSNPNPNYGHLNEAAAIEKKTPPSRKRSRPLAQL GVIKIEEKEEKRELNDDSVLNKDKDNNYNLNNHSEDYNGNIGNGRHSSMKGLIEETVRSCVTPVLKELASGANSMGSPFG FGGRGFGVGGFESNHLPLGLLNFGVGEMVKDEKWRKQHILELEVYSKRLELVQGEIKIALEELRSAGAGAGGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 88 | 88 | - | – | |
| PANTHER | 1 | 387 | 387 | 9.5E-115 | – | |
| PANTHER | 1 | 387 | 387 | 9.5E-115 | ||
| MobiDBLite | 10 | 47 | 38 | - | – | |
| MobiDBLite | 74 | 88 | 15 | - | – | |
| Pfam | 95 | 189 | 95 | 1.1E-34 | ||
| Coils | 143 | 163 | 21 | - | – | |
| MobiDBLite | 251 | 281 | 31 | - | – | |
| MobiDBLite | 264 | 281 | 18 | - | – | |
| Coils | 362 | 382 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0214800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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