Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0224900 |
| Transcript ID | LotjaGi5g1v0224900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | splicing factor-like protein; TAIR: AT1G09140.1 SERINE-ARGININE PROTEIN 30; Swiss-Prot: sp|Q9XFR5|SR30_ARATH Serine/arginine-rich splicing factor SR30; TrEMBL-Plants: tr|G7I8Q6|G7I8Q6_MEDTR Pre-mRNA-splicing factor SF2-like protein; Found in the gene: LotjaGi5g1v0224900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53153723..53160512) extracted from Lotus japonicus Gifu genome v1.2.
CACGTACTCACCTCAGTGCTTCTTCCAGAACCATCGTTTTCCATTCTTCGCATCTCTCACTCTCTTCTCAATTCTCATCT TCTTCACAGGTACCAATTCCCTCTCACAATCCTCAATTTCTCTATCGCTGCAAATTTTCTCAGTCACATGTTCGTTTCTT TCATCTGAATTTTTCATTCACTTTCTTCTCATAATTCCCAGTAGATAGGGTTTGATTCTGGTATTGCCACTTTGCCGTTT CTTCATTCTCGAAATTTCTACCAACTTCGATCGATCGAGCAATATTCCATAGATTTAAGCTTTAATTCTCAGGGATTGAT GTGAATCTGAAATTATCATGTTCAATTAATAAGGGATTTAACATTTGAAGAAGCTAAATCTAATGGCATTAGGATTCTAC TGCAACTAGAACTGAAAATACTAATTGAAAAAATTAACCATACCAGAATCACCAAGTAAATAGGAGCATAATCCTGATAC TTAATGGCTTGTATGTATTTTCTTTTTTTACTATAGCAGATTTGTCGTATCAGTCACGCTTCATATCATTTTAAATTTCC CGTGTGTGAGGAAAAATCATATGATTGTTGTAGTAATTTTTCCAAGGCGTGACTTCTTCAAATTCTGTATGTTTCCATTG TTATATGTTAGCTGAATTGATTCAATAATTTGCAGTATGTGTGGGGATTCATGTTGAAACAGTGTTTAAGTGTGTAATTG ATTTTTTCAACCGTGCTTCAGGAAAGAAAATGAGCAGCCGGTCAAGCCGAACAATTTATGTTGGCAACCTCCCTGGCGAT ATTCGCTTGAGAGAAGTAGAGGATATTTTCTACAAGGTACTTGTATAGTTGTATTTAATGCATATTATTATATGTATTGT AGCATTGGATGTGTTATGGTTTGATTACCAACATAATTATGTTAGAGAAATGCAGTAAAGAAGAATCCTTGTTGTTCTCT ATCAATTATTACTTGCCATTTTATCTTGTCGTTTACTTTCATTGTAATGCGATAGTAGTCGAAATTGGGATTATGACCTA AATCGGGGAGGGGGTTGTAATTTGTTAATAGCTAAACTGCAACTAAATCACAAGATTTAGCAGCTTTTGATATTTACACG CAATATGTACACACACACACACACACAAGTTCTTATATGCATCTAAAATTGCATAAATAACCAACATTCATAGGAATGTC GTACATAGTCATAAAGGGTCATAAAACATAACTCGTAATTCATAGGAATGTCATACATAAGTCATAAAGTACTAAATGGG AATACCATTAAAACTTAAACATCAAGTTCTCATCAAAGCATAAAACTTAATATCCAACTTAAGTTAGGAAATTTTCCACA TTAAAATCATCAGGACCCTCCATTAGATCCTCATCATCAGGTCCATCAACTTCATCAGTAAAGTTAAGCTCAGCCGTCGC CACCATCGTTGGCGGTGGCTGTCGTCACTCCCTGCAGAGCCCCTTGGTTGAAGTCGCCTCTAGTTTTAGAGGTGAGACGT GAGTGACTCGTAATGTCGTATGAGAAGCTTTGTGTTGCAAACCCATAAAAATTACGGTTTTTCTCACATGGTTCGCAAAC AAACGGGTCAAAACTCGTGAAATTCCGGATCTGCCTAAGTTGCATAATGTCCCTCAATCCTGATTTTAGTCTGTTTAGTG ATTTTGGGGCGATTTAGCAAGAAAGAGATTTAAACCGCCCCGGGTTTGCAGATCTCAAAATCATGCGATTTAGTGATATA AATTGCAATTTTGACTACCAATATCCACCCACATTTTTTTTATAAATATAGTTGTAGGTTAGCAGGCCTGGATTTTTGTT TCACTAATTGATTTCTTCTTTGTCTAATTGCAGTTTGGTCCTATTGTTGACATTGATTTGAAGATTCCTCCAAGACCACC AGGTTATGCTTTTGTTCAGGTATGTCCTGATTACATTTTGCGAGGACATGAAGAAGCGTTTATCAGTCATCACATGCATT TTAGGTCCCTTCTTCTGTCTTATATTTATCAAATGTTATATTGCAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATCT ACTATCGAGATGGTTACGATTTTGATGGTTTTCGGTTACGAGTTAGTAAACTTACCCTCCTTGCTCTTTTGTCCTTTTGG TCTCTATGGGACTCACTATCTAATTTCCTCATAAACTTTTGGTCATTGCTTATTACTGTAGGTTGAACTTGCACATGGGG GACGGGGTTCTTCATCATCAGTAGACCGTTACAGTAGTTATAGTGGTGGCAGCAGTAGCCGTGGAGCTTCCAGGCGTTCT GACTATCGTGGTAAGCATTGTTTCCAATTATTAGTTTTTTTAGCTTGATATCATTATACCGTAATTTATTCTTATTTGTT TGTCTTATTTTATATTTATACATCACAAAAGAAAGTTTTCACTGACCCTATTTTGTTCTGTTTGTAGTTCTGGTGACTGG ATTACCTCCTTCCGCCTCATGGCAAGACCTGAAAGTATGAATTGCTTCATTCTTTTTACTACCTGAAAGTATGATGTTAA AATTATTGTATTGGTTGAAAATTAATGAACAATATTGTCTGATTATGAGTTTTAAATGACTAGGATCACATGCGTAAAGC TGGTGATGTGTGTTTCTCTCAAGTTTTCCGTGAGCGTGGAGGTAAGTGGATTGAGATATAATTAGGCATAATTTTTATTT GATTGCAAAATGCTTAGTGCTGAGGGTACTTGAGTTAGGCAGTTGCGCTCTTCAGCCCTTGTATTAACGGAGATTCGGAG AATGAAAAAATAATACTACCCAAGAATGAGGAAAGCTTTTATTCCTTTGAGCTCCTCAACATTGGTTGTCTTTGCATAAT TGATAAGCAAGAGTGAGGATATTTTCCTTTGGAAAGTACAGAGGTAGTTGTCTGCCATAATATTATGATGCGGTGTCGTC AAGAGATATTTCCTTGAAATTAAGATGGCTTTTGTGTTTTTGAGTTTCTTAAGAAGTTGCTGAGATTGATGTGTGGATGG GCTATGGTAAGGGCTAAGTAGAAAAAGAAAATTCAAGACTAAACACAGGTTTGATTTAGATTTATTTTCTACACAAAAGT AGGTTTAATCTAAAAGTTCTCTTTGCTTCATTTTGATGATAAAAAATTTTGTGACCACAATATAAGCTAATCCAAGTATG TGTTGAAGTGCTTATTTAGTTATTTTGGTAGTTGTTTTTCATCTTTTCTGTTAATTCCAAATGAAATTGATATGGGTGAA TTACTTATTCTGGAAAACTCTTAAGATTTTTGAACTGATTTACTTGTTAAATTTTTCTCTCATAGTTCTTATACAATGGT ATAATTTGTATGTAGGCATGACTGGGATAGTAGACTACACCAATTATGATGATATGAGATATGCCGTAAGTATTGTAAAC CTGTAATTTTGTACTTACTTGCCTGGCCATATTAAACTGGATTTCACTATGACTGCTATTCTGACTAATGTTCTGCCTCA ATAATTTGGTATTGTTTTACAGTTAAGGAAACTTGATGACTCAGAATTTCGAAATGCCTTCTCTCGAGCGTACATACGGG TGAGTGATACATTTGGCTACATTTTGCTTTCTCTTTATGTACTTGCTTTCCTTACCATATCTCTCTGGTTGGTCCAGGTG AGGGAATATGATCGGGATTATTCTAGAAGCCCCAGTCGTGACTCTAGGAGAAGCTATTCTCGAAGCATCAGCCGCAGTCC ATATTTATCACGAAGTCGAAGCCGAAGTCGTAGCTATAGTGGCAGGAGTATAAGGTTCAATTCGGTTGCTTTGGTGAAGT ATGATTTGTTATTGTTTTTTGTAGCATTGATGAATTGAGTGTCCATTTCATTTTCTGCAGTTTGTCTCCAAATGCAAAAC ACTCTCGACGTTCGTTATCTCTTTCAAGGTCAGTTTTTACCTAATCCTGTTATGTACAATTTACTTTTGACGCTTCTACA TAATAGGCCACTTGAACATTACTAAAGTATTTTTAGTGAATAAGAGCATTTTTTTCATTAAAGTAAGCTGTTTTGCTTGC AATATATTTTCTAGGAGCTTTTTCCCAAAGGTGGTATTATGTGGTCTATGTTAGAGGAGGGTTCCTATTGCTTTGGTAGT TGATAACATGATAAAAGGCTTCGGTTCTCTTAGTGACCCTTACACTATTCAACATAACCAGTTCTCTATTACACATGATT GTTCCACTATTGTCAATGTGTGCTTCCTTTGTTTTATCATGAATTCACTACTCCACCATGACTCCTTCTCTGTGTAGTTT AAATTTTGAAAAAAAATTGGGCAAGCAGAATCCTGTTTAAGCATTGAAATTACATATTTGATATCTTCTTAAGGCGTGAT GAAAACTTAGTTTGTCATTTGGTCTTAAAGTTATCACATATATTATTGTTACACGAGTAGCAGTGAGACAGTAAGGTATA AGTGTTTGGTACCTAGAATAGCATGTCTTTCCTCTCCACTTCAGGCTCAGATGATGTAAAATTAATCAGATGAACTGACA ATTATAATAATTGGCAGCAGAATTCATATTTAGGCATTTCAATTTTGTTCTTTGAACTTCAACCATGTCTCTGCATTTTT TTAAGTCTCTTTGTTTTCCAAACGCGAGCAGTGTTATCAAATATCCGCCATGGCGGATTCTCATGGTGGGTTTTCGTCTT TTCTCCATGGCTGATATCCCGCCATAATCTCTATAGTCCACCATCTGCCATCATTATTTGTCAAATATGGCGGGTTTTTT GCTCTCTTCCATCCGCCAGTAACAACACTACACGCAATGGCTCTATTCCTTTCACATCTCACCTGATTTAGTAGGATTGA GTTTTCAACTGTGTAATTTGCTAGTCAGGAACGGAAATTCTTTGAGTTATCTACTGTTGTAAGGATATAATATCCCTCTA TTTCAAATTTATGATTTAATTATGAAAAGCCTTGAATGTTCTTTGTCCATGAGATTGTCTAGATCCACATGGTATTGCAT TCAGTTTCCGTCATGGACGTATTGTGCTTTTTATTTGCCATTTCTAGAATATTTTGATACTCCTAGTTGGGTCTGAATTC ATATTTGCTTGTCCTTTTCCTTTTTGTGCAAGGTGTAAGGCACATATCATTTCCAATTAATAATTGTCTGAAAGTGAACA TATTATTATATGCCATCCACTTTGATTTTTTCACAAAGGCTAATACTGCACCATGGACCTATCAGCATGATTTTCCATGT GGAAAGGTTGAAGGGGCATTGGTAAAGTGGTCCTCGGCTTGGCCACACTAGATACACAATGTTCACTAGGGTTGCCTCTC TTGTTTTTTAGATGTGGCCTTTTGCGGGGATCTGGGAACTGCATGTTAGGATCTTGATGGCATGTGGTGCTCAAACGCCC GCGACTTTGTGGTCTAAGGTAATAATTGTTTTGTTGATGAGCACCTGTGGAACACATTAATGCTATGACTAATGATAATG GTAATGATGTATTGATGAAAGGCATGGTCTGCGATTGTTGTACACTGGATGACAGTTGATGGATGTGTTGCAATCTAAAA GCTGGATCACCATGAACTAAATGCTATTGATTGATTCCAACAAATGCAAATCAGCAGTATTACAGTTCAAAAACTACGAC ATAACCTGTGCTCTAAGTTCTGGGTCAATCTCATCCTTGTTTTTAGGATTTGTCTTATTGTTCTATATATGGTTGTATCT TCACGATACTTGGTTCAAAGGTATCATGCACTGCTGACAATAGAATTCAATACAGCTTTGTGGTGGATTAATTTTTTGGT TATGAATTTGATGTGGAATATTGGACTCATAGATAAAGTATTTTTGTGGATCATTGTGGATATTGAACTATGTTTTGCTC CTTTAAAAATTTGCAGGTCCCAGTCAAGATCCAGATCTCCAAATTCATCTGTAAGTGCTATCTAAATTGCATTGCTTAAG ATTATGTTGGGTAGTGATGGAGGGAAAAAGGCATAGTAGTTTTTTTCTTCTCGACATTTGCATGATTGCCTTTGGATATG GTGTCTGTCTGCCAAGCAATAACAAAGTGGAATCAAGATGTAGTGATTTAAATGTGAAGGATGGTTTATTTTAACATGAA ACCATTCTATGATATATTTTTATACCCTTACTTTGTGTGCTATTCAGCCTCGACTTCGTCAGAGTCGCAGTCCAAGCAAA AGTCCAAGGAGTCCGTAACAATCTCATTTGGCTTAAGTATAACTCCTAGCCATTCAAGTTGTCGATTATGGATTTACTAT TTCTCTGTTTCAAAAGTTTCTTTATATTCTAATGATAGTTCTGATCGACAGGTGGAATTTGTACGCAGCTGAACTAATAA ATCTGGAGACAACTACTGAACATGCATTTCCTGTGCTGCATTTTAATGGCGACTTGAAAATTAGCATATTCAAGACCTGA TATAGCTCTGTAGCTCTATCTAGATTTATATTTGAATTCAAAATTGGATTGAAGAAGCCGTGAAACAAACCTATTTGTGC ATTTAAATTTGAAGTGGATGGTTCGAAAGAACTGAAGTTACCTATATTATGAACTGCATGGCGGCTGTGTTGCATTCTAA CATGCCCTGGGATTTTAGTACTCTAACGGTGATATTGGAGTGGCTAGTTATTATGTTTTAATAAATGCCAAAACTTTTCT ATTCCCTTTTTTAATAAACATATATTTGTTGTATTGTGGTTGTCAAAATTATATAGTTGATCAATAGTTT
CDS sequence (LotjaGi5g1v0224900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGCCGGTCAAGCCGAACAATTTATGTTGGCAACCTCCCTGGCGATATTCGCTTGAGAGAAGTAGAGGATATTTT CTACAAGTTTGGTCCTATTGTTGACATTGATTTGAAGATTCCTCCAAGACCACCAGGTTATGCTTTTGTTCAGTTTGAGG ATGCTCGTGATGCTGAAGATGCAATCTACTATCGAGATGGTTACGATTTTGATGGTTTTCGGTTACGAGTTGAACTTGCA CATGGGGGACGGGGTTCTTCATCATCAGTAGACCGTTACAGTAGTTATAGTGGTGGCAGCAGTAGCCGTGGAGCTTCCAG GCGTTCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCCGCCTCATGGCAAGACCTGAAAGATCACATGCGTAAAG CTGGTGATGTGTGTTTCTCTCAAGTTTTCCGTGAGCGTGGAGGCATGACTGGGATAGTAGACTACACCAATTATGATGAT ATGAGATATGCCTTAAGGAAACTTGATGACTCAGAATTTCGAAATGCCTTCTCTCGAGCGTACATACGGGTGAGGGAATA TGATCGGGATTATTCTAGAAGCCCCAGTCGTGACTCTAGGAGAAGCTATTCTCGAAGCATCAGCCGCAGTCCATATTTAT CACGAAGTCGAAGCCGAAGTCGTAGCTATAGTGGCAGGAGTATAAGTTTGTCTCCAAATGCAAAACACTCTCGACGTTCG TTATCTCTTTCAAGGTCCCAGTCAAGATCCAGATCTCCAAATTCATCTCCTCGACTTCGTCAGAGTCGCAGTCCAAGCAA AAGTCCAAGGAGTCCGTAA
Protein sequence (LotjaGi5g1v0224900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGYDFDGFRLRVELA HGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDD MRYALRKLDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPNAKHSRRS LSLSRSQSRSRSPNSSPRLRQSRSPSKSPRSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 92 | 92 | 1.3E-23 | ||
| PANTHER | 1 | 260 | 260 | 3.2E-118 | – | |
| PANTHER | 1 | 260 | 260 | 3.2E-118 | – | |
| SUPERFAMILY | 5 | 178 | 174 | 1.23E-34 | ||
| ProSiteProfiles | 7 | 82 | 76 | 17.131 | ||
| SMART | 8 | 78 | 71 | 6.1E-21 | ||
| Pfam | 9 | 76 | 68 | 3.1E-16 | ||
| MobiDBLite | 82 | 105 | 24 | - | – | |
| MobiDBLite | 87 | 105 | 19 | - | – | |
| Gene3D | 110 | 188 | 79 | 2.7E-21 | ||
| CDD | 111 | 186 | 76 | 1.24015E-45 | – | |
| ProSiteProfiles | 111 | 189 | 79 | 9.524 | ||
| SMART | 112 | 181 | 70 | 5.8E-6 | ||
| Pfam | 113 | 175 | 63 | 2.8E-10 | ||
| MobiDBLite | 189 | 272 | 84 | - | – | |
| MobiDBLite | 189 | 204 | 16 | - | – | |
| MobiDBLite | 205 | 272 | 68 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0224900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…