Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0225300 |
Transcript ID | LotjaGi5g1v0225300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Auxin-repressed/dormancy-associated protein; TAIR: AT1G56220.5 Dormancy/auxin associated family protein; Swiss-Prot: sp|Q8LD26|DRMH3_ARATH Dormancy-associated protein homolog 3; TrEMBL-Plants: tr|A0A0B2SGB5|A0A0B2SGB5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0225300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53195690..53198771) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCATGCTGCGTTGTTCTCCTTCCACAATTCCAGAACCTACTTTCTCATGGGCCTTCTTGATCACTTGTGGGACGACA CCGTCGCCGGACCTCCGCCGGAGAACGGCCTCGGAAAGCTCCGAAAGCACCACACCTTCGCTTCCCGATCTAGCCCCGGC AAAGGTACGCATCAAACTTTGCCCTCAGCTAATGAAACGCTAGACTTACCCAAATTAATATATTAGATGTTCACGATATT TTCAGCTCAATTTTCCTAATAAGAATTACATTTTAGCTTAGTGGTGAATTTGATCTACGCTTCAAGTCCAAACAAACAAG TTCAAACAAGTTCATGCATGTGGACCGTGATAGAAAATAATATAAAATTATTTATGTATCTCTTACACAATAGGTTTAAG TTTTTGGATAATTGGTTGGTCGAGAATATTAATAGATTATAACAAATATTTGTGTTATTCAAATAATGAGAACTGCAACA TTAAAGTCCTTAGCACATTACGATCTATATATCTATCATCTATTCAACATAAAATGATGTTTATTTAAGGTATTGACGGC GTTGTGTGATTTTGCATCTGGTAATTGATCAGAATTAGCAGACGCCGCCGGAAGCGTGAGACCCTACGGTGTAGATTCGC CGGAGGATGCGACGAGAGTGACACGTAGTATCATGATCGTGAAACCACCTGGTTACCAGAGTCCTAGTGGATCTGCTCCG GCTTCGCCTGCGGGCTCTACTCCCCCGGTGTCTCCATTTTCTGCTCCATTGTCTCCGTTTTCGGGTAAGGTAGTTTTTGT TTATTTTTTCCTCTACGAAGAATTTTTTTGTTTACAATTATTTTCTGAACTTTTTATTTTATCCTGGTTTTTTAATTAAT CAAGTATAAGAATATAATTGAAAAATAAAAAAGAATAATGTTACCTACACACCTCTAAGAGAGGTGTTAGAGGTGTGTAG AGGTGGAAGGAAGAGAGAGATAGAAAGAAAAGAAAAAGTAAGAGAGAGAAAGTATGAGATGTGATAGATGATAAGAGGAG AGAGATAGAAATAAAAATAGGTAGAAATGAAGTGTTTAAAAAGGGAGGTGTGTATATATCATTACTCAATAAAAAATGGT TTAAATATATTTTAAATCTAGATAAAATTTATAACAAAAATCACATTATTTTTGTATTTTGGTGTAAAAAAGTAAAATTA AAGTATGTCAATTTTACAAACCAACAACTTGTCAATGGTGTGATCCGATAAATATATGTCAATTTTACATTATCTTAAAT TACAATTCCACACCTACAAGTCCATCGAAAGTTTGTAGATAAGAGAGTTTCTTAAACATTTTAGTGAATGTTTTGATATG TGGGTACTAACGTTCTAATTATTTAATATGATCTCTAAGAGATTTGAGAAAAGATATTTTTAATGAGTAAAATGACTAAT GAGGCCCGCCTGTATGGGAGCATTGCGTGTGGGGAGTGTCTTCCGGGAGAGTGTAGTGGCCGGGAGTGAGCGAAAGTGAT GTTCTAGAAAATTGCATAAGGGTAGTTTTGTCATTTCGTGCGGCATCTGTCTTTCAAATTTTTAATCAATGGCTGATGAT CAGAATCAAGTTGGCTGGTCATGTGGGTGTCTCATTTTATTCAACAAATATCGGATAATTGAAAAGGACTTGCGCGCTCT GCATGTCCATGTAATAATCAACAATATATGTCTTTTTTTTCTTGAAATTAATCAACAATGTCAATACACAATTATATGAG CGTTATCCAATTTTCCATTTAGGCTTCAACTCAGGATTCATGTGTGTAACAAAATATTAACATGCTTAATTATCTTTGTG ATAGGAACCAGAGAGTCGTTTCGGTTTCGAAGAAGGTCGACATCAGATGCGTACGAGAAGGCTGCAAGCGAAAAAAGACC AAGCCCTTCTTCTCCTTTCCATGTGTGAGAAATGAGAGCATGATCACTTTGTCCCTCCATGGATGACCGAAAATGTGTTT GTTTTGCTTTGGTGCTATCCATTTTTGTTTACCTTTTGTGCATATAAATAATATATGTGAATAGTGTGTGTGTTAGTGAG TATATCAGTTAAGGTCATGCGGGTTAGTTAGCATCTCAGTTGCTAATGGTTCGTCAGTTTGTAAATAAGAGCTTGAGACT TGTGAGGAGTAGGAGGTTTGTTTGTATTTTGAAGCCTTTCCTAACGTTTGTTTGTGGTTTAATTTGCTTTCTCGCTGTAA AAGCTTTCCTATTTCGTATAATATGTAGTGAGTTTCTGTTTCACATGTACGTTCTGTTATTGGTTTGACCGTTTGAGTAT TTTTCGGTGGAGGGGTATTAATTGGGAGGAACAGAGGGGCTGAACCTGAACATGACAAATTCTCAAGGAAATTAAAATAT CCACACTCACACACACTATGATGGTCCAGTTTTTTTTAGATTAATTAATTTGTTTTGTTCTTAATAAAGGACAATGTCTT AATGGGACAGCAAAGGAATTTTTTTAAATAACTAAATACTATGATTACAGAAGAAATGTTAGCAACATTAACTTTAACGA TTTCTTTTTAACGAACTTTCTTTGATCAGTGAAAATTTATGTAAGTTTCACACCGGATTTTTGAGACTTACATAGACTAC TAATTATAAAAAATGGTGGTAAAGTGAGTGTTGGCAGTATTCATAAATAACTTATATTAGTAATTTATAAGACATAAACG CCCAAAGGTGGTGGAGACAAGACTCGATCAAAAAGAATTTCAAAAGTTTTCTAGGAGTACAATTATTTAATTAATTAAAT ATCTAGTCGTTAGTATATACTCACCCTAAAAATTGATAGCTAGGTAAGTTAATTGACTTGAAAAAAAGAGTCTGTCCTAC ATTAGAATGTGACGGTATTTACGTTTTATGCGTCCATCTTGTTGAGTTGTTTCTAGCATAAATGTTTGATGTTAATTGTC GTGTTCCCTGAAAAACTTTGCAAGACATGTAAATTCATTATCATTGTCCCTATGAACAATTTTATTGTTTGTCAAATTGT TATTCAGTCAAAGGAAAAAAATTCTTAAGAAGTTGAGACACT
CDS sequence (LotjaGi5g1v0225300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCCTTCTTGATCACTTGTGGGACGACACCGTCGCCGGACCTCCGCCGGAGAACGGCCTCGGAAAGCTCCGAAAGCA CCACACCTTCGCTTCCCGATCTAGCCCCGGCAAAGAATTAGCAGACGCCGCCGGAAGCGTGAGACCCTACGGTGTAGATT CGCCGGAGGATGCGACGAGAGTGACACGTAGTATCATGATCGTGAAACCACCTGGTTACCAGAGTCCTAGTGGATCTGCT CCGGCTTCGCCTGCGGGCTCTACTCCCCCGGTGTCTCCATTTTCTGCTCCATTGTCTCCGTTTTCGGGAACCAGAGAGTC GTTTCGGTTTCGAAGAAGGTCGACATCAGATGCGTACGAGAAGGCTGCAAGCGAAAAAAGACCAAGCCCTTCTTCTCCTT TCCATGTGTGA
Protein sequence (LotjaGi5g1v0225300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLLDHLWDDTVAGPPPENGLGKLRKHHTFASRSSPGKELADAAGSVRPYGVDSPEDATRVTRSIMIVKPPGYQSPSGSA PASPAGSTPPVSPFSAPLSPFSGTRESFRFRRRSTSDAYEKAASEKRPSPSSPFHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 136 | 136 | - | – | |
PANTHER | 1 | 116 | 116 | 7.1E-50 | – | |
PANTHER | 1 | 116 | 116 | 7.1E-50 | ||
Pfam | 7 | 85 | 79 | 4.7E-6 | ||
MobiDBLite | 106 | 124 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0225300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…