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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0234400 |
| Transcript ID | LotjaGi5g1v0234400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRIP and coiled-coil domain-containing protein, putative; TAIR: AT3G05900.1 neurofilament protein-like protein; Swiss-Prot: sp|O88799|ZAN_MOUSE Zonadhesin; TrEMBL-Plants: tr|I1LAY3|I1LAY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0234400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54233569..54239354) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAAAATTAAGAAAATAAACTTCTGAATTTCAGAATTGGTTGTTAAAAGATAGAAGTTAATCTAAACGCGTTTATAAA TCACAAGGGTATTGAGTCATGAGTTTTGACTAGAGGGTCCCAACATTTTGTACCGTTAAATGTAGGCTAGGAGTTTCTTT CTTGGCGCTGATCTGGTCCCAACCAATCACTCCAATAAAGCTAGTCACTTTGTTTGCCACAGCTCACAGTTAGCAATTAT ATAATCAACTTTTCTATTTCTATACTTTTTAATTTTTGTTTTTTAATGTGAAAACTTTAGTGGCACATTAATCTCCTAAT CCTGCTAAATCATTGAGTCCACCATACCATACCATGCCATACCAGCTCATGTGATACAGTCTGTCAATTACATCTCAGAC TCTTGCCTTTTTCTGTGGAAAACAAGTTGTTCTGCTTCTAAAGTTGAACTGGCTTTCCTTCTTTTCCTTGGAGTTGTTGC CAACCAAATTATTCCTCTCACTTGAAACTTTTCTTTATTTGTTTCTCCAACTCAAGTTTTCTCAACCTTGGAAGTTAGAA GGTCACTTTGATAGCTTGGATTTTGTATCATGGCTACTGAGACTGTTGTATCTGATCATGCTTCTACAACTGATGAGGTT TGTTCCTTGATCTTGAGCTTCTTCATGTAGTATTTTTGCTCAATTTTAAGCACAAGTCACTTTGATCAAGCTTACATGTT GCTTTTTATGTTTCTTTTTGGAATCAAGCTTACATATCACTACTCAGTGGATAACTATGAGCAAACTTGGCTGATGGTTT TCTTTTGAAAAATATTATATTTATGATTCTTTTTTTGGGTGAAACAATTCTGGAATACTGAGAAGTAGGAAAGTTTGTTG AGTTTTGTTGGTTGTTTATTTATTATCCTTGCTGTTTTTACTTCAAACAAAATTAGTTATTTAAGTATTCACAATAACTT GCATGTGTTTGTTCCAGATAAGACCGAGTGAGACTTATAACTTCAATTATAAAAGGAAATTAGTTTGATCTATGAAAGAG TATAGACTATAGTCTACCTACCAAAATCAGATCTAGAAAATAAGTATTTTGGTGTGGACTGTGGGGCACAAATGAAATGT TAAATGAATAATTCAACATTAATCATATTTATAATTAATTTACTTTCCTCATTAACTTGATGATTCTACTAACAATTGAT TCTTACAAGTTCAAGTTTTAAGTATACATATATTTTTCATTTAGGAGCTTATATGTATTTTAGAATTCACATGTAAATTT TTTGAATTTTCATAACATTAAAAGCAAGTTTGAGACCAAAAGTTGTCAAGTTGTGCCCAATGGATTGAAAATTTTCTTTT CAATATTTACCTTCTTCTTGGTCTTAGTGGTAAAATGTTGACATGTTAATCAAAATTCATTATGTAAATTTATATCCATG TCACTCGTATCTTCTTTAATTAACATGACAAAATTTATCCACGTGGAATAATATTTTCATCTAGGAAGTCACACAAATGA TAATAAAGTTGCACATCTTCAAAAAAAAAATTATGAATTGTATTTAACATAAAGAGGCAAACTGGATTCAAAACTTGTTT GTGCTTTTCAACCTCTAAATTTACAATCCTAAGTTGGCAGTTATTGTATTCTTAAAAAGACTCTAAACATTATTTTGCAC ATCAAGAAATTGTTAATCTAACATAAGTACATAACCTTTGTTTATATTTTAAAACAAAAAATGAAAGGGGGTCAAGCTAA GAATTCAAGAGTAGTAAGCATAGAACAGTTACAACATGTCTCCCCTCTTATTCTGTGATTGCATCTAGTAGATAGTTTTA TAAGATAAGACAGATATGACACATACACTTATAACTTAGATGAAAGAACATACCAGTGTGAATGTGTGATCCATGAGAAG ATGTTTTCAGCAGACAAAATTACCTATAAGGGGGAAGGGGGGGGGGGGGGGACATTCATATTTTGTAATTTGTTTTCTAT ACATACGTCTGTTTTGTGTTTATGCTTAAGCATCTCTTCAGTGGGCGCTCTTGATTGAATTATAAATCATTTTCCATCTT TTATCATGTAGAAATTTGTGAAGATTGAAAAGGACGAAGCTCTTGCAGAAAAGATCGCTTCTTTAGCCAACGAAGATGGA GTCGAACAAGACAAGCCTGAAGATGCACAAGATCAAGCTACCCCTTCATCCAATACAGAAGGAGATGAGGTGAAGGCTGA GCTTGCTGCAGCTGAGATTGAGAAGCCTGATGATTCTCCTGTATTAGAGGCTTCTGCTGAAGATATTAATCTGAAACAAG ACAATGTTGAGGATGTACAAATTCCAGAAGCCCCTTTCTCTAAGACAGAAGAAGAATCTGATAAGAAACTTGAGCCTGAA GTTACTGTAGACTCAACTGATGATTCTGTGCCATTAGAGTCAAATGTTGCAGTTGCCGACACTCTTGAAGAGGAGAAGGA ACTGATTATTGATTCACAGACTGGTAGTATCACAGAACCAGTACATGTTGCAGCAGATGAGCCACAATCCACTGAACCTG CTGAGAAGGAAACACCACAGGAGCAAGAAAAGGAACCTGTGGAAACAGATGAAGAGAAGCAACTCGAGACGGCTAAAATT CTAGAAGCACCAGCTGAAACCTTAGAAGAATCAAGTGACGTTGCTGAGAATAATCCTCAGAAAGAACCTGAGGTGGTGGA AGAAGCTAAAATTGTGGAAACAGGTGTCCAAGAGGAGGTGAAGACTGAACCTGAACCTGTGGCCACAGAAAAAACTGAAC CAGAACCGGAATCTGAAGAAATATCACAAGTGGCTGAGGAACCAAGCACAATTGCAATTCCAGAACCACAAGAGGCAGAG CAACCAAGCACAGTTGCAATTCCAGAACCCTCAGCTGAAGCAGATGAGAAACTGGGGGAAACCATAGAGGAAAAAACAAC GGAAGGGACATTGGAAGAAACCGACAACAAGGATGTAGAGCCTGCAGAAACTGTGAAAGAAGAGCCTGTGATTAGTGCTG AAGTTGAGGAAAACAAGAAAGAACCAGAAGAGCAATCATTGGAACAAAAGGAAGAGGAGCAACCAAACACATCAGCAATT TCTGAAAACTCCACAGAAACCGGTGATGCCATTGCCATAGAGGAAACAACAAGAGAGCTAGAATTGGAGGTAGAGGCATT GAAAGAGACTAACAACTTAGAAGCAGGCCCCGAAGAAACAGTGAAAGCAGAGAATGTGGTTACTGCAGTTGATGAAAACC AAATTGAACCAGAAAAACAACCATTCACACAAGAGGAAGAAGAGAAGCCAAACACAGTTATCACTGAAACAGCAGCTGAG AGTGAAGAGAAGCCAAACACAGTTATCACTGAAACAGCAGCTGAGAGTGAAGAGAAGCCAAACACAGTTATCACTGAAAC AGCAGCTGAATGTGAAGAGAAGCCAAACACGGATGTCACTGAAATAGCAGCTGAAAGTGTAGAGCAGCCAGGTGGTACAG CTGAAGTTCAACCTCCCAAAGACTCAGATATTGAGGTGGTGAAAGAGACTGGAAACTCAGAGTCAGAAGAAGTGCCTGTG ACAGAAGAGAAACCAGATTCTGTGTCTACTGAAGTGGAGGAAAAGCCAAGAGAGCAATTACAAGTAGGTGAGGAAGTTGA AGAGCCTATTAAGGATGTGGAGACTAAACCTGAAACTGACAAGAGTGAAGAAACTTTGGAAAACACAATCAAAGAGCCCA TATCAATCCAGGAAGAGAAAACTGACAAAGAGGAGGAACCTACCATCACGGAAAATACTACACAAGTTTCACCAAGTGAG GAAGCTCAAGCAGCTCCTGCAAATGTGGTGGAACCTTCACCTGAAGTTCCAGAAGAGATTGCTGAAGATGGCAAGAAAGA ATCAAGCCTTACTGATGTGATTGAAGCGGTATCGAAAGAAGTAGCAGGCATTACAGAAAACCCTGAACAAGCTTCCATTG ACCAGGAGGCTAAAGCTATTGAGGAAAAGGTTGAGGAACAGATTGATGTTGCTGCAAATGATGACAAGAAGGAACCAGAA GCACCTGAATCTGTCCAAGTATCCTCCAGAGATGTAGAGGTTGAAACCAAAAAGGTTGAGGAACAGAGTGAGGCAGAGGC AGCTACAACTGAAACAGAAATTGTGAAGGTAGAGAATGTTAAAAATGACACACAAGCAGTGGATGACAAGGTTGAGGAAC AGATTGCTGTTGCTGCAAATGATGACAAGAAGGAACCAGAAGCACCTGAAGCTGTCCAAGTATCCTCCAGAGAGGTAGAG GTTGAAACCAAAAAGGTTGAGGAACAGAATGAGGCAGAGGCAGCTACAACTGAAACAGAAAGTGTGAAGGTCGAGAATGT TAAAAATGACACACAAGCAGTTGATGACAAGAAAGAAGAGAATGCTGACACAAAGGTGGATGAAATCTCCACTGCCATAA GTGAACCTGTTAGAGAAACATTGGCATCAAAGTTTAAAGATGAGGAATCTATTGAAACTGGAGTGGATAATACAGAGAAA GAACAAGTTGAGGAGCCTGTAAAAACTGAGGTTCAAGACACCAAGGAAAGTGATGTAACAAAAACATCCAAAGACCTTCC AAAAGAAACTCCAGCCAAGCCAGCTCAAAAGCAATCAAACAACATTATATCAAAGGTGAAACAGTCACTAGCAAAAGCAA AGAAAGCTATCACTGGGAAATCTCCATCCTCCAAGAACCTATCCCCGGAGGCCAAGGGAGACATTCAAGTCAAATAATGG GACAGATGCAGAATTTACATGTTTGCTTCCTTTTTCATTGTTGGTGTGCATAGCATTTATAGCGTACAAGTTGGTTTCTT CTATTCATTATTATTTTGTTTTGAATTTGTTTGAATGCAAGGAGGTGTGCAGAGTGCAGTGTATATAGAAGATGATCTAG GCCATGCTTAGAGGATCTAGGCCATGCTTTAGGCAGTACTGTAAAATTTGATTGTTTTATTCTGCTTGATTCTTTTGGAT ATATGCATTGTATTCATGATTGTCGTGAGTAAACAATGGAAGCCATTTTAACTTCCATGTGTTAAAATGACTGGTTTGTA AGTTCTGTAAGATGACCTCGTGATGATCTAGTATTGATTGTTTACTACACAAATTGTTTCCATCCATATGTGTCAATTGT GCTTAGTAACTATAGGAGCTTCCTCTAAACACAACAAGATTCTCTTCACTAAGATAATTGACTATTTAAGGTTAATTCAC CAACCTAAGAAATTATTGCCAATCATGTAATGCTATCGGACTCTCTTCCCTTTTTATACAGAAATAGGTGAAAGAGAGAC AGGAATATACCAGAGAAAACTGACGTCGACACAAGGTTGTCTGACTAGATGCTACTCAGCCATTGATAATCATGATCTAT CAAAACCGAGAGATTCTAACCTCGTGTCTTCTTCTGGACTGAGATCCGACCAACTCACCCAGAGCCATTACGCCGGTCCA GAATATTAAGGCACAAACATAATGGGTTAGCTTCAGACCAGACAGGAGGAATACCATGTTTCCATTAACCTAACCAGCTA ACTAGACTACTTTAGTTAAGTTCTTAGAACTATGGTTAAGTTGTTATGTCATGTGGCCAATGAGTTATGTCACGTAGGCA TGCAGTTATCACCTAGCAACTGAAGAGATGATGACGAGCCAACAGATATAACTATAGTCTTTCCAAGAATAAATAAGGTA GACTCTATGTTCTCTATTGCTCTTCC
CDS sequence (LotjaGi5g1v0234400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTGAGACTGTTGTATCTGATCATGCTTCTACAACTGATGAGAAATTTGTGAAGATTGAAAAGGACGAAGCTCT TGCAGAAAAGATCGCTTCTTTAGCCAACGAAGATGGAGTCGAACAAGACAAGCCTGAAGATGCACAAGATCAAGCTACCC CTTCATCCAATACAGAAGGAGATGAGGTGAAGGCTGAGCTTGCTGCAGCTGAGATTGAGAAGCCTGATGATTCTCCTGTA TTAGAGGCTTCTGCTGAAGATATTAATCTGAAACAAGACAATGTTGAGGATGTACAAATTCCAGAAGCCCCTTTCTCTAA GACAGAAGAAGAATCTGATAAGAAACTTGAGCCTGAAGTTACTGTAGACTCAACTGATGATTCTGTGCCATTAGAGTCAA ATGTTGCAGTTGCCGACACTCTTGAAGAGGAGAAGGAACTGATTATTGATTCACAGACTGGTAGTATCACAGAACCAGTA CATGTTGCAGCAGATGAGCCACAATCCACTGAACCTGCTGAGAAGGAAACACCACAGGAGCAAGAAAAGGAACCTGTGGA AACAGATGAAGAGAAGCAACTCGAGACGGCTAAAATTCTAGAAGCACCAGCTGAAACCTTAGAAGAATCAAGTGACGTTG CTGAGAATAATCCTCAGAAAGAACCTGAGGTGGTGGAAGAAGCTAAAATTGTGGAAACAGGTGTCCAAGAGGAGGTGAAG ACTGAACCTGAACCTGTGGCCACAGAAAAAACTGAACCAGAACCGGAATCTGAAGAAATATCACAAGTGGCTGAGGAACC AAGCACAATTGCAATTCCAGAACCACAAGAGGCAGAGCAACCAAGCACAGTTGCAATTCCAGAACCCTCAGCTGAAGCAG ATGAGAAACTGGGGGAAACCATAGAGGAAAAAACAACGGAAGGGACATTGGAAGAAACCGACAACAAGGATGTAGAGCCT GCAGAAACTGTGAAAGAAGAGCCTGTGATTAGTGCTGAAGTTGAGGAAAACAAGAAAGAACCAGAAGAGCAATCATTGGA ACAAAAGGAAGAGGAGCAACCAAACACATCAGCAATTTCTGAAAACTCCACAGAAACCGGTGATGCCATTGCCATAGAGG AAACAACAAGAGAGCTAGAATTGGAGGTAGAGGCATTGAAAGAGACTAACAACTTAGAAGCAGGCCCCGAAGAAACAGTG AAAGCAGAGAATGTGGTTACTGCAGTTGATGAAAACCAAATTGAACCAGAAAAACAACCATTCACACAAGAGGAAGAAGA GAAGCCAAACACAGTTATCACTGAAACAGCAGCTGAGAGTGAAGAGAAGCCAAACACAGTTATCACTGAAACAGCAGCTG AGAGTGAAGAGAAGCCAAACACAGTTATCACTGAAACAGCAGCTGAATGTGAAGAGAAGCCAAACACGGATGTCACTGAA ATAGCAGCTGAAAGTGTAGAGCAGCCAGGTGGTACAGCTGAAGTTCAACCTCCCAAAGACTCAGATATTGAGGTGGTGAA AGAGACTGGAAACTCAGAGTCAGAAGAAGTGCCTGTGACAGAAGAGAAACCAGATTCTGTGTCTACTGAAGTGGAGGAAA AGCCAAGAGAGCAATTACAAGTAGGTGAGGAAGTTGAAGAGCCTATTAAGGATGTGGAGACTAAACCTGAAACTGACAAG AGTGAAGAAACTTTGGAAAACACAATCAAAGAGCCCATATCAATCCAGGAAGAGAAAACTGACAAAGAGGAGGAACCTAC CATCACGGAAAATACTACACAAGTTTCACCAAGTGAGGAAGCTCAAGCAGCTCCTGCAAATGTGGTGGAACCTTCACCTG AAGTTCCAGAAGAGATTGCTGAAGATGGCAAGAAAGAATCAAGCCTTACTGATGTGATTGAAGCGGTATCGAAAGAAGTA GCAGGCATTACAGAAAACCCTGAACAAGCTTCCATTGACCAGGAGGCTAAAGCTATTGAGGAAAAGGTTGAGGAACAGAT TGATGTTGCTGCAAATGATGACAAGAAGGAACCAGAAGCACCTGAATCTGTCCAAGTATCCTCCAGAGATGTAGAGGTTG AAACCAAAAAGGTTGAGGAACAGAGTGAGGCAGAGGCAGCTACAACTGAAACAGAAATTGTGAAGGTAGAGAATGTTAAA AATGACACACAAGCAGTGGATGACAAGGTTGAGGAACAGATTGCTGTTGCTGCAAATGATGACAAGAAGGAACCAGAAGC ACCTGAAGCTGTCCAAGTATCCTCCAGAGAGGTAGAGGTTGAAACCAAAAAGGTTGAGGAACAGAATGAGGCAGAGGCAG CTACAACTGAAACAGAAAGTGTGAAGGTCGAGAATGTTAAAAATGACACACAAGCAGTTGATGACAAGAAAGAAGAGAAT GCTGACACAAAGGTGGATGAAATCTCCACTGCCATAAGTGAACCTGTTAGAGAAACATTGGCATCAAAGTTTAAAGATGA GGAATCTATTGAAACTGGAGTGGATAATACAGAGAAAGAACAAGTTGAGGAGCCTGTAAAAACTGAGGTTCAAGACACCA AGGAAAGTGATGTAACAAAAACATCCAAAGACCTTCCAAAAGAAACTCCAGCCAAGCCAGCTCAAAAGCAATCAAACAAC ATTATATCAAAGGTGAAACAGTCACTAGCAAAAGCAAAGAAAGCTATCACTGGGAAATCTCCATCCTCCAAGAACCTATC CCCGGAGGCCAAGGGAGACATTCAAGTCAAATAA
Protein sequence (LotjaGi5g1v0234400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATETVVSDHASTTDEKFVKIEKDEALAEKIASLANEDGVEQDKPEDAQDQATPSSNTEGDEVKAELAAAEIEKPDDSPV LEASAEDINLKQDNVEDVQIPEAPFSKTEEESDKKLEPEVTVDSTDDSVPLESNVAVADTLEEEKELIIDSQTGSITEPV HVAADEPQSTEPAEKETPQEQEKEPVETDEEKQLETAKILEAPAETLEESSDVAENNPQKEPEVVEEAKIVETGVQEEVK TEPEPVATEKTEPEPESEEISQVAEEPSTIAIPEPQEAEQPSTVAIPEPSAEADEKLGETIEEKTTEGTLEETDNKDVEP AETVKEEPVISAEVEENKKEPEEQSLEQKEEEQPNTSAISENSTETGDAIAIEETTRELELEVEALKETNNLEAGPEETV KAENVVTAVDENQIEPEKQPFTQEEEEKPNTVITETAAESEEKPNTVITETAAESEEKPNTVITETAAECEEKPNTDVTE IAAESVEQPGGTAEVQPPKDSDIEVVKETGNSESEEVPVTEEKPDSVSTEVEEKPREQLQVGEEVEEPIKDVETKPETDK SEETLENTIKEPISIQEEKTDKEEEPTITENTTQVSPSEEAQAAPANVVEPSPEVPEEIAEDGKKESSLTDVIEAVSKEV AGITENPEQASIDQEAKAIEEKVEEQIDVAANDDKKEPEAPESVQVSSRDVEVETKKVEEQSEAEAATTETEIVKVENVK NDTQAVDDKVEEQIAVAANDDKKEPEAPEAVQVSSREVEVETKKVEEQNEAEAATTETESVKVENVKNDTQAVDDKKEEN ADTKVDEISTAISEPVRETLASKFKDEESIETGVDNTEKEQVEEPVKTEVQDTKESDVTKTSKDLPKETPAKPAQKQSNN IISKVKQSLAKAKKAITGKSPSSKNLSPEAKGDIQVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 448 | 448 | 2.5E-120 | – | |
| MobiDBLite | 30 | 48 | 19 | - | – | |
| MobiDBLite | 30 | 133 | 104 | - | – | |
| MobiDBLite | 64 | 81 | 18 | - | – | |
| MobiDBLite | 103 | 122 | 20 | - | – | |
| MobiDBLite | 149 | 373 | 225 | - | – | |
| MobiDBLite | 168 | 198 | 31 | - | – | |
| MobiDBLite | 214 | 257 | 44 | - | – | |
| MobiDBLite | 292 | 350 | 59 | - | – | |
| Coils | 332 | 352 | 21 | - | – | |
| MobiDBLite | 351 | 370 | 20 | - | – | |
| Coils | 369 | 392 | 24 | - | – | |
| MobiDBLite | 408 | 628 | 221 | - | – | |
| MobiDBLite | 417 | 432 | 16 | - | – | |
| MobiDBLite | 433 | 462 | 30 | - | – | |
| PANTHER | 442 | 672 | 231 | 2.5E-120 | – | |
| MobiDBLite | 500 | 588 | 89 | - | – | |
| MobiDBLite | 640 | 710 | 71 | - | – | |
| MobiDBLite | 654 | 704 | 51 | - | – | |
| PANTHER | 684 | 917 | 234 | 2.5E-120 | – | |
| MobiDBLite | 722 | 771 | 50 | - | – | |
| MobiDBLite | 722 | 917 | 196 | - | – | |
| MobiDBLite | 782 | 805 | 24 | - | – | |
| MobiDBLite | 819 | 870 | 52 | - | – | |
| MobiDBLite | 872 | 886 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0234400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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