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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0236800 |
| Transcript ID | LotjaGi5g1v0236800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcriptional repressor NrdR; TAIR: AT2G46940.1 fold protein; Swiss-Prot: sp|Q05944|HSP70_HYDVU Heat shock 70 kDa protein; TrEMBL-Plants: tr|V7D166|V7D166_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0236800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54467376..54469618) extracted from Lotus japonicus Gifu genome v1.2.
CTACTATTGTTCTAAGCCTTATCATGAAATGAGAAACGTATAATGATTCAAAATACCCAACACAATTTCAAACGCTGCTC CATTTGCCTCTTTTTCTCTTCTTAATTCCCCTTCTCCTCTCACACACTGCCACCATAACACAATTAACCACCAACACTCA CTCTGCTATAGTACCTTGCCTACCTTCTTGTTTTCTTCACTTCACTTTTTCTTTTGGAAAAAATACACAATTACTGGTAT ATGCACTACACCATGAATGACCACATGGCCTTTCAGCTTCACCCTTCTTTGCAAGATGAAGACTTTGAAAATGATATTGG TGATCATCATCATGATCATGATCACCATCTGCATCCCCACAACTTGTCCAGGCTTTCTGTTTGTACCAGCAGCACAGTGT GTGGTGCTGATGATGATGATAATTTTGATGATGCTTTGGCTGTGGACTTGTCAGGTATGTCAATTGAGAGTTTGGAAGGG GAAGGTGATGATGCTGATGGGGAGTTTTCTTCTGATGGCTCTGACTCTGAAAATGAGTTGAGTGGTTTCTGTTATCATTT GAATCAGACTGTGAAGGACTCTGCTAGTGACAATGAGGGACAAAAAACAAAGAAAAGGAGAATCAGAAAGGAGACATGCA TGTGGAACAGTTCAGAGAAAAATAGGAGCAATATTGATGAGAAAGAGGAAGAGGAGCATGTGGTTAAGGGAATGCGTCGG GAAAGTGATCGAAATGGGAGCACATGGGTGATAACTAGGCCTAAAGGTGGTAGGAGATCACTATGCATGGATTTGGAGGA AGTGAAGGCTTGTAAAGATCTTGGCTTTGAATTGGAAGTGCCTTCTCGTCTTTCTGTTTCACTCTCCAATTCCACACTTG ACACTAGCAGTGGTGGTTCTTCACCCATCACCAATTGGCGCATCTCTAGTCCTGGTAATTTTTCAACTCTTTTTAGTTAA TACTGTTCTTACTGCTTAGATTCACATTTTTCATTCTAGGAATGATTCTAAGTTTGAAGCTCTCTTCAGACTGCATGTTT GGAAACACTTCTAATTCTAGGAATAAGCTTAAGTGTTTCATAATTGATTATGATAAAAGAGAAGTCGATCCAAATATGTT GAGGAATTCTAACCTTACGTGCCTAATTGTGTATCTATCATTGTTCCAAGCACACAATTGTAACTAAACTACACACTAGA GTCACTAGGCTAGACTAGATTCTGCTTAGGGCTAGCCACTACTCCAATTATAACTCAAGTCTTTCAATAGCACATTGACA TTACTTATTCTAACAGTTTTTCATAGGGTGATCAATTCATGATTAATCTGAATTAAGCAACAAGAATTAACTGATCTTTC TAACAGGTTTTCTCTCTTTTTCTTTTCTCCCAAACTTTGTAATTCAGGTGATGATCCAAAAGATGTGAAGGCTCGGCTAA AAATGTGGGCACATGTGGTTGCAGCATCTGCATCCAAATACTGCACATGACTTGAGTGCTAATTTTGTCTCAAAAGTCCA TTGCTTTTCCATGGAGGCTGTAAATACATAATGGTAATTGTGTGATTATCTTGTGAGAAGTTTTGGCAGTATATACTAGC TTTCTTTGCTAATTATTGTTGCTTGTGATGTAGCTTGTGATGACATTAACATTAGAATCATCCAGAGTATATTCTAATTA TGCAGAAAAAAAAAGAATTTGTAGCAAGTAGCTATCCACATTAATTTATCATCTTAATTGAATGTTTCTATATTCGATTA TACTAATTTAGATGATAGATGATCAATTACATGATCCTCAGCCAAGAATGGTCTTCCATAACAATTAATGAATGCCAAAT ACACAAATTGCAATTACAAGGATGAACGTGTAAATGCCATATTTTACCATATCAAGTGACAACAAAATTTGACTCAATTA AAGACCAGATTATGGCAATTGTTGCCACAGGGGTAAGCACAGTCAATAGATTTGACAGCTTCTCGATCGAAATACCAGTC TCCAACAGCAATAGCAATTGGCTGCAAAATAAAACATTGTTATTATCTAAGAGCAATGATCATAAAGCAGAACAAGTGAA TATTTCAACAAAGGCATTCATGTCATTCATGTTGGAGTTGGACTAATAAAACTTTTATATTCAAAAGAAAACAAATCAGT TTTTTAATAGTTCTTCCCCTTCTCATGAAAAAGAGTTGGACTTCAATTTTTGTTGGTCTCTGGCTCTGTTGTTCACAGCA TTC
CDS sequence (LotjaGi5g1v0236800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTACACCATGAATGACCACATGGCCTTTCAGCTTCACCCTTCTTTGCAAGATGAAGACTTTGAAAATGATATTGG TGATCATCATCATGATCATGATCACCATCTGCATCCCCACAACTTGTCCAGGCTTTCTGTTTGTACCAGCAGCACAGTGT GTGGTGCTGATGATGATGATAATTTTGATGATGCTTTGGCTGTGGACTTGTCAGGTATGTCAATTGAGAGTTTGGAAGGG GAAGGTGATGATGCTGATGGGGAGTTTTCTTCTGATGGCTCTGACTCTGAAAATGAGTTGAGTGGTTTCTGTTATCATTT GAATCAGACTGTGAAGGACTCTGCTAGTGACAATGAGGGACAAAAAACAAAGAAAAGGAGAATCAGAAAGGAGACATGCA TGTGGAACAGTTCAGAGAAAAATAGGAGCAATATTGATGAGAAAGAGGAAGAGGAGCATGTGGTTAAGGGAATGCGTCGG GAAAGTGATCGAAATGGGAGCACATGGGTGATAACTAGGCCTAAAGGTGGTAGGAGATCACTATGCATGGATTTGGAGGA AGTGAAGGCTTGTAAAGATCTTGGCTTTGAATTGGAAGTGCCTTCTCGTCTTTCTGTTTCACTCTCCAATTCCACACTTG ACACTAGCAGTGGTGGTTCTTCACCCATCACCAATTGGCGCATCTCTAGTCCTGGTGATGATCCAAAAGATGTGAAGGCT CGGCTAAAAATGTGGGCACATGTGGTTGCAGCATCTGCATCCAAATACTGCACATGA
Protein sequence (LotjaGi5g1v0236800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHYTMNDHMAFQLHPSLQDEDFENDIGDHHHDHDHHLHPHNLSRLSVCTSSTVCGADDDDNFDDALAVDLSGMSIESLEG EGDDADGEFSSDGSDSENELSGFCYHLNQTVKDSASDNEGQKTKKRRIRKETCMWNSSEKNRSNIDEKEEEEHVVKGMRR ESDRNGSTWVITRPKGGRRSLCMDLEEVKACKDLGFELEVPSRLSVSLSNSTLDTSSGGSSPITNWRISSPGDDPKDVKA RLKMWAHVVAASASKYCT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 256 | 220 | 5.9E-49 | – | |
| PANTHER | 37 | 256 | 220 | 5.9E-49 | – | |
| MobiDBLite | 77 | 98 | 22 | - | – | |
| MobiDBLite | 79 | 93 | 15 | - | – | |
| MobiDBLite | 138 | 169 | 32 | - | – | |
| MobiDBLite | 138 | 163 | 26 | - | – | |
| MobiDBLite | 209 | 228 | 20 | - | – | |
| MobiDBLite | 209 | 233 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0236800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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