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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0238800 |
| Transcript ID | LotjaGi5g1v0238800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ELL-associated factor, putative; TAIR: AT1G71080.1 RNA polymerase II transcription elongation factor; Swiss-Prot: sp|B4LMA2|EAF_DROVI Ell-associated factor Eaf; TrEMBL-Plants: tr|K7N335|K7N335_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0238800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54686004..54690414) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAACGAATCCTTGTTGCTTTTCCTCTGCGTACTGTCAGATTCGACCACACCTTAGGACCTATTTTCGTACTTTCGTT TCACCGATAGTACCGCGGTGCTCGCGAGATCGACCCTTTAACGTCCGCCAGCCACCGCCGTGTTATTGCTTCACCGGCAC GGCAATCCTCTCATTCCTCCGTCGTCTCTCCCCCCACAATTGACCCTAAAGCCATAGATTGCGCTTTTCCTTCCGCCACT CTAGACTCTCTCTTCCGGAACAAACTCGTTTCCTGCCAACCTTCATCATCACCACCGCAACCCTAACCTTCACAACCCTC CTCCCTTTGAGGGTTCAACTGCCCACACATCCAGCTCAGTCTCTTCCGTCGCCAGATCGCTTCTCAGAAGTACGACGCAC CCTCAAGCTTTACTTTCGTTGTATGTATTGCGTCTTTCCCCCTTTCTGTGCTTTTTTCATATTTCTTGTATTTGCTTGTA TGCAATTTCATAATTGCTTTGATCATGAGCTGTTTTGGGCTTTCTCTGCAATTTCTGATTACTGATTTTGATTTTATTCT AATAGGAATATGTTCATATCATGGAATTTGTTATGTTTTTCAACCATGAATTAGCAAAACCACGAATTGCACATTCTATT TCACCTTCATTGGGTCCCCAAAATTTATTAATTTTGATTTTGATGGTCATCTTCCATCTCAATGTCAACTCCTCGCAGAT GGAAATTCTCTTTGCTGATGGGAATATGCTTTGGTTGTGAAGATCTTAATAGTCTTTGTGGATTATAATCTAAAATTTAT CATTGATAGGATTGGAATCTAGTTCTAGTGTTCTACAGAACATATAGTATGTATAATTTTACTTATGGGATCGTAAATTC ACATATGATTTGTCTTTTGGGCCAACTCGGACTTGTCCCTAATTGGCCAACACATCCATTGCTAATCTCTTAATGCTGTT TATTCAGTAGCTTATTTCTTGCTTTTTAAGGACAAGTTGATGGAATGGGTACTTTGCGTGTTTATAAAAACGTTAGGGAG TGAAATACATATTTTGAAATATCAGGGACTAAATCGCATGTGACCCACACTTCAAGGTACTAATTTGCATTTCCCCCTAG TAAAAGAATTACTAGTTTTTGTTCTTTGGGACTTTGACAGCTATCTGCTAGGCTTGTAAGTTAAGCATCCTAATTCCGAA TATTAGTTTTTCTTTTTAACTATGAATGTTATGTTTGAGTTAGTAGTTATTTTGCGTGCGAAATAAATGCAAAATAGTCA AATGTATTTCTGTTTTCTTTTTCTAATGTTAACACGTTGCTTACATGAGGTGTGTGCTTTTTGGTGCCTCTTTCACCTCC AATTTCCATGATCCTTTATCCCTTGAAAACGTACTCCATTATTATTGTTTTCCTTATGATTCGGCATATTTTTTTTAGTT TTAATTATGTTGTAGATGGACTCTTGTAGAGACTAGAGAGATTGAAATAGGACGGTTAATGACACTATACAAAGTGTCCT TCTGATTGAGTTAATCTACTCATTTATTTTTTATTAAATTTGATAAAAAAAATATTCCAAACAGGCTGTATCAGGTTCCT GAACTTTTTTCCCAACATGGCCAACAAATCTAAAGAAGAGCCCAAGACTGCTCCTGAGTCAGATAGGTGGTACAATCTCA GTCTAGGAGATTCCTTCAAAAACGATTCATCTAACAAATACTGCACTCTACGATGTAAGTTACTTTAAACCTTTCTAATA TTTCTGTCTGCTTCATCAGTATCTGTTTAATCTTAGTTCCTCTAACAATAATTATTTTTGCTATGCTTTTTTCATTGATT TTTTATTCTGTTTTTTTTCCTATTTTCATTTCTAATAATTGAACTCTTGAAATATGTATAGATGAATTTAAACCAGCGTC AGTTGATAAGACTAAGCCAGGATTGCTACGCAAGACCAAAGAGAATAGGGTGTCTGTGGAATTTCAGAACAACCAATTAG GAAAACCCAAGGTGACATTTGAGGGGAATAGTGAAGAATACAAGGAAAATGATGCTGTATTGTTCTTTGATGGTGAAACT CTTCGATTGGAGCGGCTTCATAGGGCTGTAAAGCAACTGCGTCACCTACGAATGCCTGGTGAATCTACAGCTGCTGCAGC TGTGGCTGCTCCATCTGGACCAGCTTTGGATCCTCGGTCGTCCCCTGTTGGAAGGGCGATAAAACCAGCACCTGTCAGTA GGAGCTCATTTCAGGCAGTGCCAGTAAGTGCATACTAACTATCTATGGCATAACTGTTTGTTTAGAAGTTGAGTCTGTTA CATCATAAAAAATGTAGGCAGCTGGAGACTTTCAATTATAATTATGGTTATTTTTGCAACATATATTAGAATTTTTATTG TTTTTATGGAAGCGAAAAGCTTTTTGTTGTGGTGCTTTGTGTGTGAATATCATAATGCATACCCTCTTTATACCGTTATG ATATATTTAACATGTTTTTAGATAGAGATAGAATTTTACTAGAGAGGGGTGATGTAAACCTGATTGTTTATTTTTTTCAT GGAGGTACTTTTAGGTGGATATTTACATCATGGAATTACTCAATACTCAGCTATTTTTCTTGTTTTATCAACATAATTAA AGACTTTTGTGATTGAGGGAAAGAAAGTGGATTGTAGAAGGACATGAAACCTTTAAATATTTTTGAGATCAGTGTAGGTG GGTTTCTAAATGAAGCATAAATACTTGGATAAATCTTTTGGGTGTTGTCCATATCTTTTTCTTTTGGTGTGAGTTGTTTC TGTGATAATGGGAGGAAAGTAAATAGCTTATGTCTTGCGCCCTTTCTTATCTATTTTTTGCCCAATGACCTTAAATGATA TTTACATTGATTATGCACAGGTTGAGGTGGAACGCATTGATATTGGTGAACCTGAAAATACTGGTATGTATGATATGGTT ACAAGGTTTCTGAAATTGAAAATCTGAACATTGTTTTGATTTCCTAGATTAATTGATTTCCTGATAGTCTAGTTAGATGA AATGGGAGTTGCCCTTAACACAGTATGAGTTTTGCATTAGGCTCCACTTTTGGTTCTTTTCCCTTTTCCATTATGGTTCC CCTTGTGCAACATTTTCCTTCAATCAGGGCTGGGAGGATATTCATATGCTAAGTTTTTCATTTTTATTACTTGATGCTGA TGGAAATAGTCTGTTAATCTGCTTCAATCCGTGAGGAGTTATTTATTACATCAACTCCTGCGCCAAATTATTCTTTGTGC GCTTTCCAACTTTACGATATTCATATTGTTTTTGTTGCTGATTACAAGTTTTCACGACCGTTTTGGTATTTTCCGTATGT AACCAAAAAAAAAAGAGACTGTTTTGGTGGATTCTGGATATGTGCTTTGTTGTGAGTCTGTTCTTCTCAGAAATGATGCA TTCACCAGTTGATCAAATGGTTTGCAGTGGCTTTGTTACTTATCTATTGAACTCGTAGCAATCTGATGTCCTTATTATAT GACAGGCATCAAATCTGGATCTAAGAGGTCAGCTGATCATCTAACTGAGGCACCCACTGTCGCTGCTACCTCACCTGGTG CGAATAATGAAGTCGAGGAACATCGAGATATAGATATTGATGACCTTTTTGGCATTGTATCACCAGAAGATGACCATAAT GTTGAAGAAAAAGATAATGTTGGATTTGACATGAACATTCCTCAAACTGATGATGAGATTGCCGACGTGGTCGATAGTGG TGATGAGATGGACAGAGGAACCAATGCTGCCGAAGCTCTCAGAGCTCAGGTAAATGCAGAAGGTAAGGATGAGCAAACAT CTACTTCTAGCAGTAGCAGTGGAAGTGGAAGTAGTGAAAGCGGCAGCGGTAGTGGGAGCAGGAGCAGCAGCAGCAGCAGT GATAGTGAAGGCAGTGATGAAGACACTGTTAACTCAATCTGAAATTGCAAAATTGGGGGGGTCTTTCCCTTTCATCATTC ATCATTATTGTTGCAAGAATGTAATAAGCCATTCTGATTCTGAAGATCGGGAATTTTGTTAAAACTGACACCAGGGTGCT GAGGATTGTAAATTTTAAAATTAAATCTTTCCTTCTTAAATCTTATACTAGTTCTTTTATAATTTAACTAGTGTGGAACT TATGAGATGCAATCATGCAAACCACCATTATAGGTGTTGAAGATTAGTAAGCTAAACTTCAAATTTAGTATTACTTTCAT AGTTAAGTAAACATTTATTATTAACTTACCAACGAATTTACAATGATGATTAGGAGTGTATTATTGAGTAAAAGACAAAT GAATAATCATATTTCTAATAAAATGAAATGATATATAATTTGGGTACAGAAGCTTAATTCCTTGTAAACAAGCCAACTAT TCCACACAAGA
CDS sequence (LotjaGi5g1v0238800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAACAAATCTAAAGAAGAGCCCAAGACTGCTCCTGAGTCAGATAGGTGGTACAATCTCAGTCTAGGAGATTCCTT CAAAAACGATTCATCTAACAAATACTGCACTCTACGATATGAATTTAAACCAGCGTCAGTTGATAAGACTAAGCCAGGAT TGCTACGCAAGACCAAAGAGAATAGGGTGTCTGTGGAATTTCAGAACAACCAATTAGGAAAACCCAAGGTGACATTTGAG GGGAATAGTGAAGAATACAAGGAAAATGATGCTGTATTGTTCTTTGATGGTGAAACTCTTCGATTGGAGCGGCTTCATAG GGCTGTAAAGCAACTGCGTCACCTACGAATGCCTGGTGAATCTACAGCTGCTGCAGCTGTGGCTGCTCCATCTGGACCAG CTTTGGATCCTCGGTCGTCCCCTGTTGGAAGGGCGATAAAACCAGCACCTGTCAGTAGGAGCTCATTTCAGGCAGTGCCA GTTGAGGTGGAACGCATTGATATTGGTGAACCTGAAAATACTGGCATCAAATCTGGATCTAAGAGGTCAGCTGATCATCT AACTGAGGCACCCACTGTCGCTGCTACCTCACCTGGTGCGAATAATGAAGTCGAGGAACATCGAGATATAGATATTGATG ACCTTTTTGGCATTGTATCACCAGAAGATGACCATAATGTTGAAGAAAAAGATAATGTTGGATTTGACATGAACATTCCT CAAACTGATGATGAGATTGCCGACGTGGTCGATAGTGGTGATGAGATGGACAGAGGAACCAATGCTGCCGAAGCTCTCAG AGCTCAGGTAAATGCAGAAGGTAAGGATGAGCAAACATCTACTTCTAGCAGTAGCAGTGGAAGTGGAAGTAGTGAAAGCG GCAGCGGTAGTGGGAGCAGGAGCAGCAGCAGCAGCAGTGATAGTGAAGGCAGTGATGAAGACACTGTTAACTCAATCTGA
Protein sequence (LotjaGi5g1v0238800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANKSKEEPKTAPESDRWYNLSLGDSFKNDSSNKYCTLRYEFKPASVDKTKPGLLRKTKENRVSVEFQNNQLGKPKVTFE GNSEEYKENDAVLFFDGETLRLERLHRAVKQLRHLRMPGESTAAAAVAAPSGPALDPRSSPVGRAIKPAPVSRSSFQAVP VEVERIDIGEPENTGIKSGSKRSADHLTEAPTVAATSPGANNEVEEHRDIDIDDLFGIVSPEDDHNVEEKDNVGFDMNIP QTDDEIADVVDSGDEMDRGTNAAEALRAQVNAEGKDEQTSTSSSSSGSGSSESGSGSGSRSSSSSSDSEGSDEDTVNSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 319 | 319 | 6.9E-173 | – | |
| PANTHER | 1 | 319 | 319 | 6.9E-173 | ||
| Pfam | 19 | 116 | 98 | 1.9E-20 | ||
| MobiDBLite | 170 | 204 | 35 | - | – | |
| MobiDBLite | 222 | 319 | 98 | - | – | |
| MobiDBLite | 273 | 319 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | ELL-EAF complex | A heterodimeric protein complex that acts as an RNA polymerase II elongation factor; the complex is conserved from yeast to humans, and is present in S. pombe, but absent from S. cerevisiae. |
Expression pattern of LotjaGi5g1v0238800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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