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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0247100 |
| Transcript ID | LotjaGi5g1v0247100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cotton fiber-like protein (DUF761); TAIR: AT5G56980.1 cotton fiber protein; Swiss-Prot: sp|B8IYW9|GCSPA_DESDA Probable glycine dehydrogenase (decarboxylating) subunit 1; TrEMBL-Plants: tr|A0A1J7GLK9|A0A1J7GLK9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0247100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55556340..55557774) extracted from Lotus japonicus Gifu genome v1.2.
CAGTTGCAAAGTCATCAAAGAAACAAATACCTTCCCTCCTTCCTTCTCTCTTCCACCCGAATCCTTCCCTGCCTCACACA TTCCTTTCCTCTGTACTTACCATTCTCTCTTCCCTCCTCCTTCCTAAATTAGAATCATTCATTTCCTACTAACTATAACA CCCAATATAAGGGGCTATTTTCCTCATTCAGAAAACCACCATGCCTCAAAAAGCCACACCTGACCCAAAACCTGGTTCAT TTCACCATCACAACAACAACAACACTGTCTCTTACCTCACAACCTGCGCTGGCCATAACATAATGCTTCCTGAATTTTCT CATCAATATATAACCTTCTTTTGCTTCCTAAATTTCCCTCAACACTGTACCTCTCTCTTTTCTTCCATGCTCATAGCAGG AAGAAGCACCAAAGGTGATGACAAATCAATCAATCAATCAGTAACATGTTAAAACCTGAAATTCTTCCTTAAAATTCCCT CGTCCTCCTCGCTCAATCGCTCTCTTTCTCCATTGTTTCCAACCTTGTTGTTCCATTAATTATTCAATGGCTACAGAAAA CTCCATCATCACCAACATTAGTACTCCAAAACCACAAACAACCCTGGACAATAACGAACCTGCAGCTAATAAAGCCAAGA ACATTTTTAAGGTGGCGCTGTTCATGATGCGTTCGCAAAAATCGCGAGTGGTTCCGGTGGATGAGGAGTCCAAGAGCGTG TGGAGGAAGCTGGTGGGGTCTATGAGGCCGTTGCACCTGCAAAGCAACAATTCTCCACCGGCTCAACCCAAGAATAATAG CAACCGGAAGCTGAAGAAGATGGTCACCATGCCGTGTAAAAGTGTTGCTAATTATTCCCTCAGCGAGGATGGGTTGGAAT ATGCTGCATCTGATTTTACTAATTCCCCGTCTCCATTACATCGCCGTTACGCTTCGGCCATTGGGCTGAGTGAAATGGTG CCCGAGGACGAGGAGAATGAGAAGGAGGAATATAATGTTATTGTTGAGAATGAGAATGAGGAGGAGGAAAGTGATGAAGG CGATGGTAATGGTGATGACATGATTGATGCCAAAGCTGAGGATTTTATTGCTCAGTTTTACCAGCAAATGAGGTTGCAGA GGTTGGATGTGGTGGATAGTCGTTACAATGAGATAAGTCAGAGGTCATTAGGGTTATGATATGATCGACCCATCTGCAAA TCCTGATCAGAGCTATGATTCACTCATATTTAACTATGCTACATGCATAGACAAAATCTTTCTTTTTAGTTTTTTGTTGT TTTTTTTCTTTGTAGAAATGCAGGACTCGAAACCTTCTAAGGATGATGAAGATTCTGCATTGGTTTTTGTGTTTCATTCT TTGTCACTCCAAACAAGTTATGCAATGTAATCATGAGTATGGAAATTATAATATTATCATAACATTTTTAGATGA
CDS sequence (LotjaGi5g1v0247100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAGAAAACTCCATCATCACCAACATTAGTACTCCAAAACCACAAACAACCCTGGACAATAACGAACCTGCAGC TAATAAAGCCAAGAACATTTTTAAGGTGGCGCTGTTCATGATGCGTTCGCAAAAATCGCGAGTGGTTCCGGTGGATGAGG AGTCCAAGAGCGTGTGGAGGAAGCTGGTGGGGTCTATGAGGCCGTTGCACCTGCAAAGCAACAATTCTCCACCGGCTCAA CCCAAGAATAATAGCAACCGGAAGCTGAAGAAGATGGTCACCATGCCGTGTAAAAGTGTTGCTAATTATTCCCTCAGCGA GGATGGGTTGGAATATGCTGCATCTGATTTTACTAATTCCCCGTCTCCATTACATCGCCGTTACGCTTCGGCCATTGGGC TGAGTGAAATGGTGCCCGAGGACGAGGAGAATGAGAAGGAGGAATATAATGTTATTGTTGAGAATGAGAATGAGGAGGAG GAAAGTGATGAAGGCGATGGTAATGGTGATGACATGATTGATGCCAAAGCTGAGGATTTTATTGCTCAGTTTTACCAGCA AATGAGGTTGCAGAGGTTGGATGTGGTGGATAGTCGTTACAATGAGATAAGTCAGAGGTCATTAGGGTTATGA
Protein sequence (LotjaGi5g1v0247100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATENSIITNISTPKPQTTLDNNEPAANKAKNIFKVALFMMRSQKSRVVPVDEESKSVWRKLVGSMRPLHLQSNNSPPAQ PKNNSNRKLKKMVTMPCKSVANYSLSEDGLEYAASDFTNSPSPLHRRYASAIGLSEMVPEDEENEKEEYNVIVENENEEE ESDEGDGNGDDMIDAKAEDFIAQFYQQMRLQRLDVVDSRYNEISQRSLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 25 | 205 | 181 | 1.6E-52 | – | |
| PANTHER | 25 | 205 | 181 | 1.6E-52 | – | |
| MobiDBLite | 68 | 89 | 22 | - | – | |
| MobiDBLite | 153 | 168 | 16 | - | – | |
| MobiDBLite | 153 | 174 | 22 | - | – | |
| Pfam | 170 | 203 | 34 | 1.5E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0247100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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