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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0255000 |
Transcript ID | LotjaGi5g1v0255000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF1635 family protein; TAIR: AT5G22930.1 enabled-like protein (DUF1635); Swiss-Prot: sp|Q8ILR9|YPF17_PLAF7 Protein PF14_0175; TrEMBL-Plants: tr|I1NHT4|I1NHT4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0255000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56397972..56399801) extracted from Lotus japonicus Gifu genome v1.2.
TACCTAAAAAGGCTTAATATGAAGAGGATTAGGTTCCAAGTTGGACTCTTGAAATGAAACCACATTCCCTCTTCATACCC TCCACCGAATTTTTAGTCCTTGTAGACATGCATAGTGCCTATTTGTATATATAAAAGCTACATGCACTTACCATTTGGCC TTTGTGCTTTAATTTTTTTTGGCCTTTTCTATCCTTTTTTCAACTCCATGCCCCCCTGAAATAAAGTTAAGAGGAAGCAA GCATAAAAGGAAAGTAGGCACTGCAATATTTCTGACTTAAGGATCCAACACAGATATTCTGCCTCCCTCATCTCTGAGTG AGACCACTGCAACAAAATGGAATATGAATGTAGCCCTCTTAGCTGGGAGTTCTATCACCAAGAAGAGGTGTGACATGTCT ACTTTGCTAAATTTCTCTGTCCATGTTTAGAAAATTTTCTTATTCTAATTTTAGAATCAATTCTGGGGAGAAGCTTCTAT GAATAACTTTTGAGAAACATAATTGATTCTGAGAATACAGAAGTTTATCCAAACATGTTATTTGTGAAATCTTTTTTTTT AAATTGCTAGCTTTTATGGGCATTTGCTTAGTTAGTATTTTTGTTTCATTCTTGAACAAGCAGGGGTTAGAGGATTTGAG GCATTCTCTTCTGTACACAACCTTAGAGCTAGAGGCAACTATTATGTCAGCTAAGGAGGAGATTAGCAGAAGAGAATGTG AGTTAATCCATGCCAATGATCTTTTAAGCAGGGTCATCAAAGAGAGAGATGAAGCTCAAGCAAAATGCCAGAAGCTAATG CTGGAAAAACTAGACCTCCAACAAGAACTTCAACAGAAGCAGCATCAACATCAAATTCAAAGGGATACTACATCACAAAG TGAAGATGAGTTACAAGGTGGATTCTCTGAGAAGCATTCTGCATCAGCTGGTGGTTCTGATTCTGAAGAAAACAGCATCA TCATGCCTTCAACTCCACTGGAAGCAGTGCTGGAATTAGCAGGAAAGAAGCCATTGCCTGAGAAAGGGAAGCTCTTGAAG GCAGTGGTGGAAGCAGGACCATTGCTGCAGACACTTCTCCTGGCAGGACCACTCCCTCAGTGGCAGCATCCACCGCCACA ACTCAATTCCATTGAGATTCCTCCAGTGACCATTTCTTCTCCAACAGAGTCTAGCAAGACTCTCTCTTTCAGCAAGAAGA GGGACCTTGTTCTCTCTTCAGGCTCTGACACCCCTGATTCAAAGTGTAGAAAGGTCATTTAGCACTCACCAACACCAGGG TTTTAAATTGTGATTGCAGTCGCGGTTGCAAGGACTTCAAAACCCCTTACAGTCGCGATTGCAGGTCGCAAATTAAAACC CTGTTAGCACCTTCCCCCGCTTCCCGTCATTTCCTACTACCACACCCATCTTTTTTCATGATGTTTCATCTGCAAGGCAA ATCAAGATGAAACAAGTGGAAAGTGTGCATCATCTCAACTTAATTTGTCCCCAATTCAACCAACCCTGACCTACTTTTTT CATGCTGGAAAAGAGGTTCAATTGTTTAGCATTTTATGTTTCCCTAATCTTTTCTAATTATGTATATATAAGGTTAAATG AGGTTGAATTCTGACAAATTTGTTGGGAAATGAGTAACCTCATCTAAGTTTATGACACAATTTTGTACTTTGGTAGACAG GGGGTGGTGTAACCAAGCTTCAAATGGCTTAGGTTTAGATTTTAGTTGAAGGCTATTGTTGTTGTGCTTGTGTTATTTTC TAAGTTGTTGATTTCTCTGCTTAGTAGAATAATGGTTCTTGAAAATGCGCAGGACCAGCAAGCAATCATA
CDS sequence (LotjaGi5g1v0255000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATATGAATGTAGCCCTCTTAGCTGGGAGTTCTATCACCAAGAAGAGGGGTTAGAGGATTTGAGGCATTCTCTTCT GTACACAACCTTAGAGCTAGAGGCAACTATTATGTCAGCTAAGGAGGAGATTAGCAGAAGAGAATGTGAGTTAATCCATG CCAATGATCTTTTAAGCAGGGTCATCAAAGAGAGAGATGAAGCTCAAGCAAAATGCCAGAAGCTAATGCTGGAAAAACTA GACCTCCAACAAGAACTTCAACAGAAGCAGCATCAACATCAAATTCAAAGGGATACTACATCACAAAGTGAAGATGAGTT ACAAGGTGGATTCTCTGAGAAGCATTCTGCATCAGCTGGTGGTTCTGATTCTGAAGAAAACAGCATCATCATGCCTTCAA CTCCACTGGAAGCAGTGCTGGAATTAGCAGGAAAGAAGCCATTGCCTGAGAAAGGGAAGCTCTTGAAGGCAGTGGTGGAA GCAGGACCATTGCTGCAGACACTTCTCCTGGCAGGACCACTCCCTCAGTGGCAGCATCCACCGCCACAACTCAATTCCAT TGAGATTCCTCCAGTGACCATTTCTTCTCCAACAGAGTCTAGCAAGACTCTCTCTTTCAGCAAGAAGAGGGACCTTGTTC TCTCTTCAGGCTCTGACACCCCTGATTCAAAGTGTAGAAAGGTCATTTAG
Protein sequence (LotjaGi5g1v0255000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYECSPLSWEFYHQEEGLEDLRHSLLYTTLELEATIMSAKEEISRRECELIHANDLLSRVIKERDEAQAKCQKLMLEKL DLQQELQQKQHQHQIQRDTTSQSEDELQGGFSEKHSASAGGSDSEENSIIMPSTPLEAVLELAGKKPLPEKGKLLKAVVE AGPLLQTLLLAGPLPQWQHPPPQLNSIEIPPVTISSPTESSKTLSFSKKRDLVLSSGSDTPDSKCRKVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 212 | 212 | 5.3E-81 | – | |
PANTHER | 1 | 212 | 212 | 5.3E-81 | ||
Pfam | 18 | 204 | 187 | 1.6E-65 | ||
Coils | 58 | 92 | 35 | - | – | |
MobiDBLite | 88 | 107 | 20 | - | – | |
MobiDBLite | 88 | 129 | 42 | - | – | |
MobiDBLite | 115 | 129 | 15 | - | – | |
MobiDBLite | 196 | 229 | 34 | - | – | |
MobiDBLite | 196 | 222 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0255000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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