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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0270400 |
| Transcript ID | LotjaGi5g1v0270400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BLOC-1-related complex subunit 8 homolog; TAIR: AT2G39170.1 MEF2BNB-like protein; Swiss-Prot: sp|Q54JC6|BORC8_DICDI BLOC-1-related complex subunit 8 homolog; TrEMBL-Plants: tr|I1LCW9|I1LCW9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0270400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58369917..58373455) extracted from Lotus japonicus Gifu genome v1.2.
GAACAAATACCACCTTGATTTTCAGATGCTTGTTACAATTCTTAGTCTATATCAATGAATAAGGTCCTGATTTTTGTCTC TTAAACTCAATTTTTTATTTTTGCCCCTACCCATTTGCAAAACCCAACTCCATTTTTGTTTACTTGCAATTTGGATTCTT TCTTCAATGTAACCTGTTTTTTTGTTGTTGCTGTGTCTCCTATATTATATGGTGATTGAGATGTAATTACTAGTCTCTTG GCATCTGTTTCATTTTTTCATGTATGTTCAAGCCGATTATTTGTCCCCGTAGGATAGTTCAAGTGGTAAGAGTAGGGTAC ATATGGTGTCCAGGGATCAATCCTGACAGGTGTAATTTATCTTTCCGATGTACAAAAAAAAAAGCCGATTATTTGCTCTT GCTTGCTTGGGGATAGGGTTCTGTTTTGTGGCCTTTCTTTCTTATTGGTGTTTTCTGCATGTTTTTTTTGTTTTTTGTTT TTTGTTTTAAAGATGTTTGATTAATTGATGTGCGGAGAGGTTTGAATGCTCGGTCGACTTTTTTAGCCTATTGGGCTGGC TGTTTTCTTTTTGGTCTATCTGTTTAAATGGTGAGTTTTCTTCAATCTCCAGCTAAAATTATTCTTTTATAGAACTTGTA GCTAGAACATATGCGAAAATTCTTTTGAGTTCATTATGCGTTCATGTAAGCGAGTGTGAAGCAGAGAATTATGGGATTGG TCGATGTGAAGTAGTAGCCTACTAGGAAATTGACTTTTGGGGTTATCACTTTGTTTAACAAACATGAATTTGAATAAAGG AAGAGGACTTGGGTAAGGGATGGAGACAGAAACTGTACTATGATGCTAAGGGAGTTTGAATGTCTCTCCAGTTTCCACCC TGGTTATTTTGGTTTCTGCTTGTAGATTTCATCTTCGGAGCATAATGCTTTTTGAACGGTTCAATTTGTCTGCAGGACCC AGTAGAATAAACCTTAACTAAGATCCCATGTGCTCTCATTTGTTTGTGTTACATTAGTTTTTAGATTCATAGCCATTGTT TGTGTTCGCCTGATTGCTTGAAATTCAAAGTTGTTTGGCTTTTTATAAGTAGGGAAACCAGGCATGCTCTCCACTTTTGC AAGATTTCTGATTTGTTCTGGAGGGATTTTAAAAAGGAAAGTGAGGTTATGTTTCTGTTTGGATATGCTTCATTTGCCAT CATTTGAACTTTATAAACAGAACCTCAAGAAGTTCCAAAAGTAGTTTTAAGTTTTCTTAGTTCGTTGCACGGCTTTTTCA AGGGAATTCTATTGGTAAATATTTTTGCGCACTAGGGGTCCAAATTATTTTTATTCAGAGATCTGAAGTTTTTCCTCTCA TTATGCCATGTTCTGTCTTTTAGGAGGGTTACTTGTCTAATAGATTGTAACTTGGTTCCTCATTCCTAAGCAGGGAGTTG TTACTTTAGTTTCAAAAAATGGTGCTACATTGTTTATTTTCATCCTTAATCCCTTACTATGGTTGGACCTATTGCTTAAT TTTTAGACCTGGCTTCTCTAAACTCTCACTTTAGGGAGGAAAATAAGCATTTCAACCATTGATAACAAATCAATGGTTGA TAATGACATGCATAATAAATCATAGATTTGTTAAAATTTACTTAGTTCCTTGATTTTCTCATTAATGGTTGGATGCTTTG TGACGCCTTTCTTTTCTCTCATTTGTTAAATCCTTTTTTTATACCTAGAAGTCTATTATACAGTAAACTTTACTTTTATT CAGTAACTACCCATTGATTGGAGACTGGAGTTACTAAACTGGTTTGACTCAATGAACTCATTCATCTTAAACAGCCACAT ATATCATTGGAGATTGGAGAAAAATGAATTATTCTTTCTCAGGGAGAAAAATAAAAGAACCCTTATGCCATGTGCCAACA GTTTTTGCTGTTTTAACTTATATACTGCATATGCTGCTAAGTTTATTCAACAGTTGTTAGGGCGTAGGAGTGTTAGTGCC AAAAGTGCACGTCATTCTCTCATGAGTTAGGATAAATGGAGAAAAAGGAAATTGATAATTATTGCTACTTGAGTTTGAAT ATTTGAAAATAATGTACTTTCACACTATTCACCGGAAGTTCTTAGCTCCTCCCTCCCCATTCTCTTATGTGCTTTAGTTC CCATTTTTGTTGCTGGAAAGATGTTTGGTTGGGAGAATCTTCTGTTTTTGAATATTTTCATCTACCTTTATCATCTCTCT ACCTTTATGATCCATTTCATTGAAGCTGTTAATCTGCTGCAATTCTTTTGGGACTGACTAAGAATGCCATGTGTCAATTC TTTTCCTTCAGGAAGATGTATGAGTTCTCTAATGTTGATGGTTTTCTGGAGATAAGTGAATCCATGGCAGAGATGATCAA GTACGTGGCTAATGAACCATCTGTTGGGCTTTTCTTTATCCAACATCATGCTCAGAATGCTGTGCCCAATGTCATCAAAG TTAAGAAAAATCTTGTTGAGAAGTCTCATGAAACAACTTTGCAGACACAAGATTTTGAGGACTCCATTGCAATGGTTCGA TCAATGAAAGAGTGCGGATCTCCCATAGCTAATGGGATGATAGGAGAGATTAAAAAAGCTATGGTGACTATGAAAACAAA ACAACCGAAAAGAGGGTTAATCCGTCCCTCGGCATCAGGTTCTCAGACAGAAATTGCCAGCTTTTGGGGTAAAACTACAT TTCATGCTCAGGAAGGTGATGAAAAAAGGAGCAACTACTTTTCAAATGTTTTCAAGTCAGCAAAAAAGAAGGTTAACAGT CTCAATTGGCAGCAACCTGATGCTAGGGGATCAATAGATTCCAAAGGTGAGAAGCCACAGGTGTGTCTTGATTCGCAATT ATCAACCACATCTGCTAGCATTACTTCATCTTTACAGGGTACTGAAACTGATGAGTTACCCATGTCAAGCCAGGTTGGAG GTGAGTCTAAATATGAAGAGACAGATGCTAGTGATATTAGTGTTAAGTTATTGTCAGTTTCAGAAAGATATGATGACTTC AAAGCTAATAAAGAAGCTAAGCTAGAGGAGTGGCTGGAAGGAACCAGCAACCTTGATGATAATTGCATTACAGGTGATGA AAAAAGGTGAGTTTGGCTACACTTCATAAAAAGTTTTAGCTAGTATATACTTACCGATACCCCCGACAAACACCCAAAGT GAGAAAGGAAGAGAAAAGAGAGAAGTTATGGAAGTGATATATGATATGATTTGGTAAGAAGAGAGAAAAATGAGGTGTCT TTGAGTGTCCAAGTATCATTACTGGCATACTTTTGTGTAATATTTTAACTGTCTCTGAATATTTGATTATACATAAAATT ATTTGTAATGCTGTAAAATGTTCTGTGAACAAGCATGATAATGTATTGGGTTAATCACATATGACCCTGCATTCCTTCCA CGGTTCTACCGAAAACATCACTATCAGCTTCCTTATGAGGTGCAATGTCGTTGTAATTAGAAGCCATACCAACATCTATG ACTATTTCTTTGGTGTTTT
CDS sequence (LotjaGi5g1v0270400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGAGTTCTCTAATGTTGATGGTTTTCTGGAGATAAGTGAATCCATGGCAGAGATGATCAAGTACGTGGCTAATGA ACCATCTGTTGGGCTTTTCTTTATCCAACATCATGCTCAGAATGCTGTGCCCAATGTCATCAAAGTTAAGAAAAATCTTG TTGAGAAGTCTCATGAAACAACTTTGCAGACACAAGATTTTGAGGACTCCATTGCAATGGTTCGATCAATGAAAGAGTGC GGATCTCCCATAGCTAATGGGATGATAGGAGAGATTAAAAAAGCTATGGTGACTATGAAAACAAAACAACCGAAAAGAGG GTTAATCCGTCCCTCGGCATCAGGTTCTCAGACAGAAATTGCCAGCTTTTGGGGTAAAACTACATTTCATGCTCAGGAAG GTGATGAAAAAAGGAGCAACTACTTTTCAAATGTTTTCAAGTCAGCAAAAAAGAAGGTTAACAGTCTCAATTGGCAGCAA CCTGATGCTAGGGGATCAATAGATTCCAAAGGTGAGAAGCCACAGGTGTGTCTTGATTCGCAATTATCAACCACATCTGC TAGCATTACTTCATCTTTACAGGGTACTGAAACTGATGAGTTACCCATGTCAAGCCAGGTTGGAGGTGAGTCTAAATATG AAGAGACAGATGCTAGTGATATTAGTGTTAAGTTATTGTCAGTTTCAGAAAGATATGATGACTTCAAAGCTAATAAAGAA GCTAAGCTAGAGGAGTGGCTGGAAGGAACCAGCAACCTTGATGATAATTGCATTACAGGTGATGAAAAAAGGTGA
Protein sequence (LotjaGi5g1v0270400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYEFSNVDGFLEISESMAEMIKYVANEPSVGLFFIQHHAQNAVPNVIKVKKNLVEKSHETTLQTQDFEDSIAMVRSMKEC GSPIANGMIGEIKKAMVTMKTKQPKRGLIRPSASGSQTEIASFWGKTTFHAQEGDEKRSNYFSNVFKSAKKKVNSLNWQQ PDARGSIDSKGEKPQVCLDSQLSTTSASITSSLQGTETDELPMSSQVGGESKYEETDASDISVKLLSVSERYDDFKANKE AKLEEWLEGTSNLDDNCITGDEKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 263 | 263 | 2.1E-132 | – | |
| PANTHER | 1 | 263 | 263 | 2.1E-132 | ||
| Pfam | 8 | 110 | 103 | 1.0E-25 | ||
| MobiDBLite | 188 | 215 | 28 | - | – | |
| MobiDBLite | 188 | 212 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0270400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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