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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0272600 |
| Transcript ID | LotjaGi5g1v0272600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNL-type zinc finger protein; TAIR: AT3G54826.1 Zim17-type zinc finger protein; Swiss-Prot: sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein; TrEMBL-Plants: tr|I3SDC8|I3SDC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0272600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58606035..58608118) extracted from Lotus japonicus Gifu genome v1.2.
TTTATTTTTAACCCATGGGCTGAAACAAAAATTAGGGAGCAAGAAAGCACCATGGCCCAAAACACCTTATAATAGCTTGT GACCATTCTCCACCGCCATCGGAGCGGAGCAACAATCGCAGTAACATGGCGACGCCGGCAATCATGTCGCAGTTGCGGAG GCGATTCATCTCAAGCCAAATCCCTAATCACGGCAACTCCATCACTCAAGGCATGCCTTCAATTTTCCTCTACCTCTGCA AAAATTTTGTGTTTGTTTTGTGTGTGTGCTGTTATCGTTGTTGTAGATTTTCTCAACTTCAAGCTTTTTCATACTACCCT TTTGTTGGTTTTAGAAAATTCGGAAATTCCATGGCTACTTCAACTTGTGTATAAAATTTTAGTCCATTCCACTGTTCAAT AATTGATTGGAAGCAAAATAATTAATAAACTATTTTTCATGCATGAATGGTTGGCTTCATATCATTATTGATAGATAATG TTGCAATTAACTGCTAATTCAGTGCTATCTAGACTTGTTATTCTTAACCACCATGAATTTTTTTTTTTTGCTTCAAGTGC TTTCAGTACTACCCTGAATTTGATAAGAGTCTAAAAGCAATGAAGCTTTTGGGGGGAAAACACTTTTAGGGTTTATAAAT ATATTTTAATATTTGGAATTTTGCATCTACTCAAATGTGAAGCAAATGGTGTTTTCAGATTAACAGGAAAGATTAGATAT TGTAAGCTTGAGTTGAACCTGCTCTTAGAATGGTTAATGCTAGTTCAGTTAGCATGCTTTAAATTACCTGTGATAGATGG TTACGACTCCCGGTTATTTTTAAAATACCTCATTTTCGCTGAGTTCAGTTGAGTTATCCATTGGAATTTGGAAGCATATT TGCAGGGAGGTTAATTTTGTGGCGGATGCCTTTGCTAAGAATGCTTTATCCTTGCCTATGATGTTTCACCTGACTTTTGT GTAGTTCCATTTATGTTTGATTCTGCAGTACTTTGTGTATGCTGGGCTAGTTTCCCTTGTTTTAGGCTTTTAGCAGCGGT TTTTATATAAACAAAAAAAAAACTGATTTCTTCCTCTTTATTCATTTAGAGGTAAATTATGATTCTGATTAACTTAATGT TCATTTCAAGTTAAAGCCACTTTTGATCATTCACCTAAGAGGATCTTGTGCATTAAAAAATGGAGATGTTTGTACTATTC TTTCCCATGTGTGGAAGTTTTTCTTATTAATAGGTTATGTTGTTTATTGGCAGCATCCTCTTGGCATTCTTCTATCGGTA CAATGTTAGACAGATATGGACTTCATAAAAAGGGGTTCTTCTCTACGGATACAAATCCAGACAAACATGTTTGTGAAGAT GCTGACTCCTCAAAGCCTAGTGTGATCCCAGATAATGCTCCTACATCCATGAGCACTAATGAGAACTCTGAGTCTGGTGT AAAGTTTTCTGCTAACTCCAGTTTGAAAACTTCCTCAAGGCATGACCTTGCTATGATTTTCACCTGCAAAGTTTGTGAAA CGAGATCTATTAAAACAGTTTGTCGTGAATCGTATGAGAAAGGTGTTGTGGTAGCAAGGTGCGGAGGGTGTAATAATCAT CACTTGATTGCTGATCACCTTGGATGGTTTGGTGAACCCAGAAGCATCGAGGACTTCCTGGCTGCACGTGGAGAAGATGT AAAGAAAGGTTCAATTGATACACTGAATCTTACACTGGAAGATATTGCTGGAAAACAGCCTGCATTAGGGTAGCACCTAG ATTTTGGAAGGGTCAGGGAATGTAACTTGACTTGGTGTTTGCAACTCAATTCTTCTGTTTCTTGATTATCCTGATACTAA AAAAGTGACATTTTCTTAATTGTTTTTTTGTGCTTACTGAAGTAATGCTTGAGATTATGCATAAACATTAAACAGCCAAA TAAAATGCGTCTGCTAGGAAAATTATAACCAAAATCTTGTTTATCCAGCATTAATTTGTATCCACGGCTCCGCGCGCATG CAAATCACATTTTACTAAGATCAATGTAGTTGTATGTAATTGGGAAGTGAGGAACTGGAGGAAACAACCTAGAAAATAGT TGTG
CDS sequence (LotjaGi5g1v0272600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGCCGGCAATCATGTCGCAGTTGCGGAGGCGATTCATCTCAAGCCAAATCCCTAATCACGGCAACTCCATCAC TCAAGCATCCTCTTGGCATTCTTCTATCGGTACAATGTTAGACAGATATGGACTTCATAAAAAGGGGTTCTTCTCTACGG ATACAAATCCAGACAAACATGTTTGTGAAGATGCTGACTCCTCAAAGCCTAGTGTGATCCCAGATAATGCTCCTACATCC ATGAGCACTAATGAGAACTCTGAGTCTGGTGTAAAGTTTTCTGCTAACTCCAGTTTGAAAACTTCCTCAAGGCATGACCT TGCTATGATTTTCACCTGCAAAGTTTGTGAAACGAGATCTATTAAAACAGTTTGTCGTGAATCGTATGAGAAAGGTGTTG TGGTAGCAAGGTGCGGAGGGTGTAATAATCATCACTTGATTGCTGATCACCTTGGATGGTTTGGTGAACCCAGAAGCATC GAGGACTTCCTGGCTGCACGTGGAGAAGATGTAAAGAAAGGTTCAATTGATACACTGAATCTTACACTGGAAGATATTGC TGGAAAACAGCCTGCATTAGGGTAG
Protein sequence (LotjaGi5g1v0272600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPAIMSQLRRRFISSQIPNHGNSITQASSWHSSIGTMLDRYGLHKKGFFSTDTNPDKHVCEDADSSKPSVIPDNAPTS MSTNENSESGVKFSANSSLKTSSRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCNNHHLIADHLGWFGEPRSI EDFLAARGEDVKKGSIDTLNLTLEDIAGKQPALG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 191 | 188 | 3.1E-55 | – | |
| PANTHER | 4 | 191 | 188 | 3.1E-55 | ||
| MobiDBLite | 63 | 91 | 29 | - | – | |
| MobiDBLite | 72 | 91 | 20 | - | – | |
| ProSiteProfiles | 102 | 194 | 93 | 17.426 | ||
| Pfam | 109 | 169 | 61 | 4.7E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0272600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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