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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0275200 |
| Transcript ID | LotjaGi5g1v0275200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Patatin; TAIR: AT2G39220.1 PATATIN-like protein 6; Swiss-Prot: sp|O80959|PLP6_ARATH Patatin-like protein 6; TrEMBL-Plants: tr|V7BFS1|V7BFS1_PHAVU Patatin; Found in the gene: LotjaGi5g1v0275200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58903761..58909649) extracted from Lotus japonicus Gifu genome v1.2.
AGAAACTATACTAAATTGAAACATTGATGACGGAGGAGTCCAATTGGTGAAATCTGAGCCATGGATGATGAACATCAAGA TTGACGGTATACAAGTGTCGGTGACTGATTGGTGATGCTCACAATTCCTACTGTAGGACCCTCTATTGTTTGTCCCCCCC ACCCTCTCTCTGTAGCTGAGAGGAGGCCACAACAATCAACAACAGTATCTTCTTATTATGTCATGTTTTTTTAATTCATG TATATAGAGACCGTTGAAGCCTGCTTGCTAGCTGAATGAATGGTGAATAATAATAATAGTTGTAGTAAAAAAATAGAACA AAGAGTCATGAGTATATATAGATAGATAGAGAGATATTGACATGGTGTTGCAGCTGTGGTGATTTGGCATTTTCTGGTTT TGTTCGGTGATTGTTTGTTGGTTGGTTGGTTGGTTGGTTGGGTTTGAACTTTGACGTTTACAATCACAATTACATAGAGT TAGACAAGAGAAGAGGTAGCTACTTTGGCCAAAACAAAGAGAGGGTATATTTTCTTCCTTCATTTTAGAGAGCATAAGGG TACCTTGTGCTCTTTTTCTACCATCATGGTATGATTGGTTTCAGACTCATTGTTTTCTTTCTTTACTTCCCCTGTTTGCT TCCTGGTGATTGGAGAAGAAACTTGACTTTTCTGGAATCACATTCATTCTCCTCGAATGAGGTAGCTATGTTTGTTTTGT TTCATTGGAAGAATGTTCATTTCTAATTCCAACCATGCTTTTGAATTTTCATTTCTAAACACGTTTTCCTGAGAAAATTT TCATTTGTTTTTTCTTCTCTGTTTTCTTCTTCTATTTTATAGGCGTCAGTTCCGAGGTGGTGAGTTTTCTCCAACACCCA GATAATAATCCATGCAACAGAAGCCAATGATGTGTTAACTCCTTCATCATCTTCTTCTTCGTTCTAGCTTTCATGCCATG CTGAGAAGTTTGATAGTTTGAAAGGAAGAAAAAAAAACTCAAGGGTTGTTTCATTTTCTCGGGAAAATATTGAAAGAGAA AGGAAAATGGATTGTAATAATCTCATGGAAATGCAGGAACCGAGCATTGAAACTGATAAGCTCAGCTATGAAATCTTCTC CATTCTTGAGAGCAAGTTTTTGTTTGGTTACGACGAGCAGAAGCTCTGGTTTCCGAAGCAAATACCCACCGCCGCCGCCA TTGAGACACAGCAGATTCCGAGCATCGCCGGTGATGGAGTCTCCGCTGTTAAGAATCAGAGGGGGAAGATATGTATACTG GCTATCGACGGCGGTGGCATGCGGGGGATCCTCGCCGGGAAAGCTCTGGCCTACCTGGAGACCGCGCTGAAGAAGAAATC CGGCGACCAGGACGCGAGAATCGCTGATTACTTCGACGTCGCCGCCGGGGCTGGTGTTGGTGGGATATTCACCTCGATGC TCTTCGCCACCAAGGACCAGCAGAAACCGATTTTCGCCGCGGAGGATACATGGCGGTTTCTGGCGGAGCAGGGGAGGAAA TTCTACCCCAGCGGCGGAGGCAACCGCGGGTTTTTCAAGAGACTGTTTGGCGGAGGGTCTGGGTCGTCAGGGAGCGCGAC GGCGGGTTTGGAGAAGACGGTTAAGGAAGCGTTCACGGCGGAGGATGGGCGGAGCTTGACGTTGAGGGACACGCTGAAAC CGGTGCTGATTCCTTGCTATGATTTGTCCAGTACGGCGCCGTTTTTGTTCTCACGTGCGGACGCTTTGGAATCGGAGAGC TTTGATTTCCGGTTGTGGGAGGTTTGCCGGGCCACGTCGGCGGAACCAGGTGTTTTTGAGCCGGTTCAGATGCGGTCAGT GGATGGTCAGACCGGGTGCGTGGCGGTGGACGGTGGTTTGGCGATGAGCAACCCGACCGGGGCGGCGATCACGCATGTGC TGCATAACAAGCAGGAGTTTCCCTTTGTGAGAGGGGTGGAGGACCTGCTTGTTCTTTCCCTTGGAACTGGGCAGCTCATG GATGTCAAGTTTGACTATGAACACGTGGCGCGATGGAAGGCCAAGGATTGGGCCCGGCCAATGGCCCGCATCTCCGGCGA CGCGTCTGGGGACCTTGTTGACCAGGCCGTCGCCATGGCCTTCGGTCATTCCCGGAGCACCAACTATGTTCGCATTCAGG TACATGTAAATAAAATTAACTTCCATTTCATCTGCACATGATGGTAATGTAGCATAAATGTTGTTGTTGTTATCATTGTA GTTGAATAGAATTTGAGGGTTTAAGGGAATGTGGTTGTCATGTTGTTTTGATTCAGATGAGAATGTCAATTAAACTATAT CTGAATAGGAAATGAGCAACTATTATGATGTGAATGTTGTTTTCTTTTCAATAATTTTGGGTATCTAAGAGGGGCGGACC TCAGCACAACGATAAAGTTGCTGCAATGTGACTTCGTGGTCATAGGTTTGAGTCGCAAATCAGCATCTTGCAAAAATGTA AGGTAAGGTTGCATTTGTTAGATTCACAATGTGAGTCTGACCTCTACCCGGACCTCGTGCATGGCAGGAGCTTTATAGTT TATTAATTTGGGGTATCTGATTGAGTTTGGGAATGCTGGCTGGGAAAAACAGGGGATGTTGATCTCAGAAAGGTTAAGGG GAATTAAATTGAGTCAATTTCAGAACAGCAGGAGGGTAGGGTTTTGCATAGGGGAATTTGTTTTGCCTTGTCTGTATGCA GCAAGTGGAAGAATATGATGGGATAGGATAGCTGGATTTGGACTTGTTAGGGAGGAGTAGGGGGATATATGTTAATGTCA ATTAATGTTGTGTATTTTTGTCCATCAATAATGTGTATCAGTATTCAGAAACCTTGCCATTCTTGATTGACATTGGATTT GGTTGGTTATCAGTCTTGTTGCAATGTATGTAATGTCATGTGTGCACTATCTCACTAGCTGGTGAGATTGAATGGATACA TTTCTTTTCCCAGTGTAGGATCAAGAGGGTAGTAGCATTTGATATTGCACTGTATTGAATTTCATTTTGTCAGAACCTCA TGTACTAATGCCCCTTTTTAGGTAAAGCTAATAAAAGCCCATTCTAAAATTTGAGTGGGATTGTGATCACCAGCTGTTGT GGCTTTTAATTGTGATTAATGTGAGCATCTTATCCTTCATTTTCTTTTAATGGTGGATTTTCTAAGCAATTCTTGCATGA CAGGCGAATGGGTCGAGTATGGGGCGATGCGGACCCAATGTAGATACAGATTCCAGTCCCGACAATGTGAGGATGCTGAT GGGAATAGCTGAGGGGATGTTGAAGCAGGAGAATGTCGAGTCGGTGCTGTTCGGAGGGAAGAAGATTGGTGAGCATAGCA ATTTCGATAAACTCGACTGGTTCGCCGGAGAGCTTGTTCAGGAACATCAGAGGAGGAGCTGCAGAATAGCACCCACTGTT GCTTTCAAGCAAGCCACCCCAAAATGTAAAAACAGTAAGCAAGCATTCTCTGTTGTTTTGTTTTGTTTTGTTTTGTTTGT GTTACCTCAATAATTCATAGATAGAAAGAAAGCAATTTTAGTGGACCCTAGCAATAAATAGTACTAGATAACAATGTGAA CATGGTAAATTTCACGGGTAGAAGATCAACACCCCCAACTTGTAGATGTTTTAAGGTTGATGAATTTTCAAGTTCAAACA TGTTCATCAGAAATAGCACAGTTGAATTTTATTGACTAGTTAGCAAACCAAGTGTTATCAGGAACAGGTGCTGAATTTGT CAGCTTCTGTGTATTTGCTCAATTTATAGAATTATTGATTGATTCTTTTAGCAAGCAATTTGAACTCAAGTTTTGTCGGC CCACCGACACTCATTGTGTTAGTATCATCAGGCAAGGGCATTATGGTCACTTTAGTTCAAAAGCAGGGTGGGGAACTTGG AATGAAGAGGTTAGGTCAAGAGGTTTTTTTTTTTTATGATGTAGAATGAGATCATGGCGGGGCACCCTTAAAAGTTTTTT CCGTAGTCCTGCAAAAGGTGCTTCTCATGTCATGATGCTATGAACGGCTGGTTTCATTTAGAAAAAAATAAATTAAGGCT ATGTTTGTATATCTATTAGTATTAGTCTAATCGGACGTTTCACGGTGAGTGCAACTCTTCCTATGGATTGGGATGAAAGT GAAAATGGATTTCTTATAGAATCCCTACATTCACACCGTTACGTAATCTGAGTCGTTTGACCGATCTTGATAAAATATAT GAACAAACCGATCTTGATTAGGCGGCTCGGATTGCACAACTACCTGAATGTAGGAATTTCCGGACTGCAAAGAAGCTGAA TCCAAAGAAAGTTCATTCATGTTATACTTAATTGGTATACAAAGAGGCACTTCCTAAGTGGAGGGTGTTGAGGTAATTTT GGTTGAAATTCTGATGTTCACAAGTTGTAAACTTGTAGGGTCCTTGTGCCAGTGAGTACCACTAGTTAATTAGGTTCTCT ATGTGGTTTGTCTTTTATCTTGTTTCTTCCTTAGAATATTTGGTAGGATATATTTTTTAATTTCTCTTTCACCATATATA TAAATTTTTGATTCCACATTTTTGATTCCACACTTTTCCTAACATTATATTTGCATGTAAAAGGTTTTAACGTGTAGTTC TTTTTGTTGCAGTGGAAAACTGATATAGGAGGCAAAAACAAGAAGCAGGAGGAAGAAAAAGAAAGAAAATGCAGATAGTA GTAATAGCATAGCAGCTTTACTTTTGAAGAAGACAGAGAAGGTTAGGGAGTTTGAGTGAAAAGGACAAGTGGTGTAAAAA GGGTAGAAAATCTCTGTGGGATACTTTGCTCTCCAGAGGACAGACATTGTGGTGTCCACTCCACCTTTCTATTAGGGTAA GGAACCAAGAAAGAAAAGCAAAGTGTCTGCATTAAAGCTTTTTAGGGTCAAACATGAGTCTCAATCAAGTGTGAGTTTTT TAATTTCAAAAATTCAGGATGGTAAATTGCATTACATTCTTCCATTCTACTTTTTTTTTTAATAAAATTTTGTAAATCTT TTTTTATTTTTTATTTTGTCAAAAGCTTCATCCCTGCTCAAAGAAACTTTGTAGGTGGTGGGGCTATCTTGTTATATAAA ATCTCAAATGTGTTGCCAAACTTGTCTCTGTCATCAGATTGATTTTTTATTTTTTGACTTCATAGCACGGTGGAAAAGGC TTAATTCATGGTGAGTGAGTACCTTTTTTGAATGATTCAACAGTGTCTCTTGTTGACATAAGGTTGGGCCAGCAGCATGT CCATACCTTGGTAGTTGGTACCTGTTCCATCCTTAGGCAAGCTAGTAATTATTTTGTTCTTTCAATTAATTTATTATTTG AATATATTTAAAAGTTAACATTGTGAAATTCAGTTATAAAACTGATGATAACTTCCAGTTCGATTGGTATATAGCTAAGC ATCTTAAATATTTTGTTGATGGTTCAATTTCTTGGCGGTGTGTAGGAGAAATGTACATACTTAATTTGTTTTTAGAATTT TGAAGAGATTATCTCATAATAGCTGGTTGTTGAGTAACTTTGGTGGAAAAAAAAAGGATATAGATTGTGAACTTGAAGTT AATTGTGAAAGCAGCATCTAACTGGATGAAAATTGATTCTAACCTTGGAGGGTCAATTCTACCACTTTTAAACATGTAAC TAAACATGTTCTAAATTTTAGTAGTGGTTTTTCTCTTAAAAAGAATCTGAATTCAGGGCCAATTGTTTTTTAAAAATTGT CTATTCTGTAAACGGCTTTGATTGAACTTAGGAAAAGTGAAATACCTAACATTGTACACATTGATGTCTGGATCAAGTGA TAGTTAAGAAGAGAAGTACCCGTGTAGTTTTTTTTTTCTTTTCTCTATT
CDS sequence (LotjaGi5g1v0275200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGTAATAATCTCATGGAAATGCAGGAACCGAGCATTGAAACTGATAAGCTCAGCTATGAAATCTTCTCCATTCT TGAGAGCAAGTTTTTGTTTGGTTACGACGAGCAGAAGCTCTGGTTTCCGAAGCAAATACCCACCGCCGCCGCCATTGAGA CACAGCAGATTCCGAGCATCGCCGGTGATGGAGTCTCCGCTGTTAAGAATCAGAGGGGGAAGATATGTATACTGGCTATC GACGGCGGTGGCATGCGGGGGATCCTCGCCGGGAAAGCTCTGGCCTACCTGGAGACCGCGCTGAAGAAGAAATCCGGCGA CCAGGACGCGAGAATCGCTGATTACTTCGACGTCGCCGCCGGGGCTGGTGTTGGTGGGATATTCACCTCGATGCTCTTCG CCACCAAGGACCAGCAGAAACCGATTTTCGCCGCGGAGGATACATGGCGGTTTCTGGCGGAGCAGGGGAGGAAATTCTAC CCCAGCGGCGGAGGCAACCGCGGGTTTTTCAAGAGACTGTTTGGCGGAGGGTCTGGGTCGTCAGGGAGCGCGACGGCGGG TTTGGAGAAGACGGTTAAGGAAGCGTTCACGGCGGAGGATGGGCGGAGCTTGACGTTGAGGGACACGCTGAAACCGGTGC TGATTCCTTGCTATGATTTGTCCAGTACGGCGCCGTTTTTGTTCTCACGTGCGGACGCTTTGGAATCGGAGAGCTTTGAT TTCCGGTTGTGGGAGGTTTGCCGGGCCACGTCGGCGGAACCAGGTGTTTTTGAGCCGGTTCAGATGCGGTCAGTGGATGG TCAGACCGGGTGCGTGGCGGTGGACGGTGGTTTGGCGATGAGCAACCCGACCGGGGCGGCGATCACGCATGTGCTGCATA ACAAGCAGGAGTTTCCCTTTGTGAGAGGGGTGGAGGACCTGCTTGTTCTTTCCCTTGGAACTGGGCAGCTCATGGATGTC AAGTTTGACTATGAACACGTGGCGCGATGGAAGGCCAAGGATTGGGCCCGGCCAATGGCCCGCATCTCCGGCGACGCGTC TGGGGACCTTGTTGACCAGGCCGTCGCCATGGCCTTCGGTCATTCCCGGAGCACCAACTATGTTCGCATTCAGGCGAATG GGTCGAGTATGGGGCGATGCGGACCCAATGTAGATACAGATTCCAGTCCCGACAATGTGAGGATGCTGATGGGAATAGCT GAGGGGATGTTGAAGCAGGAGAATGTCGAGTCGGTGCTGTTCGGAGGGAAGAAGATTGGTGAGCATAGCAATTTCGATAA ACTCGACTGGTTCGCCGGAGAGCTTGTTCAGGAACATCAGAGGAGGAGCTGCAGAATAGCACCCACTGTTGCTTTCAAGC AAGCCACCCCAAAATGTAAAAACATGGAAAACTGA
Protein sequence (LotjaGi5g1v0275200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCNNLMEMQEPSIETDKLSYEIFSILESKFLFGYDEQKLWFPKQIPTAAAIETQQIPSIAGDGVSAVKNQRGKICILAI DGGGMRGILAGKALAYLETALKKKSGDQDARIADYFDVAAGAGVGGIFTSMLFATKDQQKPIFAAEDTWRFLAEQGRKFY PSGGGNRGFFKRLFGGGSGSSGSATAGLEKTVKEAFTAEDGRSLTLRDTLKPVLIPCYDLSSTAPFLFSRADALESESFD FRLWEVCRATSAEPGVFEPVQMRSVDGQTGCVAVDGGLAMSNPTGAAITHVLHNKQEFPFVRGVEDLLVLSLGTGQLMDV KFDYEHVARWKAKDWARPMARISGDASGDLVDQAVAMAFGHSRSTNYVRIQANGSSMGRCGPNVDTDSSPDNVRMLMGIA EGMLKQENVESVLFGGKKIGEHSNFDKLDWFAGELVQEHQRRSCRIAPTVAFKQATPKCKNMEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 458 | 453 | 4.3E-223 | – | |
| PANTHER | 6 | 458 | 453 | 4.3E-223 | – | |
| Gene3D | 63 | 447 | 385 | 4.4E-88 | – | |
| SUPERFAMILY | 73 | 409 | 337 | 1.65E-48 | ||
| CDD | 77 | 401 | 325 | 2.31708E-70 | – | |
| Pfam | 78 | 288 | 211 | 2.2E-21 | ||
| ProSiteProfiles | 78 | 288 | 211 | 39.763 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
Expression pattern of LotjaGi5g1v0275200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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