Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0278400 |
| Transcript ID | LotjaGi5g1v0278400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT4G10110.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4; TrEMBL-Plants: tr|K7N448|K7N448_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0278400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59362296..59365719) extracted from Lotus japonicus Gifu genome v1.2.
CGCGTATATATTATATTGCCTAATCGAGAAAAATAAATCCTTCGATTCCAGAACAATCTGCTATTCACTGTTATCGTGCT CTTCCCTGTAACTAACTCAAGCACTTCCAAACCCTAACCCTAACTCCTCCAATTTCTCCCTCATTCGCAATTCGCAGTCC TAAATTCTCAAGGTAGTTACGCCTTTCAATATATGATTCTGCAATTTTTCACGGTTGTTGGTATTGTTTCTCGTAAATCT GATTCAGAATAGTTATTAATTGTTCTCTGAATTTGTGATTTTTATTTTGTAACTTCAATTATTTTGAGAGTGGAAATTTG ATCTTTGTTTATGCAAACCTGTATAGATTATGTGCACACTAAATGCTGAAATTTTGACTATTGCCATCTAATTCACTATT GAAATTCCCTGTTTAGGGTTATGATATTTCTCTGCTTCTAATTGTCATGTTGTGCTGGAATCTACAGGATAATTGGCGGT ACGATATCCTGTAATCGTAGTAGGCTTTCACGTCTGATCTAGATACAGCTATGTCAGACAACTCAGGGTGCTCTGTGTAC ATAGGTAAGCTCCCCAATTTTCCTTCAGTTACTTCAGCTTAAATGTGATTGAAAAATTTGTCATGTTTATAGTTGCTTAG TTTTTCTTAGAAATAGTCGCACCGATCACTTGAATGTGACATTTTGAAGATACACTCTCACACTTAAGTGAGATAAATTT GGATTCTGATACGTGTATCTTGTAATTGTATTGTGTGTGTTTTTTATATGATGGTTTTTGGTCATGGCAGGAAAATATCC TTGGGTTTGTGGCAACTGACAGTCAGTTACACTTGTGTAAATTGAATAGTTTTGGATAATGTGAATGGTTAAGAGTTTCA ATTTAAGATATCCATTTAAATTATTTTTCACTTTGCTTTTTCCTGTTTTCTTCATACGCAGTTTTGGAGAAATATTACAG CTTAAATTGTTGATTCTAGCTACCATCAAATTTTGTTTTATAACTTCAGCAGCATGAAAAGCATTTTAACAATAATTTTG TAGATCCTTAAAAATATTGAGAACTTAGGGGTGTATATTTCATGGTATAAGAATCGGCAGTTTATGAAACAATGTCAATA TCATTCACCTTTTTGAACAAATTGGTCTGGTAAATTTATGTAATATAAATCTTCATGATCATTTTTGCTGAAGCTTTTCT TCTTCCATCTTCGTGTCTTGTGTACATTGCATTGTTTTGATGAACAATAGAAGTTTTGCTTGTAAATTGTCCCCCGTGCT ATTATACTCTTTTCATAAGCTCTGTATCCATTCAATAGGGTATTATTTCATTTACATCTGTGATGTGTTAGATCTCCCTT TTCTCGCTTTGCTATGTTCACTTCAGCAAATATTTTTTTGATGGAAATTGTTCTTGAATAAATATGCATCTGAATGATAT TTAGATGATCTGAGGTTTCCTACACAGTGGGTGTAGTTTGTTTCTTTTATTCTTTTGCTAAACTCAACTTCCTACAGTCA TGTTTTTGCAATTCTTTTTGCAAGCATGCATTTATCTTCATTTATATATCTGGGGTTTTTGTTATAGAATTTCAATTCTT AATGACGGTCGCGGTTGATTGAAACTTCTTTTCGAACTAAACATGTATTTAAGGGCTTTTGGATTTATAGATAAATGTAG TGAATATGGGCATTCATTTGGGCGTTGATTTGGTTACTTCTATTTGATTCAGGCAATCTGGATGAGAGGGTCACAGACAG GGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACCTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAA AAGGTTTTGCTTTTGCAGAATATGAAACTGAGGAGGTTGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTTGTAACACTG TACAACAGAACACTGAAGTTTGCGGTGCGTTCTTGACATCTATGCTTCCCACTTGTTAAGGCCTGGATATTTTGCAATTT TTCATTGAAACTGCTGAATAAAAACTTAGCCTTGTTGATTGGAAGTCCACAAGCTCTATTATCAAACACTATAGTTAATG ACTATAGGTGGATATATGGGTGCGCCACTTTCAAGTATCCAAGTGTGCGTTGGGACATCAATAGGGCTCTATTGGTTTGA ATGCAGAAGCATGTAATAAATAATAGTTGAAATTTTAGATTTATTTCGTGTACTCTTGCTTTGTTAATGACAAGTACAAT CTTCTAATAAACAGATATCTGGGAAAGATAAAACCACTCCTAATGGTTCTACAGCAAATACACCGTCATCAAATTCTTCA CAACGACCAAGGCTTAACCCAGTGCCTATATATAACTCAGAAAATTTTCAACACTCTGCTAGGCTATCAACTCCTGAAAG ATTTTCAGATTATGCAGTAAACCATTCACAAGGTAATGCATAACTGACTCACCTGCTTCAAATTCCTGTTTTCGTCTTGA ATTGCCATCTTATTCTCACAAAAATTTATCTTTTTGGAACTTAATTTTCATGCTTGCTAACTTCTCTTTTCTTTTCTTTA AATATTTGTCCCATGCCAGTTCCTCCTCATCGTTTAAGTGGCCAATCTAGTGGGTATGGAACTCACTATGGTAGCAACAA TTATGAGTACAGTCGTAGAGCTTTGGGGGCAACATTGGATAGCATTAGCCGTTCTAGTGCACGCAGCTCTGATAGAACTA GCCCAATCACTTACCCATCTTACTAATATTTTCAAATATTTGTGAGAAATCAAAATTTCATTCAACATTAGTCCTGAGTG ATAGTAGAATGAATGTAAGTGGGAAATGTGATCAGTGTCCTGTGGAATGCATAAGCTTTCACAAAGCCATTGTTGTAGCT GTAACAAAGTACTATTTAATTATCCAGCTGGGTTGGTGCTTATTGACTTAATGATTGTAGTTCCCTTCCTCATAGGTTAA GGATACTTCCAACTTAATTCTGTAGGTTGAACTCTGAAATTAAGTACAGATCTCTTAGCGCTCGCCATTTTTTGCTTTGT TTTGTGCTCAAAAGGGTAATGTCTGGATTGCAAAACAATCCCATATTTTTACTTTAGAATTGCTTGAAGATCTTTCTGGA TTCATGTGTATCAACGTTGAATGAACGGATCTGAGCAAGCTGTAGTTCTTTGTTTTACTTTTATGACAATGAATTGAAGT TTGTTCTAAATTAATTTGGTTAACACAGTATAACCAATGAATGAAACAACACTCAAACTAAACATCTTGCGTTGGCGTGA GATAAAATATTTTTCCTATTGGTATCTTATATTTCCCAAATGTAGTGTAATTGTCACATTGCCCTAAATTCTGTGATTGT TAAAGGGACTAGGTTAAGTTCATACTTGGTTGGTTGACCTGATTATCCTTAAAACCATGTTCTT
CDS sequence (LotjaGi5g1v0278400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGACAACTCAGGGTGCTCTGTGTACATAGGCAATCTGGATGAGAGGGTCACAGACAGGGTCTTGTATGATATATT AATTCAAGCAGGACGAGTGGTAGACCTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAAGGTTTTGCTTTTGCAG AATATGAAACTGAGGAGGTTGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTTGTAACACTGTACAACAGAACACTGAAG TTTGCGATATCTGGGAAAGATAAAACCACTCCTAATGGTTCTACAGCAAATACACCGTCATCAAATTCTTCACAACGACC AAGGCTTAACCCAGTGCCTATATATAACTCAGAAAATTTTCAACACTCTGCTAGGCTATCAACTCCTGAAAGATTTTCAG ATTATGCAGTAAACCATTCACAAGTTCCTCCTCATCGTTTAAGTGGCCAATCTAGTGGGTATGGAACTCACTATGGTAGC AACAATTATGAGTACAGTCGTAGAGCTTTGGGGGCAACATTGGATAGCATTAGCCGTTCTAGTGCACGCAGCTCTGATAG AACTAGCCCAATCACTTACCCATCTTACTAA
Protein sequence (LotjaGi5g1v0278400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDNSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRLFSGLVTLYNRTLK FAISGKDKTTPNGSTANTPSSNSSQRPRLNPVPIYNSENFQHSARLSTPERFSDYAVNHSQVPPHRLSGQSSGYGTHYGS NNYEYSRRALGATLDSISRSSARSSDRTSPITYPSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 188 | 188 | 3.7E-66 | – | |
| PANTHER | 1 | 188 | 188 | 3.7E-66 | – | |
| Gene3D | 1 | 95 | 95 | 3.9E-20 | ||
| SUPERFAMILY | 3 | 84 | 82 | 2.17E-20 | ||
| ProSiteProfiles | 7 | 86 | 80 | 14.607 | ||
| SMART | 8 | 82 | 75 | 1.5E-16 | ||
| Pfam | 9 | 80 | 72 | 1.6E-14 | ||
| MobiDBLite | 85 | 115 | 31 | - | – | |
| MobiDBLite | 140 | 159 | 20 | - | – | |
| MobiDBLite | 143 | 159 | 17 | - | – | |
| MobiDBLite | 176 | 196 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0278400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…