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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0288000 |
| Transcript ID | LotjaGi5g1v0288000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Holocarboxylase synthetase; TAIR: AT4G09830.1 nuclear receptor family 2 group C protein; Swiss-Prot: sp|A7Z4S6|DXR_BACVZ 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TrEMBL-Plants: tr|I3SPA8|I3SPA8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0288000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60486551..60490464) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCATGGACACGCCGCACCGCACCGCACCGCAATAACAGAGTAACAAACAGTTTTTTTGTTGTTTCTTTCCGAAATCG ATCGAAGGAAAGAAGCAAATTATCACGTGCTTCGCATGCCCCCGATACTTACCATGTGTCTCTTTCTCTTCCTCTGGGCC TTCTCTGTTACAACAACACCATATAAAAGCCACAACCTCAACAACACCACCACCACCATCACCATCACCATCACCATCAC AACCCTCTTCTCGTTCCTCCTCCGAACATGGCGAAGAAGAGAAAGTCCATAGCCACCAGCCTCGACGAGGTCGATCGAAC CATGCACGCCTCCTTCTGCACCGCCGCCAATTCCCTCTCCCAGCTCTACACTCACGCCATGAACCACCAGAAACTCTCCT TCCAAGCCGGTGAACGCCACGGCCTCGTAATTCCCCGATTCCTCCCTCACGCGTTTCGCTTCTTCATTCGATTCGTTTCC CCGATTCAAATTATCATAATTCATTCTGATTTTTGTTATTAAACCTTTGAATTGGGATTCAATTTCTGATTAACACTCCA ACACTGAATCATTCATCTATGAGTATTGCTTTGCTTTGATTTTCTCTGCTTAATGATGTAGTGTTTTTTGTTTTGTTTTG TGTTCATTCCAAATTGCTGTGAAAAATTAAAAAAAAAGTTGTCAATTAATTACATCTTCACTGTAAGAAAGAAACACAAA ACAAGATCAGTTTTTTGCTAGTGTTTTTCTCAAATTTGAATAATATTGAATTTTTAGGTTTTGCCTCTTTAACACTGATT GGTGATTTTGAAAAATAAAGGTTTTTTTTGCCATGTTCTTGGGAGGAATTAAGCTCAGACAGTATGGTAATTGTTAGTTT GTTACTGGAACCTGACTTGCTGAGGTTTCCAATGGGTCATGGATTGTTGTAATGGTGATGCTTATCTGTCTGATAATGGG GGTTTGCCCTTATGTTTGGGGTTTAAAGGGTGTCTTTGCATTTTGTTGATGTGTGGTGTTTTTCTGATTTCAGGAAAAGC TTTATCAGTGGATCTGGAGACAACAAGAGGGTGGATCAAGAGTTGGAACAGTTGATATACTTAACTACATTCAGGTTGGT TTGACTGTTTTCTTTTCAGCACCTAATGGAGTTTCATTTGTAATTGTGTGTGTGCTTCTGCTGATTGGAAAGGGCCAAGT TGGGAACTGTGTGTGGAAAACACACCAACACACTTAAGAAGGAGGGGGGGGGGTTTAGAGTAATGTAATATGGCTTTAGC TATGGAAGTTAGTGACAAGAAAATGCTTACCTTAGTTCATACATGAATTGGTATCTGATAGCAACAATGGGGGTTGACCT AATCATGGGCTGGGTTTCCCTTGAGGTTGTCAAAATTTAAAGGAAGCGAAGCCTAATGAAATGGTTTATGGAATTTTGCC CAAACCCCCCCCACCTGCAATGAGTAGTCTTTGATCGGGAAAAAGTACAAGAAAACAATCTGTGTGAAATATTATACTAG CCTTTTTGTCTTCTCTTGAAATTTTGGCTGTTTTAAGTAAAAGCATTCACTGGTATTGCCAGTGAGCTTGCTTAATTTAT CAGTTGTGTTTTGTTTCCGTAGACTGAATCAACAGCAGAACCTTAGTCATCTTTGGCCTGCAGGCCTTTTTCTTGTCTCA TTTTGCTTTTGTTTTCTGTCCTGTTAGTTTTCCTTACATTGAGAAAGCATGTCTTTCACTTTTAACTATATACACGTTTT AACAGAATCAGAAATTTTTTCTTAATTATCTGCAGTGTAGCATGTTGAATCCACAGGACCGGTTATATGTCTAGTATATA TTGACTAAATCATTAAATATTTCTTTAACCTGCTACATGACATCATCATATTCTTGCCTTGTTTAACATTTTAGGTTGAT AACGCTGCATAATCAATAAAATGTAACTTCAATTTAGAAAAGGTCCGGAAAAAAGTGGTATAAGTTTAAGTGGAAGAAAG GCATCTTGTTTTGTCAGATGGATATTGCTTTTCTGTGATCCTGTTGGTGTTTCATTTTTCATTTTTACGAATTACAGAAG AGGTGGCATCTATTATTGTAACTGATTTAGGAAAAATGGTGTTTGGTAATTCATGTTCCCCTTGTGTTCAAGAAGTTACA AAATTGCCTCGGGGCTGCTGGTTACTTGAGAGAAGTAGAAAAGATAATTACAAGTATCACTTCTAACCCATATTGAAGAT TTGTGGGATAGAAAAATTATATTGTTAATATGATTTGTTAACTGGTTATTATTCTTATGGTAGTTTAGATAGTCATCTTG AAGTCATATTACTTACTTGCAAAGAGGGTGGCTGTGTGGGGTAATATAATAACACATTCTTCTTTGTCCCATTTTAAGGA TTTGTAAATTGACAATTTCCTAGAAATTATAATGGTGATCGTGGTCCTGTAGCTTTTATGTGGTTGTGGTCCTGTAACAT AGTAGGTGCTGTGATGTCTTCATACTTCGATGTATATAGATATATGTTGTTATTGGTGGTAAATGGCATGTACCGAAGTT GATTTTTCTACTTGCAGAATGAGCTGGATTATTTTGGCGAGGACCCTACCATGTCACCTAGAGCACCACTGCAACACCAA CAGTTACAACCAGCAGTGCATGTCCCTAGTTCAGGTTTTCCAGTAACTTCAGGATCTTCTGGTCATACAATTGTTGGGCA GGGACTCCGGTCTGAGCAATGTGATAATCAAACAAAAAATTCTGTGTTTTCAAATGCTTTATCAAGCCCTGTTCGTCGGA GTCTTCAGCATTATGAAATTGGGGAGGGAGGGAACTATCCGAGTGGTCTCTCTATGGGGAATGGAAACCGTAACACTGAG CACAGCTTTGTTCACCAGCAAAGCAGGGACGCTACTGGATTTAGTTCCAACGACTCTGCCATGGACATGCATGCAGACTA GTCCTGCCTATTGGTTTATGTACTGAATATTTTTATGTGACCATCATTCTGCTTTACCTGCAAAAGAAGTGAATAACCTT TTGGAAATTCATATCTGGTTTAATGGTTTTGCTCCTTGCATCCTACAAGAAATAGCAGTAGGGTGGAGCCAGTTTAATTA ACCTATTTATATGCTTATGTCTTCCGAGTGACTAGTTTGAATCTTAAATGTTCTTTGTAAAGTTTTTTTTCTTTTTTTTT TAAGATTTTAAATTTGTACCTTGATTGTCTACCTGATCCCTCTTTCTCAAAGTCCGGATTACTTCTATCTGAAGTTTCCT ATGTAAATCTGTCCTTTTCGCCGATTCTGTGTGTCAATTTTCAGCTTCTGGCACCCTTTGTTGATTTCTTTGCTTTTCAG TTCTATATTGTTGTTTCTTAGTGTTTGTACACTGTTTTTTTTTTATGTAGTGCCATCAAGAGTGGCCATAAAGATACCCA CTTGGCAGCAATTTGTATTTCTTTTAAGGTGAGTGTACAAAGTTCCTAGATGTGATTCATTATGGTATATATTTGGTCAA TTCATATTTCTGAAGCATTGCAAGGAAACAATTTAAAAGGGGGAAAAAGAAAAGAAAAGGGTCCACAGTGGAAATAACTT ACACCATGGGTTTGCAAAAGGAGGGGCTAGGAAAGAAGGGAAGAAAGGTGTTTTGTAATTGGAGCTTTGTAAGGGATGAT ATGGAATTGCTTGTGCTGTTGTGCTTGTGTGACGGCAGAGAAGGTATATTAGCATCAGCATACTTGATGCTAAAGGTTAA GTAAGATTGTGTACATTGGTAGAATTGCTCCATTAAGGACTCTCCTAGTTAAACCTACTTGTTATGCTCATCTCTGCTTT TCTTAATTCTTTGGTAGTGCTTTGTTCCACACAAATATGTACAATACTTGCACACTACACTAGGTACAAATTTT
CDS sequence (LotjaGi5g1v0288000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAAGAGAAAGTCCATAGCCACCAGCCTCGACGAGGTCGATCGAACCATGCACGCCTCCTTCTGCACCGCCGC CAATTCCCTCTCCCAGCTCTACACTCACGCCATGAACCACCAGAAACTCTCCTTCCAAGCCGGTGAACGCCACGGCCTCG AAAAGCTTTATCAGTGGATCTGGAGACAACAAGAGGGTGGATCAAGAGTTGGAACAGTTGATATACTTAACTACATTCAG AATGAGCTGGATTATTTTGGCGAGGACCCTACCATGTCACCTAGAGCACCACTGCAACACCAACAGTTACAACCAGCAGT GCATGTCCCTAGTTCAGGTTTTCCAGTAACTTCAGGATCTTCTGGTCATACAATTGTTGGGCAGGGACTCCGGTCTGAGC AATGTGATAATCAAACAAAAAATTCTGTGTTTTCAAATGCTTTATCAAGCCCTGTTCGTCGGAGTCTTCAGCATTATGAA ATTGGGGAGGGAGGGAACTATCCGAGTGGTCTCTCTATGGGGAATGGAAACCGTAACACTGAGCACAGCTTTGTTCACCA GCAAAGCAGGGACGCTACTGGATTTAGTTCCAACGACTCTGCCATGGACATGCATGCAGACTAG
Protein sequence (LotjaGi5g1v0288000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKRKSIATSLDEVDRTMHASFCTAANSLSQLYTHAMNHQKLSFQAGERHGLEKLYQWIWRQQEGGSRVGTVDILNYIQ NELDYFGEDPTMSPRAPLQHQQLQPAVHVPSSGFPVTSGSSGHTIVGQGLRSEQCDNQTKNSVFSNALSSPVRRSLQHYE IGEGGNYPSGLSMGNGNRNTEHSFVHQQSRDATGFSSNDSAMDMHAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 207 | 207 | 8.7E-87 | – | |
| PANTHER | 1 | 207 | 207 | 8.7E-87 | – | |
| PIRSF | 1 | 207 | 207 | 7.5E-72 | ||
| MobiDBLite | 160 | 207 | 48 | - | – | |
| MobiDBLite | 170 | 200 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0288000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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