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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0289300 |
| Transcript ID | LotjaGi5g1v0289300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT1G43190.3 polypyrimidine tract-binding protein 3; Swiss-Prot: sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3; TrEMBL-Plants: tr|A0A151RTW0|A0A151RTW0_CAJCA Polypyrimidine tract-binding protein isogeny 3; Found in the gene: LotjaGi5g1v0289300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60603883..60605571) extracted from Lotus japonicus Gifu genome v1.2.
CAATTGTATTCCATTTTGTTGACCTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGAATTGTTAAATT TTTTTTTTTTTGAATTATAGATGGGCAATGCTTCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGGATAACT GGGACAAATGACAGGTGTACAATTCTCGTATCAAATCTTAATCCTGATGTAAGCTCTTCATCTCGCTTCTTTTACAGAGT TCTATCAACTCTCAGCTTATTTAGCTTGAAATTTCTTTATCTCAGAGAGTAGATGAGGATAAACTGTTCAACTTGTTCTC CATTTACGGGAACATTGTGAGAATTAAACTTCTCCGAAACAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCC AAGCTGAACTTGCAGTGCACTTTCTGAAGGTTTGTTTCATTTATACCTTGTTTAACATATATATTGTGATACTAGGTTTT GTAATAACTTCACTGAGGAAAAATATATTGTCTTTTACTTTAGTTATAGTTGTTCCTAGTGATATATCATTGTATATATT ATTGATTTATTTCAGTGGTTTTAGCATGCATACAATGTGAATATTTGACAATTTGTCACAAGTTGGCTTAGTGTTTTTGC ACAATTTCAAAACAAAAGAAGGTTTGATAAAAGAAAAATCACATGACATGTATGTTTCTAGCTGTCAGATTTTTTTTCAA TCTATATCTAGGTGTCCGATTAATACTTACCATATTTTGACTAAGCTGTTGATGATAAATTTATATGAGTGCATCTTCTT CCTTGAAGAACTTAATACTCTGTCTTCTGGCATTGTCTCCAACAGTCCATGGAAATTTGTTGGTTGTTCCATTTTCTTGA TGCCTTTGTTTTTGTATGTGTTTATTCTGCGGATCTTAGTGTGATAAGGCTTTTGTTGTATGTTTATTCTGAAGATCTTT TTTTCTTTAAATTGAAATGTTAGGAGTCTGCGCTATTGTTCATTCGTAGTTTTATATTTGTTGATTGGTATGCATTGGTT TTATCGAATGATTAGTAGTGGTCCTGTTTTCAAGAGGGTAGCACTCAATGTACTGTTGATAAAAGTCATAGTTGCAAATA GTAATATCCTGATGTGACCCACATTGTTTCATGTCATGAAATTTGTATAAACTAAACTTATAATACTTTTAACTGAACTT ATTTTTTCATTTTCTATACTGGGTTGCTAGCAAATCAATCTGTGTACCTTGTTTTCTAGTTCTAAGCTGGCCATAAACAT TTTCAACTTTGATATGTAGGGGGCCATATTGTTTGGGAAGCCACTAGAGGTAAACTTCTCCAAGCATGCTACCATAACCC AAGGTGCTGATACGCACGAGTACTCAAATTCAAATCTCAATCGTTTCAATCGCAATGCTGCTAAAAACTACCGCTACTGT TGCTCCCCAACGAGAATGATCCATTTATCCACACTCCCTCAAGACGTCACTGAGGAGGAGATTGCGAGCCTTGTTGAGGA GCACGGAACCATTGTCAACTGCAAAGTGTTTGAGATGAATCAGAAGAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAGC AGGCTACTGAAGCCCTCGTGTGCAAGCATGCCACCTCGCTTTCTGGCTCAGTGATCCGGATCTCCTTTTCCCAGTTACAG AACATTTGA
CDS sequence (LotjaGi5g1v0289300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAATGCTTCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGGATAACTGGGACAAATGACAGGTGTAC AATTCTCGTATCAAATCTTAATCCTGATAGAGTAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTACGGGAACATTG TGAGAATTAAACTTCTCCGAAACAAACCAGATCATGCACTTATCCAGATGGGAGATGGTTTCCAAGCTGAACTTGCAGTG CACTTTCTGAAGGGGGCCATATTGTTTGGGAAGCCACTAGAGGTAAACTTCTCCAAGCATGCTACCATAACCCAAGGTGC TGATACGCACGAGTACTCAAATTCAAATCTCAATCGTTTCAATCGCAATGCTGCTAAAAACTACCGCTACTGTTGCTCCC CAACGAGAATGATCCATTTATCCACACTCCCTCAAGACGTCACTGAGGAGGAGATTGCGAGCCTTGTTGAGGAGCACGGA ACCATTGTCAACTGCAAAGTGTTTGAGATGAATCAGAAGAAACAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTAC TGAAGCCCTCGTGTGCAAGCATGCCACCTCGCTTTCTGGCTCAGTGATCCGGATCTCCTTTTCCCAGTTACAGAACATTT GA
Protein sequence (LotjaGi5g1v0289300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNASAIAAAFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAV HFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHG TIVNCKVFEMNQKKQALVQFETEEQATEALVCKHATSLSGSVIRISFSQLQNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 213 | 213 | 3.7E-100 | – | |
| PANTHER | 1 | 213 | 213 | 3.7E-100 | – | |
| Pfam | 14 | 112 | 99 | 3.2E-31 | – | |
| SUPERFAMILY | 16 | 107 | 92 | 3.09E-19 | ||
| Gene3D | 20 | 119 | 100 | 5.2E-26 | ||
| ProSiteProfiles | 26 | 100 | 75 | 12.901 | ||
| SMART | 27 | 96 | 70 | 1.3E-12 | ||
| Gene3D | 124 | 213 | 90 | 1.9E-17 | ||
| SUPERFAMILY | 127 | 212 | 86 | 8.82E-17 | ||
| CDD | 129 | 207 | 79 | 1.61765E-44 | – | |
| ProSiteProfiles | 136 | 210 | 75 | 12.168 | ||
| SMART | 137 | 206 | 70 | 9.1E-11 | ||
| Pfam | 141 | 204 | 64 | 4.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0289300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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