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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0290900 |
| Transcript ID | LotjaGi5g1v0290900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-2; TAIR: AT1G76890.2 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2; TrEMBL-Plants: tr|A0A1J7I1Q2|A0A1J7I1Q2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0290900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60763578..60767717) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGCTGTAAATATTTATCCCTTTAATATTTTTTCCTCTTTTTCTTTTTCCAGCACTTACGTATGCGACACCCATAGCG ACTCATCCTTGTCTCTCTTTTTTTATTTTTCTTCAATCAAATACCATAAAAAATAAAAAATAATCGAAGATTCCATACCC CTAATCAATCATAAATACATAAAATAACAACAACATTAATACTAATAATTACACACACACACACAGAAAAGGAAAAGTTA ACCGCAGCCTAATCAAAGCATAATGTTTCCAATTTTCTATGATGAAATTGACAGATCCCACCACCTAAAATTAAACAATT ACATTATTTTTATTATCAATTATTATTATTCACCACTGCCAAGCATCTCAATAAAAACCCTTTGAGTTGTGTATACTACT GTTTCTTTCTTCCCATTGTTTCTCATTTTTTCTTCTTCTCAAGCTGTAATTGCTTATTAGCTAGGTAGGGACATATATCT CTCTAGCTAGCTATATGATGCAGCTGGGAGAACAAGAATCAGTGTTGGACACCTCCATGCCGCTGCCGCTGCCGCTGCCA CCACAGGATGGCGCTAACGGCGGTGAGGAGAAAGGAAGAGAAGGCAGTGGTGGTGGAGAGTTAGATGAAGATGGTGGTGA CAAGATCGGTAGCGGTGGAAGCCGGTGGCCCCGGCAAGAGACGTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTG TGTTTCGTGATTCAAGTCTTAAGGGTCCACTCTGGGAAGAAGTTTCAAGGTACATATATATATATTCTTTCATTTTGATT TAAATCATAAATCATATCTTTTTATATATACATACATATTATTATTTTTTGGTGTGTCAGCTTCTTCATGTTTCTCTATG CGCCATTTTTTTTCTTCTTCTTGTTTTTGAAATAACCTACATCATAGCTTCTTCTGGATCATGCATGAAGATCTATTTGT GAATTTTCAAACCAATCAGTTTCTGATTGAATTTTCAGTCACCAGTCATATAATAAATAAAAACTCCAAAAAAATTTAAT TATTTTGTGTGTGTGTGTGTGTGTGTGGGGAGGGGTTGTTACCATCTCTTATTCCTGATGTGAGAATAATTCATTGTCAT CTTGGATTTTTAGTGATAAGAGATTGCTCATGTCATTCAAATTCTCTTATCTATCTCAATTTTATGTCATTAACCATATC CATCGAAGCAATACACAACACGCGCACGCGCACACGATGAATTCATTCATATACAGTTGAAATGAATAATTTTCTTCAAA ATTTTGTTTAGATTACCTTCTTTCTCGGTTTCATCCTTCCATTCAATCAGTTTTTGTGTATTATTTAATGTTCACACTTT TAGGTATGAACTACCTTCGTGTGTTTTTATTTATTTAGTACGGTGCTATGCATATTATTACTATTTGTCCTCGTCTAAAT TTTTACCCTTAGCTTCTTCATTAAATTTGCAATTTTCAATGGAGATATGATAATAAAATCTGATCATTATCTCATTCTCT TTATATTTCATAGGAAACTAGCAGGATTGGGTTATCACAGAAGCGCAAAGAAGTGCAAGGAGAAGTTTGAGAATGTGTAC AAGTACCACAAAAGAACCAAAGAGAGTAGAAGTGCCAAACCAGAAGGAAAAACTTATAGATTCTTTGATCAGTTACAAGC CCTAGAGAAACAATTCTCACTCTCTTACCCTCCACAACCGCAACTGCAACCGCAACCACCAACTCCACAACCTAGTTTGC CAACAAGGCCTAGTGATGGTACAACAGTCTCTCATGTCACCACAACTGTTCCATCCACAAACCTTCCTCCTACAATAATT TCCCCACCACAACCACCAACAAATGCTGTTACCACCACAACCAATGCTGCTACCACCACAACCATAACCTGTCCAACAGT AGTAGCCAACCCTAGAAACACATCACAAGCTGCCACTGCCGCCGCCACCACTCCCACCAACAACAATAATGTTCCATATT CTTTGCCCAATATGAACCTTTTCTCCTCATCCAACTCCACCTCTTCTTCTACAGCCTCCGATGAAGACCTGGAAGAGAAG TACAGGAAGAAGAGAAAATGGAAGGACTACTTCAGGAGGCTCACGAGGCAGGTCTTGTCCAAGCAAGAAGAAATGCAGAA GAGGTTCCTGGAAGCCATAGACAAGCGTGAGAGAGAACAAATCGCGCAGCAAGAAGCTTGGAGGGCGCAAGAAATGGCAA GGATCAATAGAGAACATGACCTTCTTGTTCAAGAAAGATCAACAGCGGCTGCAAAAAATGCAGCGGTCATTGCATTTTTG CAAAAGTTATCAGGTCAGCAGAGCCCGATAACACAGCCTGCAGGGGCCAACTTTCTCCCACAAACACCGCAGCCACAATC GCAACCGCAACAATCACAGCAACTGCCACAATTGCATCTGCAACTGCAACCACAACAGCAACAACCACAACCACTAGTGT TGCCGCCACCAGTATCAAAACCACAGCCACCACAACAACCTCACCAGCAACAGCTAGTTCCACATCCATTGGCTTCAAAC AACAACATGGAAATCCAAAGCATGAGCAATGGTCATAACAATGGCACTCCACTAAGCTCTTCTAGGTGGCCAAAAGCTGA AGTTCATGCTCTCATCAAGATAAGGACAAGTCTTGAAGCCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAG AGATATCAGCGGCGATGCAGAGGATTGGGTACAACAGGAATGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAG TACTTCAAGAAGGTCAAAGAAAGCAACAAGCAGAGGCGTGAAGATAGCAAGACATGTCCCTATTTTCACGAACTTGAAGC CCTCTACAAGGAAAAGAGCAAAACACAGAACCTATTTGGTGCTTCAATCCACAACATGAGGACCAATGAGATGATGGAGC CATTGATGGTGCAGCCGGAGCAGCAGTGGAGGCCTCCCCCTCAGTATGAAGAATCGGTTAAGAAGAATGATGAAACAAAA GAAAGAGAGCAGGAAGAAGAAGAGGAAGATTATGATGAAGAAGAAGGAGAAGGAGATAGCATGGAAGAAGATGGAGGAGG GAACCGTTATGAGATTGTGACAAATAAACTTTCTTCTGTGGACACCGTTGAATGAGACAAGATAAGGAAGTTTCTGATTG GATGGTGGAGTTTTCTTGGATTTTTAAATTTTTTTTCTTTCATTTGAGTATTACAACTTTGCAAATGTCTGAACTCTGAA CATACATGTTAGCATTCACTTTAAGATAAAAGCATATGAAACTTGTTTTCTGAACCGGATAAATTTTTTTTCATATTGCA TTCAAGTCAACTGATATGATATTCAGAGAGTCATTGAATTCATGGCACAAACGCCTGCAGCATAAAAGTTCAATTCTTCA ATTATGATGAGGCTTATAAAAGCATGCCCATCTGGTGCTGGTGCTGCACAATGTACCTATCTGACACAGCTTTCTGTTGA TGGGCCAGCTTGAAAGTAGATCATTGGAGTTGTGGGTCAGATTCAAGCCGTCATGAAACTGGGATCAGAGATTTAAACAC TTGAGAACAGTTCACATGGGCCAGCAAAGCATCTTAACTAGTGGGGGTATACATGTGTTTTAGTTGAATAAATTTATGTG TAAAGTGTACAAATTGAATATGATGACAGAGAAAGAGGTCCCAAAGGATTTAAAAAATAAAATAAAAAGGAGTCACTTGC AAGTCTTGTAATTTTCCTTTCAGTTCCATTATATGGTACTAGCATTCTGTTTCTGTTTGTGTTTGAATTTCATTTTCTTG CAAGTTTTAATTTACTAATTGTGTGTGAAATAGCTTAGTGTATGATTGAATACAAGTAGAGTCAATCAAAACACATTAAT CTTAATTCATCAGTTGAGTTCCGTTTACTTTTTAGTCGTTATCACTAGTAGCAATGGGTATATCCACACATACACTTAAA TAGTAATTTTTCACCATTGACTTTACAGCTTGGAAGAATTCAGAATATATATGGATGTCGCTACTGATCATGTGTAATGC TGTCATAGAGGAAGTGTTGAGTTTGTTGAAAGGGAAAGTGGTTCAGTGACAGGAAATACA
CDS sequence (LotjaGi5g1v0290900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGCTGGGAGAACAAGAATCAGTGTTGGACACCTCCATGCCGCTGCCGCTGCCGCTGCCACCACAGGATGGCGC TAACGGCGGTGAGGAGAAAGGAAGAGAAGGCAGTGGTGGTGGAGAGTTAGATGAAGATGGTGGTGACAAGATCGGTAGCG GTGGAAGCCGGTGGCCCCGGCAAGAGACGTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTGTTTCGTGATTCA AGTCTTAAGGGTCCACTCTGGGAAGAAGTTTCAAGGAAACTAGCAGGATTGGGTTATCACAGAAGCGCAAAGAAGTGCAA GGAGAAGTTTGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGTAGAAGTGCCAAACCAGAAGGAAAAACTTATA GATTCTTTGATCAGTTACAAGCCCTAGAGAAACAATTCTCACTCTCTTACCCTCCACAACCGCAACTGCAACCGCAACCA CCAACTCCACAACCTAGTTTGCCAACAAGGCCTAGTGATGGTACAACAGTCTCTCATGTCACCACAACTGTTCCATCCAC AAACCTTCCTCCTACAATAATTTCCCCACCACAACCACCAACAAATGCTGTTACCACCACAACCAATGCTGCTACCACCA CAACCATAACCTGTCCAACAGTAGTAGCCAACCCTAGAAACACATCACAAGCTGCCACTGCCGCCGCCACCACTCCCACC AACAACAATAATGTTCCATATTCTTTGCCCAATATGAACCTTTTCTCCTCATCCAACTCCACCTCTTCTTCTACAGCCTC CGATGAAGACCTGGAAGAGAAGTACAGGAAGAAGAGAAAATGGAAGGACTACTTCAGGAGGCTCACGAGGCAGGTCTTGT CCAAGCAAGAAGAAATGCAGAAGAGGTTCCTGGAAGCCATAGACAAGCGTGAGAGAGAACAAATCGCGCAGCAAGAAGCT TGGAGGGCGCAAGAAATGGCAAGGATCAATAGAGAACATGACCTTCTTGTTCAAGAAAGATCAACAGCGGCTGCAAAAAA TGCAGCGGTCATTGCATTTTTGCAAAAGTTATCAGGTCAGCAGAGCCCGATAACACAGCCTGCAGGGGCCAACTTTCTCC CACAAACACCGCAGCCACAATCGCAACCGCAACAATCACAGCAACTGCCACAATTGCATCTGCAACTGCAACCACAACAG CAACAACCACAACCACTAGTGTTGCCGCCACCAGTATCAAAACCACAGCCACCACAACAACCTCACCAGCAACAGCTAGT TCCACATCCATTGGCTTCAAACAACAACATGGAAATCCAAAGCATGAGCAATGGTCATAACAATGGCACTCCACTAAGCT CTTCTAGGTGGCCAAAAGCTGAAGTTCATGCTCTCATCAAGATAAGGACAAGTCTTGAAGCCAAGTATCAAGAAAATGGA CCAAAAGCTCCATTGTGGGAAGAGATATCAGCGGCGATGCAGAGGATTGGGTACAACAGGAATGCCAAGAGGTGCAAGGA GAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGCAACAAGCAGAGGCGTGAAGATAGCAAGACATGTC CCTATTTTCACGAACTTGAAGCCCTCTACAAGGAAAAGAGCAAAACACAGAACCTATTTGGTGCTTCAATCCACAACATG AGGACCAATGAGATGATGGAGCCATTGATGGTGCAGCCGGAGCAGCAGTGGAGGCCTCCCCCTCAGTATGAAGAATCGGT TAAGAAGAATGATGAAACAAAAGAAAGAGAGCAGGAAGAAGAAGAGGAAGATTATGATGAAGAAGAAGGAGAAGGAGATA GCATGGAAGAAGATGGAGGAGGGAACCGTTATGAGATTGTGACAAATAAACTTTCTTCTGTGGACACCGTTGAATGA
Protein sequence (LotjaGi5g1v0290900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQLGEQESVLDTSMPLPLPLPPQDGANGGEEKGREGSGGGELDEDGGDKIGSGGSRWPRQETLALLKIRSDMDAVFRDS SLKGPLWEEVSRKLAGLGYHRSAKKCKEKFENVYKYHKRTKESRSAKPEGKTYRFFDQLQALEKQFSLSYPPQPQLQPQP PTPQPSLPTRPSDGTTVSHVTTTVPSTNLPPTIISPPQPPTNAVTTTTNAATTTTITCPTVVANPRNTSQAATAAATTPT NNNNVPYSLPNMNLFSSSNSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLSKQEEMQKRFLEAIDKREREQIAQQEA WRAQEMARINREHDLLVQERSTAAAKNAAVIAFLQKLSGQQSPITQPAGANFLPQTPQPQSQPQQSQQLPQLHLQLQPQQ QQPQPLVLPPPVSKPQPPQQPHQQQLVPHPLASNNNMEIQSMSNGHNNGTPLSSSRWPKAEVHALIKIRTSLEAKYQENG PKAPLWEEISAAMQRIGYNRNAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKSKTQNLFGASIHNM RTNEMMEPLMVQPEQQWRPPPQYEESVKKNDETKEREQEEEEEDYDEEEGEGDSMEEDGGGNRYEIVTNKLSSVDTVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 57 | 57 | - | – | |
| PANTHER | 26 | 630 | 605 | 1.4E-235 | – | |
| PANTHER | 26 | 630 | 605 | 1.4E-235 | – | |
| MobiDBLite | 29 | 51 | 23 | - | – | |
| SMART | 54 | 116 | 63 | 0.014 | ||
| Pfam | 56 | 142 | 87 | 7.2E-19 | – | |
| CDD | 56 | 121 | 66 | 2.04563E-22 | – | |
| ProSiteProfiles | 56 | 114 | 59 | 6.922 | ||
| Gene3D | 58 | 120 | 63 | 7.4E-25 | – | |
| MobiDBLite | 150 | 205 | 56 | - | – | |
| MobiDBLite | 153 | 168 | 16 | - | – | |
| MobiDBLite | 169 | 189 | 21 | - | – | |
| MobiDBLite | 365 | 456 | 92 | - | – | |
| MobiDBLite | 365 | 402 | 38 | - | – | |
| MobiDBLite | 403 | 424 | 22 | - | – | |
| MobiDBLite | 425 | 455 | 31 | - | – | |
| ProSiteProfiles | 449 | 513 | 65 | 7.178 | ||
| SMART | 453 | 515 | 63 | 0.77 | ||
| Pfam | 455 | 542 | 88 | 3.2E-22 | – | |
| CDD | 455 | 520 | 66 | 1.78199E-26 | – | |
| Gene3D | 457 | 519 | 63 | 3.2E-27 | – | |
| MobiDBLite | 574 | 638 | 65 | - | – | |
| Coils | 583 | 618 | 36 | - | – | |
| MobiDBLite | 596 | 615 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0290900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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