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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0291000 |
| Transcript ID | LotjaGi5g1v0291000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-2; TAIR: AT1G76880.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2; TrEMBL-Plants: tr|G7ICZ1|G7ICZ1_MEDTR Trihelix transcription factor GT-like protein; Found in the gene: LotjaGi5g1v0291000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60782677..60786362) extracted from Lotus japonicus Gifu genome v1.2.
CACAACAGATAGAAAGAGAGAGATAGAGGGAGCGCTTTCACATACGATATATACACAAACTGAAACATATCCATAAAATA AAAACCCATCGAAATTCAAAGAATTCACCACCCTTATTTTTTTCTTTCTTTCTTTCTCTGTTCATATATTTTTAATTTTT CTCCTATCTATCTATCTATCTATCTATCTATCTATTTCTGCTGCTGTAATTGCTGTTTTGGAGAAGAGGAAGGCAGCATG CTGGGGGACTCAGCTGTGTTGAGTGGCGGTGGTGGTGGCTCCGGGGATGCTGCGGCGGCGGCAGCGGCAGCAGGAGGTGG AGGAGCTGAGAGGACTGCAACAAGTGGTGGTGCGGTTGGATCAAATTCAGGCGATGATGAGAGGGGGAGAATTGAAGAAG GTGAACGTAGCTTCGGCGGCAACCGGTGGCCGCGGCAAGAGACTTTAGCGCTGTTACGGATACGTTCCGACATGGACGTG GCGTTTCGAGATGCAGCTGTTAAAGGTCCCTTGTGGGAAGAAGTCTCCAGGTGAATTATCTAACATCTATTTTATGGCTT TGTCTAATCGAATTCACTTCAATTGATGTGAATTTTAAGGTTCTGGTTCTGGGATTTTTTTTAAAGTAAAAATGGAAAAT TGATGTGGGATCTGGGAATTCAATTTTCATTTCTGGAAATGTATTCCACTAACTTCAATCCCATCATTTGAACTTTGCTT CCTTTTCCAGTGGTTACCTTTTGTGTTTTTTTCTTTTTTTTTAAAATCCTCCTTTTATTTTTTTGGTTCTGTTCTCTTTT GGAGCTTGAACTTGAAAACTAAAATTAAAAGAATTGAGTTGTGCACGCTCTATGATTTGGGTGTGATTTGCTTTTCTGAC ACTCACCTTGATTCATGTCCTCTTTTCCAAATAAGTTCCCCCCACTTGAATTGAGTAACCAAAAAGCAAGATTTTCTTCC CTCTTTACTTCGGTTACCGACTCCAATGGGAAACTAAGGTGGAAAGAGATTTCTCAAATCATCTAACTCAGGTTCATGTT TTTTTCGTGGGAGACATTTCCGTTCATCAATTCATGGAAATTGTTATAAAAAAAATTCCAATCACATCAACTTTCATATT TTAATTTCTCCCATCTCATCACTTTCAGTTACTTGATTTCTTTTAATTAATATTTACCCTTGCATCTTGAATTCATCTCA TTTTTATTTTTTTTATTCTATGATGTTTATCTTACGCTCCCGATGCTTTATATCCTTTGTCTTTTAGCTGAACCTGATGA GATAAACTCTGAAATTTAATATTTATTTTTTATTTGTTTTCATTTATCTTGTTTTTGGCTACTAGGAAACTGGCTGAGCT TGGTTATCACAGAAATGCCAAGAAGTGCAAAGAGAAATTTGAGAACGTGTACAAGTACCACAAAAGAACCAAAGAAGGTA GAAGTGGGAAATCAGATGGCAAAACTTATCGTTTCTTTGATCAATTACAAGCACTTGAGAATCACCCTTCACTTCAATCA CCAAACTCATCAAATTCAAGACCACTACCGCCGCCGCCACCGCAACCACCAGCACTAGTGGTAACACCTGCAGCAACAAC AGTGCCAATGCCACTACCCCATGTCAGTACTGTTCCATCAACAACTACCACACCACCGAATATACCCATGCCTCAAGGCA TTGCTATTTCCACCACCCCATCAATGAACCTCACCAACACCATCCCTTCATTCCCAACATCAAACCCTACAAACTTCCCT CCATCAACAGCAAACCCTTCCAACACAACCACCCCAATTTCCTTCCCTACAATTCCAATGGATCTCTTGTCCAACTCCAC TTCTTCCTCCACCTCCTCCGATGAAACGCTCGAAGGGAGGCGGAAGAGGAAGCGGAAATGGAAGGACTTCTTTGAGAGAC TCATGAAGGAAGTGGTTGAGAAGCAAGAGGACCTGCAGAAAAAATTCCTGGAAGCCGTAGAGAAGCGCGAACATGATAGA ACCGCAAGGGAAGAAGCGTGGAGAGTGCAAGAGATGCAAAGGATCAATAGAGAGAGGGAAATTCTAGCACAAGAGAGATC CATTGCTGCTGCCAAAGATGCCGCTGTAATGTCTTTCTTACAGAAGATAGCTGAACAGCAAAATTTGGGACAAGCATTGA GTAACATTGTACAACCACCGCGGCCACCACAACCGGTAACACAACCAAGTGCAGCACCACCACCAGCACCAACGCCAGCA CAAGGACAAGCACAAATTGTACAACAACAGCAACCAGTAGCACCAGTTACTCAACCTGGCCCGCCACCAACACAGACTGT GATGGCGGGCCAGGTTGGGTTGGTCCCACAACAAGGGGTGACTGGCATGGAAATTGTGAAAGCTGATAATGGGGAGAATT CCATGGGGGCGAGCTCTTCTAGGTGGCCAAAAGTGGAGGTTGAGGCATTGATAAAGCTGAGAACGAGCTTGGATTCAAAG TACCAAGAGAATGGACCTAAAGGCCCTCTTTGGGAGGAGATCTCAGCCTTAATGAGGAACCTTGGGTACAACAGGAATGC CAAGAGGTGCAAAGAAAAATGGGAGAACATCAACAAGTACTTTAAGAAAGTGAAGGAGAGCAACAAGAAGAGACCGGAAG ATTCCAAGACTTGTCCCTATTTCCACCAGCTGGATGCGTTGTACAGGGAGAAGAAGAGTCAGGTGGTGGTGCGGCCGCCG GAGAGCTCGGCAGCGCCATTGATGGTGCAGCCGGAGCAGCAGTGGCCTCCTCAGCAGAAAATTACAAGGGATGTGACCAT GGAAGACGCAGAGAATGACCCCATGGACCAGCATCATGAAGATGATGAAGACGATGTAGAAGATGAAGATGAAGAGGGTG AAAGTGGTGGTAGTGGTAGTGGTGGTGGGGGGGAATTATGAAATAGTGGCAAGCAAGCCTGCTGCTGCAGCAGCTGAGTA GTGTGCAAAATGGACCCAAAAGAAAATGCAGCAGCAATTAACTATCAAAAGCAGTGAGGTGGGGTCAAAGAGAGTGCAGG GGTTGTCGGAAAGTGGAGGTTGCGGTGGTTGCGGTGGCGGGTATTGGTGGTTGCGGTGGTGGTGGATGGAGAGTATGTTG TGTGTGTGAGTTTGTGGAAGAATTTGAATATACAAGTGCGGTGGAATGACACATGGACATGGGGAGATGGGGTCTGGTCA GTAAGATTATATGTTTTTCAAGTTTATAAATTTGTTTATTTTTTTTTTGGATAATAAATAAGTTCGGATCAGAGAGGAAT TTAAGATAGAGAGGATTCCAAAATAATGGAGGAGTAATAAACAAAAGAGAGACCTTAATTAAGGTTGTAATTTTATTTTA TTTTTTCATTTTCAAATCTTGTTTTTATGTTTATGGTGGTGTAAATGGGAGAAGATTAATTGGGGTTCGTCTTAATTTTT CTCTATTTTACAATTTTGACTTCTTGTTACTCTTCTTATTATGCTTGCTTTAATTTCCTTGACTTTTCCTTCTTATCTTT CCTTTGTCTTCCTTTTCTCTTTAATTTGCACTAACTCATTAGCCGTTTGTCAGAATAGTAGATCAGATAATTATGGGGTT TTATTTTTCTTTATGTGCTGAAAAAATGGATGTAAAACATGTTTAACATTGAACATGTGAGGGGAACAAAACAAAATTAA AGGAAG
CDS sequence (LotjaGi5g1v0291000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGGGGACTCAGCTGTGTTGAGTGGCGGTGGTGGTGGCTCCGGGGATGCTGCGGCGGCGGCAGCGGCAGCAGGAGG TGGAGGAGCTGAGAGGACTGCAACAAGTGGTGGTGCGGTTGGATCAAATTCAGGCGATGATGAGAGGGGGAGAATTGAAG AAGGTGAACGTAGCTTCGGCGGCAACCGGTGGCCGCGGCAAGAGACTTTAGCGCTGTTACGGATACGTTCCGACATGGAC GTGGCGTTTCGAGATGCAGCTGTTAAAGGTCCCTTGTGGGAAGAAGTCTCCAGGAAACTGGCTGAGCTTGGTTATCACAG AAATGCCAAGAAGTGCAAAGAGAAATTTGAGAACGTGTACAAGTACCACAAAAGAACCAAAGAAGGTAGAAGTGGGAAAT CAGATGGCAAAACTTATCGTTTCTTTGATCAATTACAAGCACTTGAGAATCACCCTTCACTTCAATCACCAAACTCATCA AATTCAAGACCACTACCGCCGCCGCCACCGCAACCACCAGCACTAGTGGTAACACCTGCAGCAACAACAGTGCCAATGCC ACTACCCCATGTCAGTACTGTTCCATCAACAACTACCACACCACCGAATATACCCATGCCTCAAGGCATTGCTATTTCCA CCACCCCATCAATGAACCTCACCAACACCATCCCTTCATTCCCAACATCAAACCCTACAAACTTCCCTCCATCAACAGCA AACCCTTCCAACACAACCACCCCAATTTCCTTCCCTACAATTCCAATGGATCTCTTGTCCAACTCCACTTCTTCCTCCAC CTCCTCCGATGAAACGCTCGAAGGGAGGCGGAAGAGGAAGCGGAAATGGAAGGACTTCTTTGAGAGACTCATGAAGGAAG TGGTTGAGAAGCAAGAGGACCTGCAGAAAAAATTCCTGGAAGCCGTAGAGAAGCGCGAACATGATAGAACCGCAAGGGAA GAAGCGTGGAGAGTGCAAGAGATGCAAAGGATCAATAGAGAGAGGGAAATTCTAGCACAAGAGAGATCCATTGCTGCTGC CAAAGATGCCGCTGTAATGTCTTTCTTACAGAAGATAGCTGAACAGCAAAATTTGGGACAAGCATTGAGTAACATTGTAC AACCACCGCGGCCACCACAACCGGTAACACAACCAAGTGCAGCACCACCACCAGCACCAACGCCAGCACAAGGACAAGCA CAAATTGTACAACAACAGCAACCAGTAGCACCAGTTACTCAACCTGGCCCGCCACCAACACAGACTGTGATGGCGGGCCA GGTTGGGTTGGTCCCACAACAAGGGGTGACTGGCATGGAAATTGTGAAAGCTGATAATGGGGAGAATTCCATGGGGGCGA GCTCTTCTAGGTGGCCAAAAGTGGAGGTTGAGGCATTGATAAAGCTGAGAACGAGCTTGGATTCAAAGTACCAAGAGAAT GGACCTAAAGGCCCTCTTTGGGAGGAGATCTCAGCCTTAATGAGGAACCTTGGGTACAACAGGAATGCCAAGAGGTGCAA AGAAAAATGGGAGAACATCAACAAGTACTTTAAGAAAGTGAAGGAGAGCAACAAGAAGAGACCGGAAGATTCCAAGACTT GTCCCTATTTCCACCAGCTGGATGCGTTGTACAGGGAGAAGAAGAGTCAGGTGGTGGTGCGGCCGCCGGAGAGCTCGGCA GCGCCATTGATGGTGCAGCCGGAGCAGCAGTGGCCTCCTCAGCAGAAAATTACAAGGGATGTGACCATGGAAGACGCAGA GAATGACCCCATGGACCAGCATCATGAAGATGATGAAGACGATGTAGAAGATGAAGATGAAGAGGGTGAAAGTGGTGGTA GTGGTAGTGGTGGTGGGGGGGAATTATGA
Protein sequence (LotjaGi5g1v0291000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGDSAVLSGGGGGSGDAAAAAAAAGGGGAERTATSGGAVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMD VAFRDAAVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLQALENHPSLQSPNSS NSRPLPPPPPQPPALVVTPAATTVPMPLPHVSTVPSTTTTPPNIPMPQGIAISTTPSMNLTNTIPSFPTSNPTNFPPSTA NPSNTTTPISFPTIPMDLLSNSTSSSTSSDETLEGRRKRKRKWKDFFERLMKEVVEKQEDLQKKFLEAVEKREHDRTARE EAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALSNIVQPPRPPQPVTQPSAAPPPAPTPAQGQA QIVQQQQPVAPVTQPGPPPTQTVMAGQVGLVPQQGVTGMEIVKADNGENSMGASSSRWPKVEVEALIKLRTSLDSKYQEN GPKGPLWEEISALMRNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKKSQVVVRPPESSA APLMVQPEQQWPPQQKITRDVTMEDAENDPMDQHHEDDEDDVEDEDEEGESGGSGSGGGGEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | - | – | |
| PANTHER | 1 | 607 | 607 | 2.0E-256 | – | |
| PANTHER | 1 | 607 | 607 | 2.0E-256 | – | |
| MobiDBLite | 46 | 61 | 16 | - | – | |
| SMART | 60 | 122 | 63 | 0.0049 | ||
| Pfam | 62 | 148 | 87 | 1.3E-18 | – | |
| CDD | 62 | 127 | 66 | 6.76612E-25 | – | |
| ProSiteProfiles | 62 | 120 | 59 | 6.713 | ||
| Gene3D | 64 | 126 | 63 | 5.4E-25 | – | |
| MobiDBLite | 151 | 279 | 129 | - | – | |
| MobiDBLite | 161 | 176 | 16 | - | – | |
| MobiDBLite | 189 | 270 | 82 | - | – | |
| Coils | 284 | 304 | 21 | - | – | |
| MobiDBLite | 371 | 423 | 53 | - | – | |
| MobiDBLite | 374 | 396 | 23 | - | – | |
| ProSiteProfiles | 450 | 514 | 65 | 7.306 | ||
| SMART | 454 | 516 | 63 | 2.8E-4 | ||
| CDD | 456 | 521 | 66 | 1.83004E-29 | – | |
| Pfam | 456 | 543 | 88 | 3.9E-22 | – | |
| Gene3D | 458 | 520 | 63 | 9.7E-28 | – | |
| MobiDBLite | 549 | 622 | 74 | - | – | |
| MobiDBLite | 563 | 577 | 15 | - | – | |
| MobiDBLite | 591 | 611 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0291000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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