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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0302300 |
Transcript ID | LotjaGi5g1v0302300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G46460.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|C5DLJ0|IRC6_LACTC Increased recombination centers protein 6; TrEMBL-Plants: tr|A0A151QPV8|A0A151QPV8_CAJCA Ubiquitin carboxyl-terminal hydrolase 13; Found in the gene: LotjaGi5g1v0302300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61978254..61979140) extracted from Lotus japonicus Gifu genome v1.2.
AAGTACACTCAAGGCATGCATGATTGGCATTGGGGTTGCGAGAGGTTCATAAATTTATCTAAGCTTCCTAACACCCATGG CTTTATCAAGAATGTTACTTGTATTTTTGAAGCTGACATTTCTGTTACAAGTCGAGATGAACGTGCGAATCATGCATGTC AAGTAGCTAGCAAACCTGCTGCCAGTGTTGAAAATGTTGCTAATCCTTTAGCGTCAAGTGGTGGTGAGCTTGTGGATTTC AAGAATTTTGGGAAAATTGAAGAAGCTTTTGTTCCACTGTTGGAGGAAGTTTGCTCGTGGCATCCCTCGCTAATTGACTG CCAGCGCAAGAGGAAGAGAAGTCCCAGGTTCACAGAATGGGCATTCACAGCTTTGGGTCAAGTTTTACATTTTCTTAAAA ATAAAAAGGTCAAAGATATGAATGAGGATGCTTGTAGTCATCTCGGATTTTTATGGGAGGAGCTTGAGACTTTCAAATTT GACTTGACCTGGCTGCAACCTCATGTTCAATCTGCCTTAAGTAAGAAAAGTTTTGTAGAGAAAGTTGTGCAGCTGAAAAC ATTAAAGGAGAATGTGGTAGCTCTAGACATGGAATTCAAATCGGTGGAGGAGAAGCTATTTTCCGCAAAGGAAGATCTTG AAAAAGCAATTCGAGATTTGTCAAAAGAAGGCTTCCAAGAAAGGGACTTGGATGCTGAACTGGGATATGGAGGACCTTAG ACTCGTGTCATTAAAGAGTTCGCGTCATTTGTCGCTAATAACTTGTGTATTTGTGACTAAATGAATATGGATGTAGGTGT TGATGGCTCTGTTGGCTAAAGTGATTTTTAATTTAAATTTTGTCATTTTATTAGACCACTGCCGGTTTCTATGGAAAAAT GTATAAA
CDS sequence (LotjaGi5g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGATTGGCATTGGGGTTGCGAGAGGTTCATAAATTTATCTAAGCTTCCTAACACCCATGGCTTTATCAAGAATGT TACTTGTATTTTTGAAGCTGACATTTCTGTTACAAGTCGAGATGAACGTGCGAATCATGCATGTCAAGTAGCTAGCAAAC CTGCTGCCAGTGTTGAAAATGTTGCTAATCCTTTAGCGTCAAGTGGTGGTGAGCTTGTGGATTTCAAGAATTTTGGGAAA ATTGAAGAAGCTTTTGTTCCACTGTTGGAGGAAGTTTGCTCGTGGCATCCCTCGCTAATTGACTGCCAGCGCAAGAGGAA GAGAAGTCCCAGGTTCACAGAATGGGCATTCACAGCTTTGGGTCAAGTTTTACATTTTCTTAAAAATAAAAAGGTCAAAG ATATGAATGAGGATGCTTGTAGTCATCTCGGATTTTTATGGGAGGAGCTTGAGACTTTCAAATTTGACTTGACCTGGCTG CAACCTCATGTTCAATCTGCCTTAAGTAAGAAAAGTTTTGTAGAGAAAGTTGTGCAGCTGAAAACATTAAAGGAGAATGT GGTAGCTCTAGACATGGAATTCAAATCGGTGGAGGAGAAGCTATTTTCCGCAAAGGAAGATCTTGAAAAAGCAATTCGAG ATTTGTCAAAAGAAGGCTTCCAAGAAAGGGACTTGGATGCTGAACTGGGATATGGAGGACCTTAG
Protein sequence (LotjaGi5g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHDWHWGCERFINLSKLPNTHGFIKNVTCIFEADISVTSRDERANHACQVASKPAASVENVANPLASSGGELVDFKNFGK IEEAFVPLLEEVCSWHPSLIDCQRKRKRSPRFTEWAFTALGQVLHFLKNKKVKDMNEDACSHLGFLWEELETFKFDLTWL QPHVQSALSKKSFVEKVVQLKTLKENVVALDMEFKSVEEKLFSAKEDLEKAIRDLSKEGFQERDLDAELGYGGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 35 | 35 | 9.805 | ||
SUPERFAMILY | 3 | 39 | 37 | 3.76E-5 | ||
PANTHER | 70 | 232 | 163 | 1.7E-54 | – | |
PANTHER | 70 | 232 | 163 | 1.7E-54 | – | |
Coils | 180 | 218 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0302300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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