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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0304500 |
| Transcript ID | LotjaGi5g1v0304500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT4G25500.1 arginine/serine-rich splicing factor 35; Swiss-Prot: sp|P92965|RS40_ARATH Serine/arginine-rich splicing factor RS40; TrEMBL-Plants: tr|I1NGP9|I1NGP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62272228..62275275) extracted from Lotus japonicus Gifu genome v1.2.
TTCTGTTCAGGGAAAATGAGGTCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGTTGGAGCGGCTTTT TAGACGATATGGGAAGGTTGATAGGGTTGATATGAAGTCTGGTGAGCTCCCCCCCCCTCCCCCATTTTCATTCTCTTTTG TATATTTTAAGATGGATGCCTTAATAGTATTCCAATCTCTCCGGGGTTTTTACCACGCGGAAAGAGTTTAATGGTTAAAC GTCAAGCTAATAAAAAGTTAAATTTTGAAAACAAAAATTCTGTCCTCCTTAAATCTTGTAGTTAAATCATTTTTAACTTG GAATTTCATTGGGTGTATAATCGTTATTTTATACATCAGTTTTAGACCTGACTGTTGCTTCGTTTGGTTCTATCCTTTTT ATAAAGGAGCACTAAACTTAATGTGATTTGGGAACTATCGACTGGATCAATGTCAATATCACTTAATTCAGTAATTAAAT AGAAAGTATATATTACATATGTGCTTCTGGGGATTTCAGGACATGTTATACTAGGATTGTGTCTCAGTTGAGAACTGTCC TGTTAACAAGATGTGGCTGTTTAAATAATAAATTTGGTTGATTTATAATTTGAGCTCTTTCAACTTAAGAGCTGGATACA CTACACAATATATGGATCGTCATCCAGAACAGCGAGTTCTAGATTGAATTACGAAATAAACATTGCATGCGTGGCATATT TGCAATAAGACCTTGAACACATCCAGTGGCAATGGAGCAACATCAGAGACTGTCCCATATATGACATCAGAACCTGTGAT TCAGCAGCTACAAAGTATCTTCCAAGATCACTGGTTCAGTTTCAAGAGTTTGACCTTAGTGTAGGGCACCTTGTTGAGCA TTTGTCGGGGGTTCAAGATATCTTTAAGTAGAAAATCATGTTTTTTGAAGCATCAACCCCCATACTCAACATTTTCTTTG ACGCAGGACTATCTTTGGCATATCCATTTTCCCCCAAGCTAATGGATGGGCTTTTCAGAAATCCGTTTCCTGCCTGTGAT GCACATCTTCTTTTAAAGAAGAATCGTTCAATTTGATCTGCAATGGCACAACTGTTCCACGTATTCCTCTGTCACACTTG CCTTCCAATTTTCATGCCTTTTGCACAGCCTTCACTTTTGGACATGTTGAGGTTGAAATATAGCCAACCTCACAGCGGAG GCAGCAGAATACATGGGGAGGCCACTCACTTTCCATTGACCCACCATGAGAACTACACTTTTGGGTTCTTGTTGTTGACA CCACTTTGTTTATAACTCAAGGTCTGTTACTAATTCTACTGGTCAAATTAGTTTATAGAAAATAAGGAGATCAGAATTTT AATTTCCATGCAGTAAGTATTGTGACTGTTTGTGCATAGCTGAAAGGTCAGCTTTCACATCCGCAGTGTTCATTGAGTGG ACTAATACACTGAATTGCCTCTTCAGTTTTATTATTTATTCTAATTTTATAAAACTTATCATGGTCTTCAGGATTTGCTT TTATCTATATGGAAGATGAGAGAGATGCTGATGCTGCTATTCGTGCTCTTGATCGGGCAGAATTTGGTCGGAAGGGGCGG AGACTTCGTGTGGAATGGACAAAGGTAACATATCATTAGTCATCTATGACAAAAATGTTGTTTTTTCGTACAATGTTCAT AAGCATTAAACATACTGTTCACAGCATGAGCGTGGCATCAGAAAGCCTGCTGCTCCAAGAAGATCATCAGCTACTGCGAG GCCATCAAAGACTTTATTCGTGATTAATTTTGATACATTCCATACAAGAACAAGGGACTTGGAGAGACACTTTGAACCGT ATGGGAAGATAGCCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTTGTAAAGCA CTGGAAGCCACAAATAATAGGTAATTCAGTGTGTTTGCAAATTAGTTTCAGATAGAATATTCCAAGCATCTTTATCTTGA TTCAGATTTATTTTCTTCTTTGAAATGTTTCATTATCCTCTAGTCATTACTCATTACTTTATTATTGTTGGAATTCTGGT GGATTTTGGTTTATGACTTGGTTCGGCCAAATATTGTGATATCAGATAGGGGTGCCTTTGATTTCTGGTTCTAAGTCAGT TTTAGGTTTGTAGTATGTTTTTTAAATTGGCAATTTGGCATACAACTGGAGTGGTAACACAAGTTTGTTTCTAATGCTGA TGTGCAGCAAGTTATTGGACCGGGTTATTTCTGTTGAATTTGCTGCTAAAGATGATGATGATAGGAGAAATGGATATAGC CCAGAGAGAGGCCATGATAATCGTCATGATAGGAGCCGTGATGGAAGGCGATCACCTAGTCCTTATCGCAGAGAAAGGGG TAGTCCTGATTATGGTCGTGGGGCCAGTCCTTACAAGAGGGAGAGGAGCAGCCCTGACTATGGCCATGGCCGCAGCCGTA GTAGAAGCCCCCACCGCAGAGTGCGAGCTAGCCCTGCTCACGGGCGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGGAT GGCTCTGATCTTGTTCGTGACTCCAGCCGCAGTCCTTTTCACAAAGAGCGAGGGAGAACCGATCGGTCTTCCTCCCTTAG TCCCAAAAGAAGAGGGAGGACAAGCCCTCAAAATGGTGGTGACTCTAGCCGTAGTCCTTATGATCCTGTGAAGGCTACTA GCCCTGAAAATGGCGAGATCAAACATAGTCCTGATGCAAGAGGGAATCCCAGCGATTACAATGGATATGGAGGAGGGAGC CCAGATAATATGCGTGAGCCTGAACCTGAGCCTGAGGCCGAGCCTGAGCCCAGGGACAGTCCCAACTATGGTGGTCCTGA AAGTCCCATGCATGAACGATACCGCAGGTTTGTGAACATTTATTATTTCAGAGTTTTTGTTGCCTTGTTTTATTTTTCAG CCATCTTTACACCCACTTCGTTTGATATCTGAGTTTTATTTTTGTATATCTTTGATTATGCAGCCAGTCACCCCCTGCAG AAGAATGA
CDS sequence (LotjaGi5g1v0304500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGTTGGAGCGGCTTTTTAGACGATATGGGAA GGTTGATAGGGTTGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGATGCTGCTATTCGTG CTCTTGATCGGGCAGAATTTGGTCGGAAGGGGCGGAGACTTCGTGTGGAATGGACAAAGCATGAGCGTGGCATCAGAAAG CCTGCTGCTCCAAGAAGATCATCAGCTACTGCGAGGCCATCAAAGACTTTATTCGTGATTAATTTTGATACATTCCATAC AAGAACAAGGGACTTGGAGAGACACTTTGAACCGTATGGGAAGATAGCCAGTGTGAGGATCAGAAGGAATTTTGCTTTTG TTCAGTATGAATCAGAGGATGATGCTTGTAAAGCACTGGAAGCCACAAATAATAGCAAGTTATTGGACCGGGTTATTTCT GTTGAATTTGCTGCTAAAGATGATGATGATAGGAGAAATGGATATAGCCCAGAGAGAGGCCATGATAATCGTCATGATAG GAGCCGTGATGGAAGGCGATCACCTAGTCCTTATCGCAGAGAAAGGGGTAGTCCTGATTATGGTCGTGGGGCCAGTCCTT ACAAGAGGGAGAGGAGCAGCCCTGACTATGGCCATGGCCGCAGCCGTAGTAGAAGCCCCCACCGCAGAGTGCGAGCTAGC CCTGCTCACGGGCGTAGAAGCCCTAGTCCATATAGAAGAGAGAGGGATGGCTCTGATCTTGTTCGTGACTCCAGCCGCAG TCCTTTTCACAAAGAGCGAGGGAGAACCGATCGGTCTTCCTCCCTTAGTCCCAAAAGAAGAGGGAGGACAAGCCCTCAAA ATGGTGGTGACTCTAGCCGTAGTCCTTATGATCCTGTGAAGGCTACTAGCCCTGAAAATGGCGAGATCAAACATAGTCCT GATGCAAGAGGGAATCCCAGCGATTACAATGGATATGGAGGAGGGAGCCCAGATAATATGCGTGAGCCTGAACCTGAGCC TGAGGCCGAGCCTGAGCCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAACGATACCGCAGCCAGT CACCCCCTGCAGAAGAATGA
Protein sequence (LotjaGi5g1v0304500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDADAAIRALDRAEFGRKGRRLRVEWTKHERGIRK PAAPRRSSATARPSKTLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVIS VEFAAKDDDDRRNGYSPERGHDNRHDRSRDGRRSPSPYRRERGSPDYGRGASPYKRERSSPDYGHGRSRSRSPHRRVRAS PAHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDSSRSPYDPVKATSPENGEIKHSP DARGNPSDYNGYGGGSPDNMREPEPEPEAEPEPRDSPNYGGPESPMHERYRSQSPPAEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 87 | 87 | 1.1E-18 | ||
| PANTHER | 1 | 246 | 246 | 3.1E-117 | – | |
| PANTHER | 1 | 246 | 246 | 3.1E-117 | – | |
| SUPERFAMILY | 2 | 170 | 169 | 8.83E-35 | ||
| ProSiteProfiles | 2 | 74 | 73 | 16.654 | ||
| SMART | 3 | 70 | 68 | 1.1E-16 | ||
| Pfam | 4 | 62 | 59 | 1.7E-13 | ||
| Gene3D | 88 | 177 | 90 | 1.6E-21 | ||
| ProSiteProfiles | 95 | 166 | 72 | 16.023 | ||
| SMART | 96 | 162 | 67 | 5.7E-19 | ||
| Pfam | 97 | 159 | 63 | 3.1E-13 | ||
| MobiDBLite | 168 | 379 | 212 | - | – | |
| MobiDBLite | 168 | 228 | 61 | - | – | |
| MobiDBLite | 247 | 284 | 38 | - | – | |
| MobiDBLite | 285 | 306 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0304500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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