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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0309500 |
| Transcript ID | LotjaGi5g1v0309500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Augmin subunit 2; TAIR: AT2G32980.1 HAUS augmin-like complex subunit; Swiss-Prot: sp|O48767|AUG2_ARATH AUGMIN subunit 2; TrEMBL-Plants: tr|I3SVU0|I3SVU0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0309500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62774298..62777790) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAGGGTCCCCGTTGTTTGAATCGACCTTGGAAAAAACTGGCATCTCGTTCAGCCTGCATAAACCTCCCCCAAGCT ACTACTACTCCCCGAAATCTCCAGCGTTTTCCGGCACCGTTAGACCATATCCGCCGCCACTCGCCGTCGTTCTCCAGCAT TTCACTAAATTTTTTTCGTTGATCTACAAAAGCTGAAGTTTTCAGTTGCAAAAAAAGAGGTGGAGTTTGTTAATGTTTGA AATTTGAAAATGTCAATGGGAAGCGAGTCTAGTTGGGTTGGGAAGAAACCTGTGAAACGCATTGGGGGAATGTCCGATGC TCTGTCAATTGCTTCAGATCTCGGTTTCTCCGTGTCATCTCTCCCAACCCATCAGGTATCAGACATTCTCTCTTCGATCA TCAAACTCGCATCAATTTTCTGACAATTTGGAATTCACTAACTGTCTCTCCCTATAGGAAGCACTTCAGAATCCCTCAAC CGCTACTGGTGAGAAGGGTGAGGATTTGATCAAGGTTTTAAGAGAACTTACCACAGTCCAAAGGAAAATTGCAGATTTGC AAGTCGAACTTCAAGGTCGAAAGGTATGCCAGCCCTAATAACCATTTCGGTTTGATAAATATGGATTTGGGTCATTTGAT TTTGTTCAACTTTAAACAAATTGTCAACATTTTACTAGTTAGTTAAGAATTTGAATAACCTGTGTTGTGCTGTGTCTTCA CTTTTCACTCATTTTGAGACTTGTGAAACTTTTAGGATGATAAAAATGTAGCGCATTTGACGCATGTAAGTGAAATGGAG AAGAAGATTGAGACGTTGGAATGGATTACTACTATCCTCAAAGATGTTATTCAGAATAAGGTAACCGAAACCGACCTCAT CTGTTCATTATTCTTCTCATCTGTCGTTGTTATTGATCGGTTCATCAGCTCAAATTGTACTTTTACATTATTTTATTTGC TAAATTTGGTAGGACCGCATAATAGCTCGCCTGCAGCAACCGTATTCCCTGGATTGCATTCCTGTTGAAGCAGAATATCA GGTTGGTGTACACAAATGATGATTGAGTTAAGTTACTTGCTCTAAGAAGTCCTTGATTTGATAACCAGTTGGCCATCAAG TGGCATGTGCACACAATTGTGTGTGTATGTGTGGTTTTGATATAGTGTTAGTAGCATTACTTATTTGTACACATTTTGAT GTTTTGTATTTAGTTCCTGATTTTGCTAGGTGTTGTCTATGTGTGACAATTTTGTTACTTTGTTTGTTTGAATAGTGCAT GTTAAGTGTTAACTATTAATGCAGCATTACAGATTAAACATGATATAGTGACTTCAATTGGAGCTGTTAGAAATAAGTTC AAAGTTTCTGGTATTCATGAAAAATTATACACAGTGAGACTTGACCTAATGATTCACCATCTGTTATATATTGAAATTAG GAATATAGTTAACCACTTTCTAGGTCAACCAAGTTTTATTTGGCATCTGCAATACAGTGTGTAAAAGGCTTATTTATGCA CTGCTGGATCTAAATGAGTTCATTCAATCTTAAACCAAATGAAACCCTAAACCAAATCTCTCATGTCTAACCTTGCTCCA CCTCATCCCTACTCCCTCGTCCCTCTTTGCATTCGGAGGTTTGAACTTTGAAGGTTGTCATGAGTGTGCGAGGTTGAAGG TCGTTCTCCCTACCTTCACGCGCTGCTCCGTGTTGGAGTTCTTGGTCTGCGACTCTGTGGTCTGCCTTTGCAATTCTGGT TCTTCCTCCACGAACTCCAATTCTGGCTTCTCATTCTGCCTTTGCGATTCTGACTTGGTTCTGTAGTGCAATTTTATTTG AGACTTTGTGTTCTGGTATGTGTCTTGCTAGTGTGGTGGTTATATTAGACTTAAGTTCTTTTGGGTTTCTAAGCATTAGT TTTTAATTTAAACACCAACTTATATTTCTTATGGCTGTAAAAAAACTTCTTGTGAATGCATTATATTATGACTTAATGTG ATTTTGTGCTTATGATTTTTCAATTTAAATTATTTTAATTGTATGAATCAGAGGTTATTTTACTTTTCTATATGATTTTC TATGTATATGTATGTTATAGCGTCTAATTTTGCATTCTTATGATCTTGCACTCCCTTCCCGATTCTGTAGGATCCCTATC TTAACAACATAGTCACACTCAACATTAGTTGAAAATTGATGTAAATGTTGAACTATTATTGATATAAATTTTCAATCAAT GTAAGACTGATTTTATAATGCTTGATTAATATATTTTTCTAATTCGTGCAGAAACAATTCTCTGAGTTACTGATGAAGGC AGCTAGTGATTATGGTGCCTTGACAGCATCCGTGGCAGATTTTCAGTGGAGTCAGAACTTCAAGGAACCTCCTTCAGTTT GGGGGGTATGCTTCTAAAATCATTTTTATTATGTTAAGATAGTCTTGATATTAGGACTTTCTGTTTCCATTATGTTATAC TATTAAACCATTTTGCATCCCTGGACCCTAGTTTTCACCTACTATCTTGCATTACTTGCCTTTAATGTTACTTCAGTTGC TTGGAAGCTTCAAGAAGATGACTAAGTGATAGTGGATTTAACTTTTACTGTTATTTTATAACTTAAAAAGTTAAGATTAA TTTCAAGTCTATTTAAGTTCATTGTGACACACTAAAATTTCTCCCAGTCGATAACCTGCATATACTATAAACGAATTTTA AAATAGTCATGAATCATGATGAAAGCTTTGACAGCTTAAAGTTGATCCTGTAAAGTTTTTAATTCTTAACATGAGTTTTA GAAATTAATCTCGGTGCTTTTAAACACATTCCACTAAGTGTTTTCAAAGGCAACTAAGTGCATATACGGGCACTACTTTG AAGACAGCCTTGTGTGGAATAATGTTCATAACTTTTGTGCTTGCTACTTGCTTCTCAAATGAAATTCTTTTTTTTTTCCA GGAAATGCTTCGACCCATTCCTGTAGCTTTGGCATCTTGCACTCGGTTCTTTGAAGCCATGTCTGCCACAAGAGAGTCAT TTGCAACACTTCAAAAACTAAGAGTGGGTCATGTTGATTCCCCTGTGCCTAGGACACCAACCAGTGATCCTTCCCAAAGA CTACCAGGAGTTTCTGATTCTCTAACTTTACCTCCATCAGAGTAATTGTACAACCCGAACAATCTTGTCTTACTCTCACT CAGTTAAAAAAGAGTGTTGCATAGTTATCCAACATCCACGTATCTTTTGTGTGATATCATTTCTTCATTTGTCTGTGCAG ATTAATTCTTCATCATTGCTTTAAAATTATGTATTTGTGAGTTACAGGAACTTGTGATAATGTGTGAATTACTCTCATAG TTTCAGTGGCCTGGTATGCTATATTATTAGGGGTTACTGACTTACTGTGCAATATAAACTTCGTAGGTTGTTTCTTACAA CATTTGTTGTGTTGATAACCTTTTTTTTCTCACTATGGTTAGTTGACTTATTC
CDS sequence (LotjaGi5g1v0309500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGGGAAGCGAGTCTAGTTGGGTTGGGAAGAAACCTGTGAAACGCATTGGGGGAATGTCCGATGCTCTGTCAAT TGCTTCAGATCTCGGTTTCTCCGTGTCATCTCTCCCAACCCATCAGGAAGCACTTCAGAATCCCTCAACCGCTACTGGTG AGAAGGGTGAGGATTTGATCAAGGTTTTAAGAGAACTTACCACAGTCCAAAGGAAAATTGCAGATTTGCAAGTCGAACTT CAAGGTCGAAAGGATGATAAAAATGTAGCGCATTTGACGCATGTAAGTGAAATGGAGAAGAAGATTGAGACGTTGGAATG GATTACTACTATCCTCAAAGATGTTATTCAGAATAAGGACCGCATAATAGCTCGCCTGCAGCAACCGTATTCCCTGGATT GCATTCCTGTTGAAGCAGAATATCAGAAACAATTCTCTGAGTTACTGATGAAGGCAGCTAGTGATTATGGTGCCTTGACA GCATCCGTGGCAGATTTTCAGTGGAGTCAGAACTTCAAGGAACCTCCTTCAGTTTGGGGGGAAATGCTTCGACCCATTCC TGTAGCTTTGGCATCTTGCACTCGGTTCTTTGAAGCCATGTCTGCCACAAGAGAGTCATTTGCAACACTTCAAAAACTAA GAGTGGGTCATGTTGATTCCCCTGTGCCTAGGACACCAACCAGTGATCCTTCCCAAAGACTACCAGGAGTTTCTGATTCT CTAACTTTACCTCCATCAGAGTAA
Protein sequence (LotjaGi5g1v0309500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMGSESSWVGKKPVKRIGGMSDALSIASDLGFSVSSLPTHQEALQNPSTATGEKGEDLIKVLRELTTVQRKIADLQVEL QGRKDDKNVAHLTHVSEMEKKIETLEWITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALT ASVADFQWSQNFKEPPSVWGEMLRPIPVALASCTRFFEAMSATRESFATLQKLRVGHVDSPVPRTPTSDPSQRLPGVSDS LTLPPSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 242 | 242 | 6.2E-119 | ||
| Pfam | 19 | 209 | 191 | 2.8E-87 | ||
| Coils | 59 | 79 | 21 | - | – | |
| MobiDBLite | 218 | 247 | 30 | - | – | |
| MobiDBLite | 224 | 247 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule organizing center organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microtubule organizing center, a structure from which microtubules grow. | ||
| Biological process | Spindle assembly | The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. |
Expression pattern of LotjaGi5g1v0309500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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