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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0312800 |
| Transcript ID | LotjaGi5g1v0312800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1677 family protein; TAIR: AT3G22540.1 hypothetical protein (DUF1677); Swiss-Prot: sp|Q4ULF3|Y769_RICFE UPF0246 protein RF_0769; TrEMBL-Plants: tr|I3SJP0|I3SJP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0312800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63114775..63116081) extracted from Lotus japonicus Gifu genome v1.2.
GATGACCCTATATATGAATAAAAGAAAATGAAATGAGGGAAAAAATATGAATACAAAAAGAAGATAGAGATATGAAGTAA AATCTGAAGGAAGAGGAAATGAATGTACATATGTCCAAACCTCTATTAAATGTTAGAAAGGGCCATAGCAAAGGGCCCTC CGACCACCCTTGTCACATTTTTCTCTGCCCATGTCCCTCAGAACATGGAGGAAATTATGGTATTAATTAGCCCCTTCTTA AATTCTCATTCTCTCTCTCTTTCATCTCAAACACCATAAAACCCCTCATTGAACATCACACACCTCCTAGTTCTTGAACC AACAATCCCAAGTGAGAAAAACAGAGCAACAAGAAAGTAATCAAACCAGACCACCTCAATCATTGTGGTGTGGTCTAATC CAACCAAAGCAAAAACCATCCATTGTTTAACTCACTCTATTACACGTTTTAAGGAGAAAGATTCTCATCCTTAAAAATCT TCTTCCTTCCCCTTTCCTTGAACGTGAGAGAGATCAGTTATTATAAAGAGATCCATTGATGGATATTGAATCAGCCAAGT GTGAGTGTTGTGGATTGAAAGAGGATTGCACCCAGGACTACATCAGCGATGTGAAGGCCAAATTTGATGGGAAATGGTTA TGTGGGTTGTGCTCAGAAGCAGTGAGAGATGAAGTGAATGGAGGGAAAAAGCCATGGGCCATGGATGAAGCTGTGAAAGC TCACATGTCATTCTGCCGCAAGTTCAAAGCCAACCCTGCAGTTCGAGTCGCAGAAGGCATGAGGCAGATGCTAAGGAGAA GATCAGGGGACTTATCAACATCATCATCATCTCCAAGTTCATCAAAGAAGTATTCAAGGTCAACAAGCACTTCTCAGGTT GGGGATTCTTCATCTTTCTCATTGTACTGATGAGAAAACAGAAGAGGGTGCATGTGAGGCAGGTTGGAATAAATGTTTCT TTTATTGCATGTTTGGATCAACTTCTCATTCACCAGAATCAATTTTGAAATTCAGAAGTTACTCCGATAAGCTTCCACTT CACATCTACTTTTGGCTTCAGAATCATTTGCAAAAGAGTTTCCAAACATGTAATCAGTCTTTAAGGGCTAAGCTTTTTCT TCTTGTTATGTACAGGGAGTGTAGTTTCAGATTAAGGGTATTGACTATTTTCTTCTGCTTAATTTCTTGTCTTTGGACTC TTTTCCCCAAGCTGGTCCCAAGCTTGGTGTTCTTAATCCCTTTGTTCGTTTTTATGTCATTTTGATGTTTAAATATTGTT AATTTACTAACAACAAATTTATCTTTA
CDS sequence (LotjaGi5g1v0312800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATTGAATCAGCCAAGTGTGAGTGTTGTGGATTGAAAGAGGATTGCACCCAGGACTACATCAGCGATGTGAAGGC CAAATTTGATGGGAAATGGTTATGTGGGTTGTGCTCAGAAGCAGTGAGAGATGAAGTGAATGGAGGGAAAAAGCCATGGG CCATGGATGAAGCTGTGAAAGCTCACATGTCATTCTGCCGCAAGTTCAAAGCCAACCCTGCAGTTCGAGTCGCAGAAGGC ATGAGGCAGATGCTAAGGAGAAGATCAGGGGACTTATCAACATCATCATCATCTCCAAGTTCATCAAAGAAGTATTCAAG GTCAACAAGCACTTCTCAGGTTGGGGATTCTTCATCTTTCTCATTGTACTGA
Protein sequence (LotjaGi5g1v0312800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIESAKCECCGLKEDCTQDYISDVKAKFDGKWLCGLCSEAVRDEVNGGKKPWAMDEAVKAHMSFCRKFKANPAVRVAEG MRQMLRRRSGDLSTSSSSPSSSKKYSRSTSTSQVGDSSSFSLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 119 | 119 | 7.6E-63 | – | |
| PANTHER | 1 | 119 | 119 | 7.6E-63 | ||
| Pfam | 3 | 87 | 85 | 6.2E-36 | ||
| MobiDBLite | 81 | 123 | 43 | - | – | |
| MobiDBLite | 88 | 123 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0312800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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