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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0317400 |
| Transcript ID | LotjaGi5g1v0317400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G22670.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FNJ4|FDL32_ARATH Putative F-box/FBD/LRR-repeat protein At5g22670; TrEMBL-Plants: tr|A0A0L9T7Q2|A0A0L9T7Q2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0317400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63504910..63506932) extracted from Lotus japonicus Gifu genome v1.2.
CAGGATTTTTTAAGTTTATGTTCTAGGATTCCCTTACTGATTAATTTTTTGATTGCTTTGGATGATGTTTACTGTTGGCT AATTGGGATGCCATTCAAATAATTGGTGTCAAACCTTTGATCAGTATGAAGAGGCGAAGAAATCATGGTGATAGAAAGGG AAAGGGAAAGAGAAAGGGAAAGGGGAGGGGAAAGGAAGAGAGCAGGATCGTGATAGATGATCTCCCTGATCCAATTCTCC AGCTTATTGTATCCTCCCTTTCCACCAAAGAAGCTGTTCGTACAGGTATTCTATCCAAAAGGTGGGCAAATCTATGGAAG GATATACCCAGAATTACGCTGTGAGAAGGAGATCATCAGAATAGGCAGCAATTCGTTGACTTTGTGAGGAGATTGTTGGT TGTTCGTGATTGCTCAAAACTTGAAATGCTATCTCTCTGTTGTAAAGTTGGTGATGATACTTCTCTGGTTAATGAGTGGT TGCATGCTTTTATCAACCCAAAAATTCAAGAATTGAGTCTTGACTTCGATAATGTTGAGGAACCATTGGTTTTCCCTGAC CACCTGTTTACTTGTGCAACATTGACATGGTTCCGACTGAGTATGAACCGTATTTTCGACCTTCCTTCCTCCATTCATTT TCAAAGTCTCAGGAAATTGATTTTGATGCATGTTATACTCCCTGATGGTTCTTCAACGCAACGGCTTTTCTCTTCTTGTC CATCACTGGAGGACTTGGCCCTAATGGATTGTGATTGGGAGAATGTTACAACAGATGTTTGTATTTCTTCTCCAATGCTT CAGACATTGACCATAACGGAGTGGGATGAAGATTGGGGTAGGAATGGATTAAAGCGCCGTAAAGTAGTGATCATTGGAAA TAATCTGAAGTCTATATCCCTGGGCGGTGATGTCAGTAATGATTATTTTTTACTTAACTCAACCTCAGTGACTGATGCAT CTATTGAACTTCAAGCCCCGGATGTTTGGTGGACTGATGATTGGAAAATAGATACGGGCTATTTTATATTCAGACTTCTT AGAGAGATCCCAAAAGTGGAAAAACTTTCATTTTCTGATAATGTTCTTGAGGTTTGATCTCAACATCTTAACATTCATTA ACTTTATTCCCTTACAATTATTTCAAAGACCCTTCTGAATCTTTTGATTGTGTACGTCAGGCTATTAGCTTCACACTACC TTTACTTCAGCGTCTACCTTTGTTATGTAATTTGGCTGAACTTCACGTGATGGGAGCGACAGTGCCTGTAGATTTGTCTT GTGAAGGATTGATGACCATACTACAAAAGTCATATTGTCTCAGAGAACTTCACTTTGAATTGGTAAATTCCTGCAAACCA GAAATTTTACTGCTAGTTATTATTTACAAATCCGTACATTTTTCTTGATATTTGGTTGTGTTTAACAATGCAGGGAGGGG TCTCTCTATCTAAAAAGAAGGAGGACTATATATTGGATACATTACCTGTATGTTTTAAGAAACACCTCAAGATAATTACG ATATGTGGCTGTTCTGGGTCTAAAGGAGAGCTAAATGCAATCAGAGTATTATTACAAGCAGCATCAGTTTTGGAGACACT CTCTATTAGTTGTTTTTCTCCTGAGTTTCCTGATTTTGACACTCCAGAGGGATCAAAGAGTTTAAGCAAGATGTTTGGTA AGATTTTATGTTTTCCTAGAGGGTCAGTGGATTGTGACATTAAATTTGATTTTATTTGAAGTGAAAATGGAAAGAATAGA GGAACGACAGTGCTTTCATTGAATTTTGAGCTATGTAAACCTTTACGATTTGACAGAGATTTTAAAAAGACATTGCATTC GAATGAATCTTTGTTCATCATTTGCAATCAACCGCAAATTCCTAATGGTATTTGCAATCGGCTTCATTTCTATCAATAAG TTTATGTTAACACTCAATTCACACTCACGCCCAATGAGAGAAAAAAAAAGAAAAGTGAGAGAAATAAGAGATGTGATAGG AAAAGAAGATAGAAATAGAAAGA
CDS sequence (LotjaGi5g1v0317400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATCTCTCTGTTGTAAAGTTGGTGATGATACTTCTCTGGTTAATGAGTGGTTGCATGCTTTTATCAACCCAAAAAT TCAAGAATTGAGTCTTGACTTCGATAATGTTGAGGAACCATTGGTTTTCCCTGACCACCTGTTTACTTGTGCAACATTGA CATGGTTCCGACTGAGTATGAACCGTATTTTCGACCTTCCTTCCTCCATTCATTTTCAAAGTCTCAGGAAATTGATTTTG ATGCATGTTATACTCCCTGATGGTTCTTCAACGCAACGGCTTTTCTCTTCTTGTCCATCACTGGAGGACTTGGCCCTAAT GGATTGTGATTGGGAGAATGTTACAACAGATGTTTGTATTTCTTCTCCAATGCTTCAGACATTGACCATAACGGAGTGGG ATGAAGATTGGGGTAGGAATGGATTAAAGCGCCGTAAAGTAGTGATCATTGGAAATAATCTGAAGTCTATATCCCTGGGC GGTGATGTCAGTAATGATTATTTTTTACTTAACTCAACCTCAGTGACTGATGCATCTATTGAACTTCAAGCCCCGGATGT TTGGTGGACTGATGATTGGAAAATAGATACGGGCTATTTTATATTCAGACTTCTTAGAGAGATCCCAAAAGTGGAAAAAC TTTCATTTTCTGATAATGTTCTTGAGGCTATTAGCTTCACACTACCTTTACTTCAGCGTCTACCTTTGTTATGTAATTTG GCTGAACTTCACGTGATGGGAGCGACAGTGCCTGTAGATTTGTCTTGTGAAGGATTGATGACCATACTACAAAAGTCATA TTGTCTCAGAGAACTTCACTTTGAATTGGGAGGGGTCTCTCTATCTAAAAAGAAGGAGGACTATATATTGGATACATTAC CTGTATGTTTTAAGAAACACCTCAAGATAATTACGATATGTGGCTGTTCTGGGTCTAAAGGAGAGCTAAATGCAATCAGA GTATTATTACAAGCAGCATCAGTTTTGGAGACACTCTCTATTAGTTGTTTTTCTCCTGAGTTTCCTGATTTTGACACTCC AGAGGGATCAAAGAGTTTAAGCAAGATGTTTGGTAAGATTTTATGTTTTCCTAGAGGGTCAGTGGATTGTGACATTAAAT TTGATTTTATTTGA
Protein sequence (LotjaGi5g1v0317400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSLCCKVGDDTSLVNEWLHAFINPKIQELSLDFDNVEEPLVFPDHLFTCATLTWFRLSMNRIFDLPSSIHFQSLRKLIL MHVILPDGSSTQRLFSSCPSLEDLALMDCDWENVTTDVCISSPMLQTLTITEWDEDWGRNGLKRRKVVIIGNNLKSISLG GDVSNDYFLLNSTSVTDASIELQAPDVWWTDDWKIDTGYFIFRLLREIPKVEKLSFSDNVLEAISFTLPLLQRLPLLCNL AELHVMGATVPVDLSCEGLMTILQKSYCLRELHFELGGVSLSKKKEDYILDTLPVCFKKHLKIITICGCSGSKGELNAIR VLLQAASVLETLSISCFSPEFPDFDTPEGSKSLSKMFGKILCFPRGSVDCDIKFDFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 371 | 369 | 1.4E-57 | – | |
| PANTHER | 3 | 371 | 369 | 1.4E-57 | – | |
| Gene3D | 10 | 184 | 175 | 1.9E-9 | ||
| SUPERFAMILY | 24 | 337 | 314 | 1.14E-13 | – | |
| Gene3D | 185 | 363 | 179 | 8.7E-6 | ||
| Pfam | 293 | 334 | 42 | 1.3E-4 | ||
| SMART | 295 | 375 | 81 | 0.0076 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0317400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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