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LotjaGi5g1v0319300.1

Overview

Field Value
Gene ID LotjaGi5g1v0319300
Transcript ID LotjaGi5g1v0319300.1
Lotus japonicus genome version Gifu v1.2
Description MADS-box transcription factor family protein; TAIR: AT5G60440.1 AGAMOUS-like 62; Swiss-Prot: sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62; TrEMBL-Plants: tr|A0A072VC91|A0A072VC91_MEDTR Agamous-like MADS-box protein AGL62; Found in the gene: LotjaGi5g1v0319300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:63668700..63669310) extracted from Lotus japonicus Gifu genome v1.2.

CCTCATTCTCATTTCATCATGGATGTGTTTCAGCAGAAGAAGAAATCCACAGGCCGCAAGAAGATTGAGATCAAGAAGCT TGTCAAGGACGCGAATAAGCAAGTCACATTCTCGAAACGTCGCGCAGGCCTATTCAAAAAAGCAAGTGAACTCTGCATTT TATGCAATGTTCAAATGGCCATAATTGTGTATTCCCCTGCTGACAAATTGTTCTCCTTTGGCCACCCCAACACTGAAGCC ATCGTCTCACGCTATCTCAACGGATCTACAGAATTTGAGCCTGCAAAGACAAGAGGCAGATCAGGAACATATGAAGAGTA CAATCGAGAATACGACGAGGCGATTAAGGTGTTGGAGGCACAGAAGAAGAAACTAGCAGAGATTGAAACTTTGGCTAAGG TTTGGAACAGGGGAGAATGGTGGAATGAATCGATTGATGAGATGGGCGCTGATCAACTTGAGCAATTCATGTTGTCTATT TATGCTTTAAGGGGAAAGCTTGCAGAAAGAGCAGATCAATTCCCGATGATGTTTGCCAGGCTATAGAATATTTGGCTTTT GATGATAGTTTCACAATTTGTTTCTGTTCTTTCTATGCATTTTATTCCTGC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0319300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGTGTTTCAGCAGAAGAAGAAATCCACAGGCCGCAAGAAGATTGAGATCAAGAAGCTTGTCAAGGACGCGAATAA GCAAGTCACATTCTCGAAACGTCGCGCAGGCCTATTCAAAAAAGCAAGTGAACTCTGCATTTTATGCAATGTTCAAATGG CCATAATTGTGTATTCCCCTGCTGACAAATTGTTCTCCTTTGGCCACCCCAACACTGAAGCCATCGTCTCACGCTATCTC AACGGATCTACAGAATTTGAGCCTGCAAAGACAAGAGGCAGATCAGGAACATATGAAGAGTACAATCGAGAATACGACGA GGCGATTAAGGTGTTGGAGGCACAGAAGAAGAAACTAGCAGAGATTGAAACTTTGGCTAAGGTTTGGAACAGGGGAGAAT GGTGGAATGAATCGATTGATGAGATGGGCGCTGATCAACTTGAGCAATTCATGTTGTCTATTTATGCTTTAAGGGGAAAG CTTGCAGAAAGAGCAGATCAATTCCCGATGATGTTTGCCAGGCTATAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0319300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDVFQQKKKSTGRKKIEIKKLVKDANKQVTFSKRRAGLFKKASELCILCNVQMAIIVYSPADKLFSFGHPNTEAIVSRYL NGSTEFEPAKTRGRSGTYEEYNREYDEAIKVLEAQKKKLAEIETLAKVWNRGEWWNESIDEMGADQLEQFMLSIYALRGK LAERADQFPMMFARL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11945
10 169 160 2.7E-42 –
PANTHER
PTHR11945:SF164
10 169 160 2.7E-42 –
SMART
SM00432
11 70 60 2.5E-29
IPR002100
ProSiteProfiles
PS50066
11 71 61 24.151
IPR002100
SUPERFAMILY
SSF55455
12 83 72 7.98E-27
IPR036879
CDD
cd00265
12 83 72 3.81541E-34
IPR033896
PRINTS
PR00404
13 33 21 2.7E-19
IPR002100
Pfam
PF00319
23 67 45 3.1E-22
IPR002100
Gene3D
G3DSA:3.40.1810.10
23 120 98 2.4E-25
IPR036879
PRINTS
PR00404
33 48 16 2.7E-19
IPR002100
PRINTS
PR00404
48 69 22 2.7E-19
IPR002100
Coils
Coil
98 125 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0319300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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