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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0321400 |
| Transcript ID | LotjaGi5g1v0321400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I reaction center subunit N; TAIR: AT1G49975.1 photosystem I reaction center subunit N; Swiss-Prot: sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6; TrEMBL-Plants: tr|I3S8I6|I3S8I6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0321400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64011109..64020225) extracted from Lotus japonicus Gifu genome v1.2.
CTGGCCTGCAATAAAGAAATGGATTTGGTTTCCATTCTTTACATAATCTAATCCATATTCATATTTTGACCACTTATGCT GCCCTGCCTCATCTTCATTATCCATTCGCTATAACTCTTGGTTGTAGTAAAACAAGCTAGCTAGAAAAGCAAGAGACTTA TGAATACTATGAGATGAGTTCAGTAGGGCAAAGCATATTGATGGCACTAACTGTTACAGTTAACAAGTATGCTTCATCCA ATTTGCAAGCAGTTCATAGAACACAAGAAAAAGCAGGAAACCAAACCACACCAACATTGAGCACCAATGGGGAAGTGGGA AGGAGAGGACTCATCTTATCTACTGCAATTGCCACCACCCAAGTACCTGAATCTAGGACTCAGCTTCTAAAAAGTATTTC ATCACTTTCTTCTGTTTGTTCTTCTTCTTTTGTCTTAAATTACTGATAGCTTCCCTACATCTTAACATGTTGTAATGGTC TTGCTAAAACTTTTATCAGAATATCAGAAGAAATCTGAGGAAAACAAGGAGAAAAATGACAAAGAGGTAAGCAAATGACT AGCTAAATTCCTTAGTACTTGTATGATTATGTGCATTTAAATATTAGAAATGAATAAGTGATGCAGGCTATGTTTCGAAA TTTGGATACCAGTTGGCATGAGTGCTAACATTAGTACTCACTTCAAAGGAAAAATATAATGCAAATGAAGTCCCTCTTAT TATTCAACACTGATATTTACACTTAAATACTCTGTTTTAATTACAGAATACAAACAGTGTAACCACTTGTGGTACACGAC TAACCTCTTAAATACACAATATAAACCACCTTCTGGTCCTAGCTGAATTACTAACTACAACAAAATGAAAGTCTATTCAG GTTAACTCAACTAGTATCCAAATATACACGCAATTATGTAATAGGACTATTCAACATGTTTTATTTAGTTTACGCATGTT TGGATTATCTTCTCTACTAGAATAAATTATGAAATCAAGAAGCTACTCATGGACTACCCAGAATTGATTTAGTTTCAGCA TCAATTGTGATTGTAGAAGGTCTTCCAAAATGGATATAAGATGTGTATTTATGTTGTGTGTGATATTTAATGTTTAATCA CTTTGTGTTGCAGAGACTGGATAGTTATTACAAGCGTAACTACAAGGATTACTTTGAATTGATGGAAGGGACTTTGAAGG GAAAAGATGGGGAGCTTTCAGAAACAGAAAAGGGTATCCGTGATTGGCTTCAAAGTAACAAGTGAAATTCTACTTTTCAG TCATTGAATTTGTTTTGTAAAATGTAGAGGCACCTTCCAAATTGTAAATTAGAGCCACATTGGTATGTAGCCTAGTAGAT TGTGATTTTCTGTATCCTTGAAATTCACCTAGTACAACCATTTCAAGTATTGATATTGATTTATATTTGACCATAGTTGG CATCACATTCTTCAATAGTATATTTAACCCAAAAAAATCATTGGCTCCAAGCCTCCAGCAATTTCACCTTCTCAGGGTTT TAAATTGTGTTGGAATCAAGTGTTGGAGTCAAGTCCCACATCGGAGAAGTCAAGGTGAGAGGGAGAGTTTATAAGAGATG TGACCCATAAACCTAATGCCTTAAGGTTTTGGGTTAAGATGTGGTGTCCAAGATCTCCTTGGTGTCTCCTCTCGGCCTTG GCCCATAGGTCCTCGCCGTAACTCTCCCAACAAGTGGTATCAGAGCCGATGGTTTGTGGAGTGTTTTGAAGTCGGTACAT TGGCATCGCGACCATAATTATATCCTGCATCTATCTACTACACTTGAAAGGGAACCTCAAAGGGGTACTGTTCATAAGAG AACTACACATCTCGACCGTTCAATTTAATTTTTGTTGATCTATGTTTCCATTCAAGCAATCTTGCCCGTTCATATTTGGC TGACCCAAAGAGACGTCATCAGTGTTTTTTTCACGCTTTCTCCCTCTAGCTAACGACGTCATTGCCTTTGCCGAAGAAGG ATGGATGGGTTGAAGGTGAAGAGCGTGCGTTTGGCAGGGTCTCATCCCATACAAGTCAGTTTCTCATCTGTTCCCGTCAA ATCGGGTCTCTGCTTCCTTCAATTTCATCATCACGCATGCTCGCTTTCCCTTCCGTGTTCAAGGAGGTTTCCCTCGCCGA AGAAGGAGAAGAGTGTTTGCTAGGGTTTGCGTTCGCGAGATTAGGTGAAAATGGTCAGGAGTGAGTGAGGTGACAATGAG AAGGAATAGAATAGATTGTTGAAGGAGAAGAGCAAAATCACAAGCCAAAGACGTCCTTTACTTTCGTCAGCTGATGCTTT CCCTGTCAGTTGAGTACAAGAGGGTTGGTATTCATTGTGGTCCAGCAGGTTTCTTTCTTCCATTCAATTGTCTGTTTCGT CTCAATCACCATAAATTTTATTGATTTTTTTTGTACTTCTCATTCAACCTTATCTGTTTCACTTGATTTTTCCATTTAAT TTGATTTTTTGAACAAGCAATGCAGGCTCTCTATAAATACCCCTGTTGTGAATTTACAATCAGTTTGCTTCCCATTTCCC CTTTGTTAAACTATTTGTTGATTTCCACTGATTTCCCCAATGTCTGAACCTGTGAATTCATTTCGAAGCTTATGCCCAGG TTTGATTGCATTTCCAATGCCCACAAGGATTTAGAGTTTGTTGACAATTTTTAGTTTTTAATTTTGCCTTTTGGCAGGCC GATCCAGAAACAGATGAAGTTATCTTGTATTTGTTACTGCCAATTTGAGCTGAAGTTAGGTTTAGGTTCTAGATGTAGAA CTAGATTGTGATGGCTTAGCAGAAGCTCTCCTCTTCTACGTGTTTCTTCAGTTGGTGTTGGCTATAAATATTCCCACAAT TGGTCTTTCATTTCAGATTTTGTATTTGTCTCCATGTATCTCATTCTTTTCCTCTTCTTCCATGCTTACAGAGAAAACAC TTTAACCCACGGTGAGAGCACTCAGACATGGGGAAAGAGGGATGGAGGTCTGTAGGCAGAGGACAGGTGGAAGCTAGATG ACCATGTGTGCCAAGGTATGTGAATCGCTCTATCTTTAGTTTTGAAATCCTAATTCTAAGTTTCAGTTTTATCATTCTCT TTTCATATTTGAAATCTTATTCGGTTATTTTTTCTGGTTACATGAAATCTTCTTGTTTGAATTTGTGAACCACGAACTAA GAAATGTGAGCTAAGATCTACTTTGTAATGACAGTGTTCCAGTAATTTACTTGCTGGCATCCTTCAGTTTAATTAATTTG AAATTGAAATTTGTAATGACCTACCTGTCTCACTTTGTATCCGTCTATAAATACTGGTGTATTGTGGTCTCTTTGTTGCT CTTGCTCATATCCTGGTTTGATTTTGATATTGCTATTGCTTCATTGCTACCTATCTTCATATCTGATATCTGATATTTGT CTTGTGCCTTAATCTCAATCATGGCCTTTACTTTTGCACTTGCACTTGTCTATAAATACTGTCATTTTGTGATCTTCTTG CTGTGCTTGCTCATAACCCTTTTCTTTTGCTATTTCTACATTTCTACATAACTGATAATTTTCTTTTGATTGTGATCGAC TCACAGGTTCGTGTTATTTGATGCCTTGCAAATGGAAGACATCACTGAGTCATATGATGAGGGTGGTTCTTTTGATTCTG TGGTTGGTTCTTTTGGCTTATATAAAGTATTGCTTTTAAGTTTTTAAATTAAACTGCTCAATGGATTTACCATATTGTTC TTAGCATTGCCTGTTTGTTCTTCAATGCTATCTATGAAAAACCATCTCTGTGCTATGCTATCTACTGATTCCTGGTACAT ATAGTCACGTACCAAGGATTTCTGAAGGGACACTTAATTGTTGTATGGAATTATTCTCTGTTTTATTGCGGTTTTGAAGA TTTTTCAAGAAAAGAGAAGTGGAAGGAAAGATTAAAACCCTACTTCTGTTGGTTTTATGCTCACCATGATTTAGTTAATG CTCAGCAAGTTCATTTTTGTTTGAAAAAACAGAAAATTCTAATCCAGTTTACCTCGTCTGTTTAGTTTGCAAATGATTTT GTTTTGTAAGCAGGTAGAACTAAGAATGGTTACTGAAGTACTTTCAATGGACTAATCTTGAGCTGTAGGATGTTCCAATG TGATGGCTTGTCCTGCTCCTGCTTAATGTAGATAATAGTTTGTTATCTTGCTGTGCAAATTATGTTACTTTGTTCTGATT TCTGAAGCTTAGGCTGAATGGCGTGGGCAATCTGGCAACTTCGGAACTATGTAATCTTCAAGGAGGGGAGAAATCAAGAT GTGTCAATCTTTGAAGGTGCTCAACTTAGAGCTTGGCATTGGTTTACAGGAAGAGTGAAGGGATTCAATTGCTCAACATA TGAATGGTTGGCTCAACCTATACTATGTATTAAGGCAGCGGTTCTATGATTTTGATGCACTCACCAGTTCCTCTGGACGG CGAAAAGGGATTTTTATTTTTTTGAAACAAAGAGAGAAAGTGAAGGAAATTTACCAAAAAGAAAAAACGCGAGAACGTTG TTCCCCTAAACTCTGATCAAATCGAGGTTAGCGATCTGTTCCAAATTCACAATTAATCCTCTCTATTGCTGTGTAGTTTC TATTCGTAGTTAAAGTTCAATTTTTGGTTCAGTTTTCTTCATAAAAATATTGGTTCAGTTTTCTTCTATTGCTGTGTAGT TATAGATTTTTATTTTTATTTTCTGTCATTCCTTTTTTTCCTCCTTCATGTAAATATAATTGGGGATGTTGTTTTCTGCA GCTATTAAAGAAGCAAGGTTGGAAAGAAGGGAATGGTCTTGGGATATCTGAGCAGGTTTTGTTTCTTACTCTCTTTTCTT TTTCACTGAAAGATAAAATCAACAGTTACAAATGTTGTTTTAGATGTTGGGAATGTGTATTTTGTTGGTGAAATTAGTCC CTATAACCAGCAACTGATTTGACCAAAGAAATTCATACTTGGTGATGAATTTAATCAGTGAAATGCTCCTGTTTGTGCAC TTGTCTCATTCCCATAATTGTAGTCTATTAATCCTATGTTTGAAATTTTCTTGCATTGATTCTGATAAATGGATTCATGA TGGAAACAGGGTAGACTAGAACCCATGGAAACTTGTGTGAAGAATAACAAACGAGGTTTGGGAGCGGACAAAGGGAAGAA AAAGGCTGTGAAGTCTGATGATAGTAATGTCTCTGAAGGGAACTATCAGCAGGTAACTTTTTGCTCCTAGGTCATCATCT ATAAATCATCAGCTTAAGGACATATTCCATAGGAATAAGATAACTATGGAAAATGGTAATAGTTCATTCATTTGGAATTG GAAGTTTATATGGTTGTCAAAGATTTTCTTATCTAAGATTGTGCTAGCTGTCCAAGTTATTTTGATTGGAATAGATTGAA TTTTCAAGTTTTATTCCATTCAATTTGATGGGGGAGTTTAAGAAATATGATATAGTATTCAGTAGTGAATAAACTCTGAT GATTGAGTAATTAGCTTATTCAGTGCAACCAAAGTAATGGTTATTTGTATCTTTATGTAACATAGTAGTACTATAAAATA ATTGAGGTATTCAGTCAGCTTTTGTATCGAACTATTCTCAGTCATTACTAATTAGTAAAATACTGCATTCCCTTTGTCTT GCACTACTCCATTCTGAAATAAATTTATTAGTATGTTGGACATCTCTAATATCACCTAATGTCTAACATACCACGTTGCT AGAGAAGCGCTACATGGCAGAACTAAATCAATTTAAGAATCACTCTTTTACTATGTAATATACCATGAAGTAAAAGAAAG ATTACATGGCAGTAGAAGATGCATTATATGTGGTAATACATGTAATTATTTGAATCAATCTAGGAAAACAAGAAGTCATA CTAACTGCTTTATAATTTATGTACATTGAGAGTGGTAGCTTGATCTTTAAAATGAAGAAAAGCTTACCATAAACAAAGTA ATACTGCATTGCCTTTGTGTTTGTTTATTGATCATGTTGCTACAAATTCATAAAATGTGCAGCTTGATTTTTATTTTAAA TAAAGCTCACCTTGCTTTGTTAATTTCTTTGATAAGCTTGGCTTTCCTTAGCTTGCTGCACAACAGTCTTAGATTCCCTT AGTTTGTTTCATATTAAGCTTAACTGTGTGTTGTTGATTTGTTGCATAAAAGAAGGTTGGCTTTCCTTAGCTTGTCTCAC AATAATCTTAGATTCCCTTAGTTTGTTCCATATTGATTCCCTTATAGATTGTTGCATAAATGACTAGGCTTTCATTAGTT TGCTGCATAATATGCTTGGATTTCCTTAGCATTGCTGCATATTAAACATAGCATTGCTTGATGTTAATTTACTGCATACT AAGCTTAGCTTAACTACGGTGTAAGTTTAGAATGACACATTATTTATCATTGGAAATCTTTGACTTTTGAATCAAAGTGG TAGTATTTTCTCTTGATCGTCAAGTGCTCAAAGTGGTAGTATTTCAAATTTTGATTTACAAATATTTGTTAACCTCTTTC TTCTTCCATTGTAGATAACCAAGGGTCTGTTGGAGAAGTATGGCCCTGAGAGGGTTCTTGATACTCCAATCACTGAGGTT CTTTTTCTTACCTCACTCCAGGCACAATTTTTTTTCTTCCACGTAGAATTTACTGCTCCTTGCTTTTGTTTTGATACAAT TTAGACACATTTGGAATAGAAGGACAAATGTCTCTGATTTTATCTTATTTCAACTATTTGTTGATTTATTTTATTGGCAT ATTTTATTTTATTTTCAAAAAATAATACAGCAGTCGTGCATCGCACGGGTAAACTACCTAGTGATTTACAAAGTTGGTAG TACTTTTATTGATCTTATGTGTTTTTGCCTATTTTTCCTTCAGCCTCAGATTACTTTTTTAAACTAGAAAATAGTCCCTT GACACCAAATTCCACCTCCACCTATAGCGAAAGATAGGAATAGAAGAGAGAAAAGTGAGACATATGGTGTGCGATTGGAT AGGAAAGAAGAAAGATATAACAAGGAAAAGTGAGTGGAAATTAAATTGAAGAGAAAGTGTGAACATATCAAAACTGTATA ATCATCTTATTTTCAAAATTGAATCTTTATCCCATTCTTTGGTTACATGCATAGTAATATGTAAACACACTCGAGTAATT AAAGTGGTTTGTTATGTTTAATGTTGCAGAACAGTTGTTGATGTTAGATTATTTTAGTGAATGTTTTGGATGTTAAAATG TGGGAGTGTTGTTGACAGATAGAAACAAGCCTGTACCTGAGGCAGTATGCACGTACAAATTCTGAAAAGTATCAGCTTTT CATCAATTTATATGCAAAAGTTCTTGAGGTTAGTGTGTTTGGAAATTTAGTATGTTCATTGTTGTGTAAAGTTAATTTAG TATGTTCATTATATGTTCACTGGCGTACTAAGTGAGCACCCTTTTTTGTGGTTTACTCTACTGGTGTTTCATACCAATTT ATTGGTCTTCAAGGCTACTAAAATGTGGTTTTTGATTTATGTTGCAGTTCCTTTTTGTTTATTTTTTTATCCGACTTGGT TCATATATCTCTTTTGGTTCAAATGCCTTCATATTCGCTGATTGGTTCTTTCTATAATACGGGGTTGTATAACTCATGCT TTCATGAGCTATTTTGTAACATTGACTTATTACTCATCAATACAATTTTTCTCTTTAAAGAAAAACCAGCAAAGCAAAAG AGCAAGAGTAACTACTTTATGAAATAATTAATTCCAAGTGGAGAAAATAACTTACTTTTTTGTTACTTTTAAAATGATGG TGCCTAAAACGTATTCCTGTTTGTAACTCTACCTGATTAATTTCCCCACAGGGACATTCACCACTGAGCTCACTAGGAGT TCTCAATAATGACACCCTTAAGACCCCTTTGACACTGATCTAAGAAGTTGCAGAGAAAATTGAGGGCGATACTAGCCCAA CTCGCTCTCTGGTCGAGCCTGCAAGTAAGGCACAGTGTGCTGCCTAAGATCACAAATGAGTCCAGGATCAACTGAAATTT TGATGTATTTGAGTTGTCTGTTCGTGAAGGCCTGATGGCCAAGTTCTCTGGTGTTAACCAAGCAAGTAGAGAGTTACTTA GTTTAATTTAGTTTTTCTTATATCTCTTAATATTTATTTGCTCTACATTATTTTTTGAGGCCTGACCATATAATTGTGAA AATGTGATATTAATGCTAGAGATACTAAAAAAATTTCATTAATGCTAGAGATACTTGAAGCTCGCATGTTTTATGTTATT TGGTTCTGTTCCCCTATCTATCTACTACTTCTTATTGGTCTGTTTTCAAATTACTATTCATAAGAGACTTTTTTTTTACC AGGACTCATTTCTGGGCTCCGCCAGTACTAGGAAACTACAGCCCATTCACTTTAGTACTTTACTTCATTTTTAGGGTGGC CAATCACTTTACTACTTCACCCCATTTTTAGGGATTTCCCTGGATCCCTGGCACGAACGTGAACTCCAGCCAACACTGCA AAGCTATTCTGGATCTCTCATTATTTTTCTCTCACTTTCCTTCATTTGTCATTCTTGCAGGGAAAATATGTGAGACTATG GGCAAGACATCCAAAGTTGTGGCAGTGAACTTCTGAAAGAGGATAACGTTATAGCGTCATGGTCACTTGTGTGGGGAGGT TGGGTCGCTATGCTTGCAGAGAATGAATTTGAGGGAGAAAGGGAGAGTGCGAGAGGTAGTGCACTCCACTGTGGGAAAAA GATGGGGAGGAAAATCTTAATATAGTGAGACAGTGGGAAACAACTTCATAGCAGGCTATTTTAGATTTTGATGTATTCTC TTTTTCCTTTTATTCATTAACAAATTTTCACTTGGTTTAAATATATTTTAGAAGGCTTTTTTAATTTCACTGGTTTTAAT ACTTGTGCTACCTACAAGATTTCCCTATGCCTCCCCTTGTATCCATCTATATTGGAGAAAAATGAATTTGCAGTTGTTTG TTAATATATATTGGGTAATGTGTCCATGTAGTAATTTTAATTGGCTATTATTGCAACCAGCTTCAATTATCGTTGGC
CDS sequence (LotjaGi5g1v0321400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCAGTAGGGCAAAGCATATTGATGGCACTAACTGTTACAGTTAACAAGTATGCTTCATCCAATTTGCAAGCAGT TCATAGAACACAAGAAAAAGCAGGAAACCAAACCACACCAACATTGAGCACCAATGGGGAAGTGGGAAGGAGAGGACTCA TCTTATCTACTGCAATTGCCACCACCCAAGTACCTGAATCTAGGACTCAGCTTCTAAAAAAATATCAGAAGAAATCTGAG GAAAACAAGGAGAAAAATGACAAAGAGAGACTGGATAGTTATTACAAGCGTAACTACAAGGATTACTTTGAATTGATGGA AGGGACTTTGAAGGGAAAAGATGGGGAGCTTTCAGAAACAGAAAAGGGTATCCGTGATTGGCTTCAAAGTAACAAGTGA
Protein sequence (LotjaGi5g1v0321400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSVGQSILMALTVTVNKYASSNLQAVHRTQEKAGNQTTPTLSTNGEVGRRGLILSTAIATTQVPESRTQLLKKYQKKSE ENKEKNDKERLDSYYKRNYKDYFELMEGTLKGKDGELSETEKGIRDWLQSNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 132 | 132 | 9.1E-48 | – | |
| Pfam | 52 | 94 | 43 | 2.8E-4 | ||
| MobiDBLite | 66 | 91 | 26 | - | – | |
| Coils | 68 | 92 | 25 | - | – | |
| MobiDBLite | 71 | 91 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
Expression pattern of LotjaGi5g1v0321400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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