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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0325700 |
| Transcript ID | LotjaGi5g1v0325700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TIP41-like family protein; TAIR: AT4G34270.1 TIP41-like family protein; Swiss-Prot: sp|Q54MI6|TIPRL_DICDI TIP41-like protein; TrEMBL-Plants: tr|M9RX85|M9RX85_9FABA TIP41-like family protein; Found in the gene: LotjaGi5g1v0325700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64333405..64334374) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAATTTGCAGTCGACGAGAACGACCTGAAAGCCGCCGGCGCCGAGCTCTTCGAGGACGGTGGCCGGAAAGGCGTCCG CATCCATGGCTGGCTGATTGAGTCTCGGAGGCACTCCATACTCACCTCATCAAACGTCGAAGAGTGAGTATTCACTATTT CTGCATCACAATTAGCCCTAGTGGGATCCCGTTATTCCGAATTTGAAATTCTAAGATTTGGTTGTTATTGATTTTCTGCA ATTGATTTGGTGGAATGAAAATCAGAGCATGTTTTGTTTTGATTGATGCAGGTGGGAACAGAAGCTTCACACGTCTCATT TACCAGAAATGGTTTTTGGAGAAAACACTTTGATTCTAAAGCATTTGAGTAGTGGCACCAAAATTCACTTCAATGCATTT GATGCTCTTCGTGGCTGGAAACAGGAAGCTTTGCCACCGGTTGAAGTTCCTGCAGCAGCTCAATGGAAGTTTAGATGGTA AGGTAGCCAAATTTTGATGCAAAATTGCATTTCTTTCATGTTTTGCAATGGTTATAGATATGTATGACTTAAATCAAATG CTGTTACTATTCTAAGAAATTGCCTTATGATATAAATGACCTTGCTTTTGCTGTTAGCCTCACATTGTTTTGGGAAAAAT GTGCAGCAAGCCTTCTGAACAAGTGATACTAGACTACGACTATACATTTACAACACCTTATTGTGGAAGTGGCACTATTG AGATTGATAAAGATCTGGTATGCATACAATGATTTGTGAATAAAAATATGGAAAGTCCCGTTGATGTTTTTGCCTATGCT ATTATTCAAGGTATTTAATTTTTGTGTGGTAGAATGCGAGCGAGATTTCTGAGGAAACTAGCAATCTTCATTGGGAAGAC TGCAAGGAACAAATTGACTTGGTTTCATTGGCGTCGAAAGAGCCTATACTTTTCTATGATGAGGTGGGTAGTGAGTACCT TAGTGAATAA
CDS sequence (LotjaGi5g1v0325700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTTGCAGTCGACGAGAACGACCTGAAAGCCGCCGGCGCCGAGCTCTTCGAGGACGGTGGCCGGAAAGGCGTCCG CATCCATGGCTGGCTGATTGAGTCTCGGAGGCACTCCATACTCACCTCATCAAACGTCGAAGAGTGGGAACAGAAGCTTC ACACGTCTCATTTACCAGAAATGGTTTTTGGAGAAAACACTTTGATTCTAAAGCATTTGAGTAGTGGCACCAAAATTCAC TTCAATGCATTTGATGCTCTTCGTGGCTGGAAACAGGAAGCTTTGCCACCGGTTGAAGTTCCTGCAGCAGCTCAATGGAA GTTTAGATGCAAGCCTTCTGAACAAGTGATACTAGACTACGACTATACATTTACAACACCTTATTGTGGAAGTGGCACTA TTGAGATTGATAAAGATCTGAATGCGAGCGAGATTTCTGAGGAAACTAGCAATCTTCATTGGGAAGACTGCAAGGAACAA ATTGACTTGGTTTCATTGGCGTCGAAAGAGCCTATACTTTTCTATGATGAGGTGGGTAGTGAGTACCTTAGTGAATAA
Protein sequence (LotjaGi5g1v0325700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFAVDENDLKAAGAELFEDGGRKGVRIHGWLIESRRHSILTSSNVEEWEQKLHTSHLPEMVFGENTLILKHLSSGTKIH FNAFDALRGWKQEALPPVEVPAAAQWKFRCKPSEQVILDYDYTFTTPYCGSGTIEIDKDLNASEISEETSNLHWEDCKEQ IDLVSLASKEPILFYDEVGSEYLSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 178 | 160 | 4.7E-50 | – | |
| PANTHER | 19 | 178 | 160 | 4.7E-50 | ||
| Pfam | 61 | 178 | 118 | 3.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of phosphoprotein phosphatase activity | Any process that modulates the frequency, rate or extent of phosphoprotein phosphatase activity, the catalysis of the hydrolysis of phosphate from a phosphoprotein. |
Expression pattern of LotjaGi5g1v0325700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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